Wall clock time and date at job start Tue Mar 31 2020 01:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46899 * 2 1 4 4 N 1.46905 * 109.47121 * 240.00315 * 2 1 3 5 5 C 1.46901 * 111.00014 * 83.56500 * 4 2 1 6 6 C 1.53000 * 109.46986 * 185.05987 * 5 4 2 7 7 C 1.50698 * 115.54933 * 273.14200 * 6 5 4 8 8 H 1.07999 * 120.00334 * 122.21700 * 7 6 5 9 9 C 1.37875 * 120.00063 * 302.21514 * 7 6 5 10 10 N 1.31518 * 120.00144 * 353.98880 * 9 7 6 11 11 Si 1.86799 * 120.00098 * 173.98705 * 9 7 6 12 12 H 1.48500 * 109.47191 * 0.02562 * 11 9 7 13 13 H 1.48510 * 109.46889 * 119.99932 * 11 9 7 14 14 H 1.48497 * 109.47026 * 239.99888 * 11 9 7 15 15 C 1.53000 * 117.49615 * 127.43328 * 6 5 4 16 16 C 1.53000 * 117.49614 * 58.81067 * 6 5 4 17 17 C 1.50696 * 109.47294 * 120.00207 * 2 1 3 18 18 C 1.38233 * 120.00689 * 94.42553 * 17 2 1 19 19 C 1.38226 * 120.01227 * 179.97438 * 18 17 2 20 20 C 1.38252 * 120.02899 * 0.04775 * 19 18 17 21 21 C 1.38204 * 120.01284 * 359.97438 * 20 19 18 22 22 C 1.38330 * 120.00861 * 274.15865 * 17 2 1 23 23 Cl 1.73605 * 120.00862 * 359.97280 * 22 17 2 24 24 H 1.08997 * 109.47131 * 300.00251 * 1 2 3 25 25 H 1.09004 * 109.47016 * 59.99609 * 1 2 3 26 26 H 1.08998 * 109.47137 * 179.97438 * 1 2 3 27 27 H 1.00900 * 110.99576 * 207.51462 * 4 2 1 28 28 H 1.09006 * 109.47095 * 305.05984 * 5 4 2 29 29 H 1.08995 * 109.47491 * 65.05937 * 5 4 2 30 30 H 0.96996 * 120.00279 * 185.01368 * 10 9 7 31 31 H 1.09001 * 117.50133 * 359.97438 * 15 6 5 32 32 H 1.09001 * 117.49938 * 145.02251 * 15 6 5 33 33 H 1.09000 * 117.49886 * 214.97352 * 16 6 5 34 34 H 1.08994 * 117.50226 * 359.97438 * 16 6 5 35 35 H 1.08000 * 119.99553 * 0.02562 * 18 17 2 36 36 H 1.08004 * 119.98495 * 180.02562 * 19 18 17 37 37 H 1.08001 * 119.99469 * 179.97438 * 20 19 18 38 38 H 1.07997 * 120.00430 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1995 5 6 2.0503 0.2140 -2.3551 6 6 2.4432 -0.5705 -3.6084 7 6 3.9240 -0.6997 -3.8567 8 1 4.3749 -1.6778 -3.9365 9 6 4.7032 0.4308 -3.9819 10 7 4.1396 1.6189 -4.0033 11 14 6.5595 0.2750 -4.1213 12 1 6.9409 -1.1593 -4.0723 13 1 7.0103 0.8629 -5.4084 14 1 7.2028 0.9976 -2.9947 15 6 1.5291 -0.4547 -4.8298 16 6 1.5538 -1.7480 -4.0126 17 6 2.0324 -0.7104 1.2304 18 6 2.3499 -2.0545 1.1714 19 6 2.8112 -2.7061 2.2997 20 6 2.9544 -2.0144 3.4882 21 6 2.6368 -0.6707 3.5486 22 6 2.1811 -0.0164 2.4177 23 17 1.7897 1.6734 2.4906 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 2.9279 -1.1005 -1.0359 28 1 1.0636 0.6552 -2.4970 29 1 2.7795 1.0044 -2.1777 30 1 4.6791 2.4088 -4.1642 31 1 0.6475 0.1800 -4.7403 32 1 1.9986 -0.4719 -5.8134 33 1 2.0396 -2.6159 -4.4585 34 1 0.6889 -1.9640 -3.3853 35 1 2.2383 -2.5954 0.2433 36 1 3.0596 -3.7562 2.2530 37 1 3.3145 -2.5242 4.3696 38 1 2.7491 -0.1304 4.4769 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088249754.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:30 Heat of formation + Delta-G solvation = 24.302179 kcal Electronic energy + Delta-G solvation = -19529.050901 eV Core-core repulsion = 16590.050972 eV Total energy + Delta-G solvation = -2938.999928 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.62414 -38.76631 -37.39174 -36.64598 -34.07800 -32.25169 -31.64490 -29.94572 -27.70186 -26.28251 -24.25563 -23.31187 -22.82151 -21.19421 -20.91051 -18.39444 -17.78060 -16.92312 -16.66391 -16.51885 -15.80076 -15.63340 -15.14324 -14.92269 -14.66696 -14.46454 -14.10660 -13.49476 -13.43950 -13.14168 -12.91556 -12.88070 -12.82490 -12.52267 -12.46914 -12.36987 -12.26568 -11.96949 -11.95333 -11.49608 -11.16697 -10.76962 -10.46392 -9.98434 -9.80852 -9.59896 -9.15879 -8.09054 -6.19300 0.22418 0.36290 1.19103 1.37797 1.41804 1.51591 2.41562 2.72332 3.10813 3.25104 3.66852 3.77809 3.99459 4.15702 4.32085 4.35435 4.44261 4.50154 4.55604 4.68643 4.74676 4.80256 4.84476 4.96914 5.05975 5.07612 5.08718 5.18387 5.29581 5.32368 5.34512 5.49496 5.54915 5.64303 5.67897 5.90750 5.93673 6.34448 6.46550 6.59669 6.89898 7.46254 8.96615 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.016464 B = 0.005369 C = 0.005084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.250840 B = 5213.738490 C = 5506.399640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.119 3.881 3 H 0.033 0.967 4 N -0.667 5.667 5 C 0.121 3.879 6 C 0.029 3.971 7 C -0.502 4.502 8 H 0.053 0.947 9 C 0.025 3.975 10 N -0.908 5.908 11 Si 0.945 3.055 12 H -0.265 1.265 13 H -0.283 1.283 14 H -0.284 1.284 15 C -0.194 4.194 16 C -0.164 4.164 17 C -0.088 4.088 18 C -0.105 4.105 19 C -0.113 4.113 20 C -0.108 4.108 21 C -0.116 4.116 22 C -0.049 4.049 23 Cl -0.080 7.080 24 H 0.062 0.938 25 H 0.048 0.952 26 H 0.064 0.936 27 H 0.338 0.662 28 H 0.037 0.963 29 H 0.020 0.980 30 H 0.258 0.742 31 H 0.068 0.932 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.089 0.911 35 H 0.139 0.861 36 H 0.154 0.846 37 H 0.163 0.837 38 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.211 -5.874 15.853 17.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.009 3.991 3 H 0.051 0.949 4 N -0.298 5.298 5 C -0.008 4.008 6 C 0.028 3.972 7 C -0.540 4.540 8 H 0.071 0.929 9 C -0.175 4.175 10 N -0.546 5.546 11 Si 0.771 3.229 12 H -0.189 1.189 13 H -0.209 1.209 14 H -0.210 1.210 15 C -0.232 4.232 16 C -0.202 4.202 17 C -0.089 4.089 18 C -0.123 4.123 19 C -0.131 4.131 20 C -0.126 4.126 21 C -0.135 4.135 22 C -0.076 4.076 23 Cl -0.052 7.052 24 H 0.081 0.919 25 H 0.067 0.933 26 H 0.083 0.917 27 H 0.156 0.844 28 H 0.056 0.944 29 H 0.038 0.962 30 H 0.068 0.932 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.091 0.909 34 H 0.108 0.892 35 H 0.156 0.844 36 H 0.172 0.828 37 H 0.180 0.820 38 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -4.813 -5.772 15.742 17.445 hybrid contribution 1.643 1.287 -0.461 2.138 sum -3.170 -4.485 15.281 16.238 Atomic orbital electron populations 1.21632 0.92784 1.02348 1.01146 1.20408 0.96655 0.94716 0.87298 0.94918 1.60708 1.32213 1.34029 1.02837 1.21123 0.96864 0.93056 0.89710 1.18900 0.90905 0.96287 0.91115 1.20861 0.91995 0.92104 1.49039 0.92896 1.25634 1.02012 0.95093 0.94750 1.70077 1.36687 0.98334 1.49496 0.85702 0.81395 0.78393 0.77383 1.18929 1.20898 1.21030 1.22779 1.02120 1.01257 0.97065 1.22661 1.02575 0.91357 1.03570 1.19880 1.00275 0.95100 0.93636 1.21256 0.97965 0.92856 1.00223 1.21615 0.97753 1.01586 0.92154 1.21494 0.98750 0.93093 0.99253 1.21295 0.99341 0.95709 0.97144 1.21008 1.05334 0.85243 0.96023 1.98351 1.92789 1.15545 1.98471 0.91897 0.93274 0.91659 0.84366 0.94449 0.96196 0.93234 0.91307 0.92136 0.90893 0.89241 0.84370 0.82827 0.81955 0.83308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.67 9.38 71.98 0.67 -2.99 16 2 C 0.12 4.03 2.35 44.17 0.10 4.14 16 3 H 0.03 1.26 6.82 -2.38 -0.02 1.24 16 4 N -0.67 -25.65 5.36 -495.44 -2.66 -28.30 16 5 C 0.12 5.62 5.24 86.30 0.45 6.07 16 6 C 0.03 1.40 1.65 -52.93 -0.09 1.31 16 7 C -0.50 -27.03 8.88 25.60 0.23 -26.80 16 8 H 0.05 2.85 7.82 -2.91 -0.02 2.82 16 9 C 0.03 1.36 5.21 84.65 0.44 1.80 16 10 N -0.91 -51.84 11.92 21.45 0.26 -51.59 16 11 Si 0.94 43.22 29.54 68.60 2.03 45.25 16 12 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 13 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 14 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 15 C -0.19 -9.08 9.88 30.60 0.30 -8.78 16 16 C -0.16 -7.03 9.81 30.60 0.30 -6.73 16 17 C -0.09 -2.58 4.92 -19.84 -0.10 -2.68 16 18 C -0.10 -2.73 8.87 22.27 0.20 -2.54 16 19 C -0.11 -2.25 10.05 22.27 0.22 -2.03 16 20 C -0.11 -1.90 10.05 22.26 0.22 -1.68 16 21 C -0.12 -2.45 9.83 22.29 0.22 -2.23 16 22 C -0.05 -1.32 6.31 22.32 0.14 -1.18 16 23 Cl -0.08 -2.20 27.26 -2.72 -0.07 -2.28 16 24 H 0.06 1.72 8.02 -2.39 -0.02 1.70 16 25 H 0.05 1.56 7.29 -2.38 -0.02 1.54 16 26 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.34 13.53 7.44 -89.69 -0.67 12.86 16 28 H 0.04 1.71 6.98 -2.38 -0.02 1.69 16 29 H 0.02 1.06 6.55 -2.39 -0.02 1.05 16 30 H 0.26 14.18 8.32 -92.71 -0.77 13.41 16 31 H 0.07 3.06 8.04 -2.39 -0.02 3.04 16 32 H 0.06 2.96 8.14 -2.39 -0.02 2.94 16 33 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 34 H 0.09 3.51 8.14 -2.39 -0.02 3.49 16 35 H 0.14 3.75 7.03 -2.91 -0.02 3.73 16 36 H 0.15 2.18 8.06 -2.91 -0.02 2.16 16 37 H 0.16 1.71 8.06 -2.91 -0.02 1.69 16 38 H 0.15 2.46 8.06 -2.91 -0.02 2.44 16 Total: -1.00 -59.09 328.89 3.26 -55.83 By element: Atomic # 1 Polarization: 25.00 SS G_CDS: 0.39 Total: 25.38 kcal Atomic # 6 Polarization: -47.62 SS G_CDS: 3.32 Total: -44.30 kcal Atomic # 7 Polarization: -77.49 SS G_CDS: -2.40 Total: -79.89 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.25 kcal Atomic # 17 Polarization: -2.20 SS G_CDS: -0.07 Total: -2.28 kcal Total: -59.09 3.26 -55.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088249754.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.135 kcal (2) G-P(sol) polarization free energy of solvation -59.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.832 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds