Wall clock time and date at job start Tue Mar 31 2020 01:17:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47191 * 2 1 4 4 N 1.46901 * 109.46935 * 120.00347 * 2 1 3 5 5 C 1.46897 * 110.99977 * 274.52067 * 4 2 1 6 6 C 1.52998 * 109.47217 * 185.66789 * 5 4 2 7 7 C 1.50701 * 115.55044 * 161.38917 * 6 5 4 8 8 H 1.07997 * 120.00484 * 147.01708 * 7 6 5 9 9 C 1.37882 * 120.00012 * 327.02306 * 7 6 5 10 10 N 1.31509 * 120.00305 * 164.13038 * 9 7 6 11 11 Si 1.86799 * 119.99759 * 344.12830 * 9 7 6 12 12 H 1.48493 * 109.47268 * 95.62736 * 11 9 7 13 13 H 1.48502 * 109.47042 * 215.62957 * 11 9 7 14 14 H 1.48500 * 109.47213 * 335.62290 * 11 9 7 15 15 C 1.53000 * 117.49954 * 15.68495 * 6 5 4 16 16 C 1.52995 * 117.50214 * 307.06051 * 6 5 4 17 17 C 1.50703 * 109.47203 * 239.99869 * 2 1 3 18 18 C 1.38228 * 120.01053 * 266.54939 * 17 2 1 19 19 C 1.38223 * 120.01525 * 179.97438 * 18 17 2 20 20 C 1.38261 * 120.02330 * 0.02562 * 19 18 17 21 21 C 1.38192 * 120.01586 * 359.97438 * 20 19 18 22 22 C 1.38333 * 120.00260 * 86.52875 * 17 2 1 23 23 Cl 1.73607 * 120.01531 * 359.74412 * 22 17 2 24 24 H 1.09009 * 109.47029 * 59.99933 * 1 2 3 25 25 H 1.08996 * 109.47100 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.46886 * 299.99921 * 1 2 3 27 27 H 1.00903 * 111.00253 * 38.47977 * 4 2 1 28 28 H 1.08996 * 109.47302 * 305.67604 * 5 4 2 29 29 H 1.09003 * 109.46930 * 65.67049 * 5 4 2 30 30 H 0.97001 * 120.00309 * 179.97438 * 10 9 7 31 31 H 1.09003 * 117.49444 * 0.02562 * 15 6 5 32 32 H 1.08996 * 117.50121 * 145.01656 * 15 6 5 33 33 H 1.08999 * 117.50154 * 214.97919 * 16 6 5 34 34 H 1.09000 * 117.49432 * 359.97438 * 16 6 5 35 35 H 1.08004 * 119.99124 * 359.95954 * 18 17 2 36 36 H 1.08001 * 119.98746 * 179.97438 * 19 18 17 37 37 H 1.08005 * 119.98700 * 179.97438 * 20 19 18 38 38 H 1.08002 * 120.00287 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 2.0932 0.2251 2.3441 6 6 2.7375 -0.4920 3.5321 7 6 3.2791 0.4039 4.6162 8 1 3.2539 0.0810 5.6464 9 6 3.8069 1.6360 4.2927 10 7 3.9899 2.5397 5.2303 11 14 4.2620 2.0214 2.5225 12 1 3.1396 2.7404 1.8681 13 1 5.4774 2.8744 2.4983 14 1 4.5311 0.7558 1.7937 15 6 3.4911 -1.7928 3.2480 16 6 2.1366 -1.8328 3.9585 17 6 2.0324 -0.7104 -1.2305 18 6 2.3307 -2.0591 -1.1767 19 6 2.7910 -2.7109 -2.3054 20 6 2.9537 -2.0143 -3.4886 21 6 2.6558 -0.6660 -3.5435 22 6 2.1945 -0.0131 -2.4141 23 17 1.8132 1.6791 -2.4843 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.4449 -1.4936 1.4144 28 1 2.6935 1.0942 2.0750 29 1 1.0882 0.5480 2.6161 30 1 4.3615 3.4064 5.0028 31 1 3.5281 -2.1375 2.2146 32 1 4.3789 -2.0009 3.8451 33 1 2.1334 -2.0672 5.0230 34 1 1.2820 -2.2039 3.3928 35 1 2.2044 -2.6035 -0.2526 36 1 3.0244 -3.7645 -2.2628 37 1 3.3138 -2.5241 -4.3700 38 1 2.7825 -0.1222 -4.4680 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088249755.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:35 Heat of formation + Delta-G solvation = 57.297363 kcal Electronic energy + Delta-G solvation = -19804.954187 eV Core-core repulsion = 16867.385037 eV Total energy + Delta-G solvation = -2937.569150 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -39.70435 -37.76842 -36.44809 -35.38803 -32.21562 -31.14725 -30.77498 -28.84782 -26.72774 -24.46269 -23.44835 -22.37262 -21.26727 -20.55928 -18.99527 -17.39975 -16.38917 -15.90733 -15.53303 -15.13320 -14.80041 -14.19619 -13.92611 -13.77525 -13.63307 -13.22298 -12.86067 -12.65894 -12.46020 -12.08448 -11.88713 -11.69665 -11.49314 -11.43881 -11.09899 -10.89266 -10.58402 -10.41029 -10.31971 -9.70818 -9.37745 -9.24901 -8.90509 -8.72741 -8.59825 -8.30294 -7.93420 -6.16467 -4.06671 1.11941 1.25955 2.12651 3.23466 3.43145 3.55831 3.59652 4.32867 4.41147 4.69763 4.81406 4.90040 4.93771 5.18065 5.27975 5.29257 5.40128 5.43561 5.61170 5.72461 5.82653 5.88856 5.93307 6.02045 6.08683 6.16359 6.25173 6.28666 6.37893 6.42539 6.62233 6.70603 6.76919 6.94090 7.14610 7.30328 7.39207 7.71942 7.81669 8.51508 8.90105 9.49360 10.95410 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.019193 B = 0.006212 C = 0.005417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.498495 B = 4506.683217 C = 5168.131865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.111 3.889 3 H 0.091 0.909 4 N -0.676 5.676 5 C 0.086 3.914 6 C 0.014 3.986 7 C -0.485 4.485 8 H 0.077 0.923 9 C 0.075 3.925 10 N -0.888 5.888 11 Si 0.884 3.116 12 H -0.286 1.286 13 H -0.302 1.302 14 H -0.247 1.247 15 C -0.194 4.194 16 C -0.198 4.198 17 C -0.052 4.052 18 C -0.083 4.083 19 C -0.118 4.118 20 C -0.118 4.118 21 C -0.114 4.114 22 C -0.036 4.036 23 Cl -0.074 7.074 24 H 0.061 0.939 25 H 0.058 0.942 26 H 0.064 0.936 27 H 0.338 0.662 28 H 0.065 0.935 29 H 0.033 0.967 30 H 0.265 0.735 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.066 0.934 35 H 0.137 0.863 36 H 0.126 0.874 37 H 0.127 0.873 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.622 -7.843 -17.913 20.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.000 4.000 3 H 0.109 0.891 4 N -0.307 5.307 5 C -0.041 4.041 6 C 0.013 3.987 7 C -0.523 4.523 8 H 0.095 0.905 9 C -0.129 4.129 10 N -0.524 5.524 11 Si 0.716 3.284 12 H -0.215 1.215 13 H -0.231 1.231 14 H -0.171 1.171 15 C -0.232 4.232 16 C -0.236 4.236 17 C -0.053 4.053 18 C -0.101 4.101 19 C -0.136 4.136 20 C -0.136 4.136 21 C -0.132 4.132 22 C -0.063 4.063 23 Cl -0.045 7.045 24 H 0.081 0.919 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.157 0.843 28 H 0.083 0.917 29 H 0.051 0.949 30 H 0.075 0.925 31 H 0.103 0.897 32 H 0.094 0.906 33 H 0.096 0.904 34 H 0.084 0.916 35 H 0.155 0.845 36 H 0.144 0.856 37 H 0.145 0.855 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -4.924 -7.420 -17.999 20.082 hybrid contribution -0.647 0.632 -0.665 1.123 sum -5.571 -6.788 -18.664 20.627 Atomic orbital electron populations 1.22434 0.95853 1.02279 1.02748 1.20529 0.93010 0.97959 0.88469 0.89129 1.60651 1.55917 1.10250 1.03881 1.21869 0.98592 0.94700 0.88940 1.19293 0.98375 0.86984 0.94044 1.20363 1.39351 0.99663 0.92887 0.90506 1.25015 0.94956 0.95524 0.97364 1.69955 1.43553 1.05134 1.33751 0.86926 0.76686 0.79018 0.85774 1.21515 1.23073 1.17091 1.23066 0.93918 1.06915 0.99329 1.22787 0.96019 1.05407 0.99362 1.19771 0.98210 0.94144 0.93191 1.21008 0.97315 0.93200 0.98615 1.21268 0.99208 1.00261 0.92833 1.21046 1.00599 0.93566 0.98406 1.20952 1.00174 0.94945 0.97165 1.20816 1.04651 0.85307 0.95547 1.98362 1.92864 1.14794 1.98452 0.91946 0.92244 0.91719 0.84319 0.91732 0.94874 0.92484 0.89690 0.90630 0.90385 0.91592 0.84536 0.85574 0.85499 0.85290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.30 9.15 37.16 0.34 -1.96 16 2 C 0.11 1.73 2.34 -68.86 -0.16 1.57 16 3 H 0.09 1.62 6.62 -51.93 -0.34 1.28 16 4 N -0.68 -11.70 3.73 -107.95 -0.40 -12.10 16 5 C 0.09 1.84 4.72 -3.83 -0.02 1.82 16 6 C 0.01 0.33 1.90 -155.66 -0.30 0.04 16 7 C -0.49 -13.68 9.57 -34.44 -0.33 -14.01 16 8 H 0.08 2.34 8.06 -52.49 -0.42 1.92 16 9 C 0.07 2.15 5.40 -17.82 -0.10 2.06 16 10 N -0.89 -27.01 13.96 55.43 0.77 -26.24 16 11 Si 0.88 22.47 24.31 -169.99 -4.13 18.34 16 12 H -0.29 -7.07 6.86 56.52 0.39 -6.68 16 13 H -0.30 -7.78 7.11 56.52 0.40 -7.38 16 14 H -0.25 -6.19 6.81 56.52 0.39 -5.80 16 15 C -0.19 -4.08 9.53 -26.73 -0.25 -4.34 16 16 C -0.20 -3.98 9.60 -26.73 -0.26 -4.24 16 17 C -0.05 -0.74 5.05 -104.59 -0.53 -1.27 16 18 C -0.08 -1.06 9.32 -39.59 -0.37 -1.43 16 19 C -0.12 -1.26 10.05 -39.58 -0.40 -1.66 16 20 C -0.12 -1.19 10.05 -39.59 -0.40 -1.59 16 21 C -0.11 -1.29 9.83 -39.55 -0.39 -1.68 16 22 C -0.04 -0.49 6.31 -39.50 -0.25 -0.74 16 23 Cl -0.07 -1.00 27.32 -51.86 -1.42 -2.42 16 24 H 0.06 0.77 8.09 -51.92 -0.42 0.35 16 25 H 0.06 0.70 8.13 -51.93 -0.42 0.28 16 26 H 0.06 0.88 7.60 -51.93 -0.39 0.49 16 27 H 0.34 5.15 6.63 -39.29 -0.26 4.89 16 28 H 0.07 1.52 1.55 -51.93 -0.08 1.44 16 29 H 0.03 0.69 7.61 -51.93 -0.40 0.29 16 30 H 0.27 7.58 8.31 -40.82 -0.34 7.24 16 31 H 0.08 1.65 7.05 -51.93 -0.37 1.28 16 32 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 33 H 0.08 1.60 8.14 -51.93 -0.42 1.18 16 34 H 0.07 1.14 7.31 -51.93 -0.38 0.76 16 35 H 0.14 1.67 6.93 -52.48 -0.36 1.30 16 36 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 37 H 0.13 0.94 8.06 -52.48 -0.42 0.51 16 38 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 LS Contribution 317.25 15.07 4.78 4.78 Total: -1.00 -30.14 317.25 -8.93 -39.07 By element: Atomic # 1 Polarization: 11.12 SS G_CDS: -5.13 Total: 5.99 kcal Atomic # 6 Polarization: -24.02 SS G_CDS: -3.40 Total: -27.42 kcal Atomic # 7 Polarization: -38.71 SS G_CDS: 0.37 Total: -38.34 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.13 Total: 18.34 kcal Atomic # 17 Polarization: -1.00 SS G_CDS: -1.42 Total: -2.42 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.14 -8.93 -39.07 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088249755.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.370 kcal (2) G-P(sol) polarization free energy of solvation -30.144 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.929 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.073 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds