Wall clock time and date at job start Tue Mar 31 2020 01:17:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47191 * 2 1 4 4 N 1.46901 * 109.46935 * 120.00347 * 2 1 3 5 5 C 1.46897 * 110.99977 * 274.52067 * 4 2 1 6 6 C 1.52998 * 109.47217 * 185.66789 * 5 4 2 7 7 C 1.50701 * 115.55044 * 161.38917 * 6 5 4 8 8 H 1.07997 * 120.00484 * 147.01708 * 7 6 5 9 9 C 1.37882 * 120.00012 * 327.02306 * 7 6 5 10 10 N 1.31509 * 120.00305 * 164.13038 * 9 7 6 11 11 Si 1.86799 * 119.99759 * 344.12830 * 9 7 6 12 12 H 1.48493 * 109.47268 * 95.62736 * 11 9 7 13 13 H 1.48502 * 109.47042 * 215.62957 * 11 9 7 14 14 H 1.48500 * 109.47213 * 335.62290 * 11 9 7 15 15 C 1.53000 * 117.49954 * 15.68495 * 6 5 4 16 16 C 1.52995 * 117.50214 * 307.06051 * 6 5 4 17 17 C 1.50703 * 109.47203 * 239.99869 * 2 1 3 18 18 C 1.38228 * 120.01053 * 266.54939 * 17 2 1 19 19 C 1.38223 * 120.01525 * 179.97438 * 18 17 2 20 20 C 1.38261 * 120.02330 * 0.02562 * 19 18 17 21 21 C 1.38192 * 120.01586 * 359.97438 * 20 19 18 22 22 C 1.38333 * 120.00260 * 86.52875 * 17 2 1 23 23 Cl 1.73607 * 120.01531 * 359.74412 * 22 17 2 24 24 H 1.09009 * 109.47029 * 59.99933 * 1 2 3 25 25 H 1.08996 * 109.47100 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.46886 * 299.99921 * 1 2 3 27 27 H 1.00903 * 111.00253 * 38.47977 * 4 2 1 28 28 H 1.08996 * 109.47302 * 305.67604 * 5 4 2 29 29 H 1.09003 * 109.46930 * 65.67049 * 5 4 2 30 30 H 0.97001 * 120.00309 * 179.97438 * 10 9 7 31 31 H 1.09003 * 117.49444 * 0.02562 * 15 6 5 32 32 H 1.08996 * 117.50121 * 145.01656 * 15 6 5 33 33 H 1.08999 * 117.50154 * 214.97919 * 16 6 5 34 34 H 1.09000 * 117.49432 * 359.97438 * 16 6 5 35 35 H 1.08004 * 119.99124 * 359.95954 * 18 17 2 36 36 H 1.08001 * 119.98746 * 179.97438 * 19 18 17 37 37 H 1.08005 * 119.98700 * 179.97438 * 20 19 18 38 38 H 1.08002 * 120.00287 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 2.0932 0.2251 2.3441 6 6 2.7375 -0.4920 3.5321 7 6 3.2791 0.4039 4.6162 8 1 3.2539 0.0810 5.6464 9 6 3.8069 1.6360 4.2927 10 7 3.9899 2.5397 5.2303 11 14 4.2620 2.0214 2.5225 12 1 3.1396 2.7404 1.8681 13 1 5.4774 2.8744 2.4983 14 1 4.5311 0.7558 1.7937 15 6 3.4911 -1.7928 3.2480 16 6 2.1366 -1.8328 3.9585 17 6 2.0324 -0.7104 -1.2305 18 6 2.3307 -2.0591 -1.1767 19 6 2.7910 -2.7109 -2.3054 20 6 2.9537 -2.0143 -3.4886 21 6 2.6558 -0.6660 -3.5435 22 6 2.1945 -0.0131 -2.4141 23 17 1.8132 1.6791 -2.4843 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.4449 -1.4936 1.4144 28 1 2.6935 1.0942 2.0750 29 1 1.0882 0.5480 2.6161 30 1 4.3615 3.4064 5.0028 31 1 3.5281 -2.1375 2.2146 32 1 4.3789 -2.0009 3.8451 33 1 2.1334 -2.0672 5.0230 34 1 1.2820 -2.2039 3.3928 35 1 2.2044 -2.6035 -0.2526 36 1 3.0244 -3.7645 -2.2628 37 1 3.3138 -2.5241 -4.3700 38 1 2.7825 -0.1222 -4.4680 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088249755.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:34 Heat of formation + Delta-G solvation = 40.249497 kcal Electronic energy + Delta-G solvation = -19805.693438 eV Core-core repulsion = 16867.385037 eV Total energy + Delta-G solvation = -2938.308401 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -40.69877 -39.28534 -37.41060 -36.73666 -34.38335 -32.33753 -31.63131 -29.92849 -28.61059 -26.05807 -24.54742 -23.33479 -22.94290 -21.63574 -20.90722 -18.73704 -17.87501 -17.39671 -16.79528 -16.45101 -16.06920 -15.59648 -15.06599 -14.96051 -14.86950 -14.64185 -14.48598 -14.09188 -13.75540 -13.67926 -13.15451 -12.87196 -12.62301 -12.47721 -12.42746 -12.39981 -12.09943 -12.01133 -11.70010 -11.48803 -11.29992 -11.16492 -10.46956 -10.29136 -9.77935 -9.61703 -9.34407 -8.39416 -6.31155 0.23894 0.39517 1.18266 1.20642 1.35492 1.51596 2.26135 2.72075 2.82140 3.12948 3.52048 3.70437 3.92637 4.10014 4.13067 4.22024 4.24826 4.30897 4.44586 4.45537 4.53235 4.60134 4.66224 4.80149 4.82379 4.99388 4.99734 5.05532 5.13355 5.22566 5.34478 5.42814 5.47017 5.54911 5.63086 5.71538 5.93986 5.98994 6.32130 6.46940 6.69350 7.26789 8.76901 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.019193 B = 0.006212 C = 0.005417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1458.498495 B = 4506.683217 C = 5168.131865 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.112 3.888 3 H 0.064 0.936 4 N -0.671 5.671 5 C 0.097 3.903 6 C -0.023 4.023 7 C -0.491 4.491 8 H 0.036 0.964 9 C 0.024 3.976 10 N -0.937 5.937 11 Si 0.952 3.048 12 H -0.280 1.280 13 H -0.310 1.310 14 H -0.240 1.240 15 C -0.178 4.178 16 C -0.173 4.173 17 C -0.072 4.072 18 C -0.094 4.094 19 C -0.114 4.114 20 C -0.111 4.111 21 C -0.117 4.117 22 C -0.054 4.054 23 Cl -0.086 7.086 24 H 0.067 0.933 25 H 0.077 0.923 26 H 0.055 0.945 27 H 0.352 0.648 28 H 0.042 0.958 29 H 0.032 0.968 30 H 0.267 0.733 31 H 0.109 0.891 32 H 0.062 0.938 33 H 0.068 0.932 34 H 0.104 0.896 35 H 0.141 0.859 36 H 0.154 0.846 37 H 0.160 0.840 38 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.111 -10.336 -21.005 24.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.002 3.998 3 H 0.082 0.918 4 N -0.303 5.303 5 C -0.031 4.031 6 C -0.024 4.024 7 C -0.528 4.528 8 H 0.054 0.946 9 C -0.175 4.175 10 N -0.576 5.576 11 Si 0.782 3.218 12 H -0.208 1.208 13 H -0.239 1.239 14 H -0.164 1.164 15 C -0.216 4.216 16 C -0.210 4.210 17 C -0.074 4.074 18 C -0.113 4.113 19 C -0.132 4.132 20 C -0.129 4.129 21 C -0.136 4.136 22 C -0.081 4.081 23 Cl -0.057 7.057 24 H 0.086 0.914 25 H 0.096 0.904 26 H 0.074 0.926 27 H 0.173 0.827 28 H 0.059 0.941 29 H 0.050 0.950 30 H 0.076 0.924 31 H 0.128 0.872 32 H 0.080 0.920 33 H 0.087 0.913 34 H 0.122 0.878 35 H 0.159 0.841 36 H 0.172 0.828 37 H 0.177 0.823 38 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -5.433 -9.943 -21.103 23.953 hybrid contribution -0.511 1.293 0.320 1.427 sum -5.943 -8.650 -20.783 23.283 Atomic orbital electron populations 1.22359 0.94263 1.03396 1.02577 1.20464 0.94345 0.96639 0.88342 0.91815 1.60518 1.56936 1.09945 1.02888 1.21507 0.97728 0.94325 0.89515 1.19249 1.01153 0.87692 0.94340 1.20630 1.38970 1.00570 0.92673 0.94616 1.25727 0.95166 0.95557 1.01037 1.70073 1.45720 1.05859 1.35898 0.85846 0.75957 0.78769 0.81231 1.20822 1.23928 1.16388 1.23014 0.93944 1.04080 1.00583 1.22833 0.96896 1.01841 0.99465 1.19695 1.00025 0.94968 0.92682 1.21155 0.97787 0.92625 0.99703 1.21621 0.97816 1.01603 0.92195 1.21466 0.99009 0.92988 0.99422 1.21254 0.99479 0.95748 0.97117 1.21010 1.05862 0.84910 0.96297 1.98354 1.93038 1.15836 1.98483 0.91406 0.90426 0.92587 0.82735 0.94068 0.95004 0.92417 0.87238 0.91981 0.91295 0.87758 0.84145 0.82815 0.82260 0.83636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.10 9.15 71.98 0.66 -3.44 16 2 C 0.11 3.31 2.34 44.17 0.10 3.41 16 3 H 0.06 2.23 6.62 -2.39 -0.02 2.21 16 4 N -0.67 -21.54 3.73 -495.45 -1.85 -23.39 16 5 C 0.10 4.03 4.72 86.30 0.41 4.44 16 6 C -0.02 -1.06 1.90 -52.93 -0.10 -1.16 16 7 C -0.49 -28.44 9.57 25.60 0.24 -28.19 16 8 H 0.04 2.29 8.06 -2.91 -0.02 2.26 16 9 C 0.02 1.40 5.40 84.66 0.46 1.86 16 10 N -0.94 -59.24 13.96 21.45 0.30 -58.94 16 11 Si 0.95 47.95 24.31 68.60 1.67 49.62 16 12 H -0.28 -13.61 6.86 99.48 0.68 -12.93 16 13 H -0.31 -15.76 7.11 99.48 0.71 -15.06 16 14 H -0.24 -11.65 6.81 99.48 0.68 -10.97 16 15 C -0.18 -7.11 9.53 30.59 0.29 -6.81 16 16 C -0.17 -6.55 9.60 30.59 0.29 -6.25 16 17 C -0.07 -1.89 5.05 -19.84 -0.10 -1.99 16 18 C -0.09 -2.08 9.32 22.26 0.21 -1.87 16 19 C -0.11 -1.95 10.05 22.27 0.22 -1.73 16 20 C -0.11 -1.76 10.05 22.26 0.22 -1.54 16 21 C -0.12 -2.30 9.83 22.29 0.22 -2.08 16 22 C -0.05 -1.35 6.31 22.32 0.14 -1.21 16 23 Cl -0.09 -2.25 27.32 -2.72 -0.07 -2.32 16 24 H 0.07 1.58 8.09 -2.38 -0.02 1.56 16 25 H 0.08 1.60 8.13 -2.39 -0.02 1.58 16 26 H 0.06 1.45 7.60 -2.39 -0.02 1.43 16 27 H 0.35 9.47 6.63 -89.69 -0.59 8.88 16 28 H 0.04 1.92 1.55 -2.39 0.00 1.92 16 29 H 0.03 1.30 7.61 -2.39 -0.02 1.28 16 30 H 0.27 15.84 8.31 -92.71 -0.77 15.07 16 31 H 0.11 3.84 7.05 -2.39 -0.02 3.82 16 32 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 33 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 34 H 0.10 3.15 7.31 -2.39 -0.02 3.14 16 35 H 0.14 2.89 6.93 -2.91 -0.02 2.87 16 36 H 0.15 1.74 8.06 -2.91 -0.02 1.72 16 37 H 0.16 1.48 8.06 -2.91 -0.02 1.45 16 38 H 0.15 2.27 8.06 -2.91 -0.02 2.25 16 Total: -1.00 -67.52 317.25 3.73 -63.78 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: 0.42 Total: 17.80 kcal Atomic # 6 Polarization: -49.82 SS G_CDS: 3.27 Total: -46.55 kcal Atomic # 7 Polarization: -80.78 SS G_CDS: -1.55 Total: -82.33 kcal Atomic # 14 Polarization: 47.95 SS G_CDS: 1.67 Total: 49.62 kcal Atomic # 17 Polarization: -2.25 SS G_CDS: -0.07 Total: -2.32 kcal Total: -67.52 3.73 -63.78 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088249755.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.033 kcal (2) G-P(sol) polarization free energy of solvation -67.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds