Wall clock time and date at job start Tue Mar 31 2020 01:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46926 * 2 1 4 4 N 1.46902 * 109.47182 * 239.99907 * 2 1 3 5 5 C 1.46905 * 110.99938 * 85.54538 * 4 2 1 6 6 C 1.52997 * 109.47104 * 184.03572 * 5 4 2 7 7 C 1.50702 * 115.55015 * 272.33318 * 6 5 4 8 8 H 1.07998 * 119.99674 * 114.85345 * 7 6 5 9 9 C 1.37879 * 119.99879 * 294.85434 * 7 6 5 10 10 N 1.31509 * 120.00059 * 356.17931 * 9 7 6 11 11 Si 1.86800 * 119.99616 * 176.18137 * 9 7 6 12 12 H 1.48493 * 109.47424 * 59.99973 * 11 9 7 13 13 H 1.48498 * 109.47032 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47069 * 299.99547 * 11 9 7 15 15 C 1.53004 * 117.49722 * 126.62613 * 6 5 4 16 16 C 1.53004 * 60.00078 * 252.50929 * 15 6 5 17 17 C 1.50698 * 109.47365 * 119.99838 * 2 1 3 18 18 C 1.38246 * 119.98483 * 73.79510 * 17 2 1 19 19 C 1.38219 * 120.00824 * 179.72762 * 18 17 2 20 20 C 1.38351 * 119.98923 * 0.54748 * 19 18 17 21 21 Cl 1.73595 * 120.01210 * 179.70378 * 20 19 18 22 22 C 1.38354 * 119.96903 * 359.72447 * 20 19 18 23 23 C 1.38208 * 119.99122 * 0.02562 * 22 20 19 24 24 H 1.08998 * 109.47012 * 299.99607 * 1 2 3 25 25 H 1.09002 * 109.47157 * 60.00422 * 1 2 3 26 26 H 1.09000 * 109.46926 * 180.02562 * 1 2 3 27 27 H 1.00898 * 111.00158 * 209.49525 * 4 2 1 28 28 H 1.08998 * 109.47011 * 64.03316 * 5 4 2 29 29 H 1.08997 * 109.46944 * 304.03722 * 5 4 2 30 30 H 0.97002 * 120.00019 * 185.03344 * 10 9 7 31 31 H 1.08999 * 117.49737 * 359.97438 * 15 6 5 32 32 H 1.09003 * 117.49649 * 145.02055 * 15 6 5 33 33 H 1.09001 * 117.50004 * 252.51316 * 16 15 6 34 34 H 1.08997 * 117.51434 * 107.48107 * 16 15 6 35 35 H 1.07997 * 119.99291 * 0.02562 * 18 17 2 36 36 H 1.08000 * 120.00318 * 180.27163 * 19 18 17 37 37 H 1.08002 * 119.99648 * 179.97438 * 22 20 19 38 38 H 1.08002 * 119.99209 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0948 0.2257 -2.3437 6 6 2.5109 -0.5510 -3.5944 7 6 3.9961 -0.6825 -3.8137 8 1 4.4639 -1.6551 -3.7728 9 6 4.7576 0.4388 -4.0665 10 7 4.1782 1.6128 -4.1909 11 14 6.6123 0.2902 -4.2323 12 1 6.9372 -0.6248 -5.3558 13 1 7.1940 1.6297 -4.5015 14 1 7.1801 -0.2523 -2.9719 15 6 1.6220 -0.4241 -4.8332 16 6 1.6267 -1.7232 -4.0249 17 6 2.0324 -0.7104 1.2304 18 6 1.9477 -2.0876 1.3162 19 6 2.4135 -2.7400 2.4421 20 6 2.9542 -2.0138 3.4882 21 17 3.5323 -2.8321 4.9058 22 6 3.0335 -0.6351 3.4041 23 6 2.5722 0.0159 2.2756 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 2.9132 -1.1280 -1.0261 28 1 2.8299 1.0036 -2.1377 29 1 1.1188 0.6824 -2.5076 30 1 4.7036 2.3889 -4.4406 31 1 0.7405 0.2124 -4.7570 32 1 2.1114 -0.4355 -5.8072 33 1 2.1193 -2.5893 -4.4671 34 1 0.7488 -1.9411 -3.4169 35 1 1.5219 -2.6540 0.5012 36 1 2.3513 -3.8163 2.5071 37 1 3.4551 -0.0677 4.2206 38 1 2.6344 1.0921 2.2097 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088249756.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:39 Heat of formation + Delta-G solvation = 32.809460 kcal Electronic energy + Delta-G solvation = -19178.025507 eV Core-core repulsion = 16239.394482 eV Total energy + Delta-G solvation = -2938.631025 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.56886 -37.20701 -36.51040 -35.03079 -32.00115 -31.09940 -30.79799 -28.67462 -25.74191 -24.63080 -23.10954 -22.43207 -21.01996 -20.00036 -19.03342 -17.17776 -16.13615 -15.69227 -15.40810 -14.69096 -14.44405 -14.03393 -13.87811 -13.64753 -13.43131 -13.13038 -12.84820 -12.36806 -11.93729 -11.77780 -11.58461 -11.55757 -11.20160 -11.10113 -10.95227 -10.87288 -10.81759 -10.51436 -10.43673 -10.11010 -9.36652 -9.02266 -8.78777 -8.56380 -8.48494 -8.08304 -7.58677 -6.04491 -4.10009 1.14370 1.31412 2.08213 3.28285 3.33483 3.36388 3.64332 4.38426 4.63582 4.84717 4.87679 4.92581 5.21146 5.38150 5.40683 5.54800 5.59038 5.71243 5.75522 5.96612 6.02372 6.12980 6.20794 6.22609 6.29942 6.44837 6.53807 6.60202 6.63294 6.82652 6.88552 6.93672 6.96157 7.15795 7.51161 7.58397 7.87730 7.92901 8.18815 8.48751 8.92076 9.54524 11.03092 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.017600 B = 0.004440 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.567680 B = 6304.860119 C = 7109.464160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.118 3.882 3 H 0.048 0.952 4 N -0.677 5.677 5 C 0.106 3.894 6 C 0.053 3.947 7 C -0.494 4.494 8 H 0.058 0.942 9 C 0.070 3.930 10 N -0.881 5.881 11 Si 0.887 3.113 12 H -0.277 1.277 13 H -0.288 1.288 14 H -0.277 1.277 15 C -0.179 4.179 16 C -0.192 4.192 17 C -0.072 4.072 18 C -0.084 4.084 19 C -0.113 4.113 20 C -0.040 4.040 21 Cl -0.083 7.083 22 C -0.114 4.114 23 C -0.104 4.104 24 H 0.048 0.952 25 H 0.058 0.942 26 H 0.060 0.940 27 H 0.344 0.656 28 H 0.047 0.953 29 H 0.040 0.960 30 H 0.260 0.740 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.142 0.858 36 H 0.131 0.869 37 H 0.129 0.871 38 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.948 -3.979 14.160 15.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.008 3.992 3 H 0.066 0.934 4 N -0.309 5.309 5 C -0.022 4.022 6 C 0.052 3.948 7 C -0.532 4.532 8 H 0.076 0.924 9 C -0.132 4.132 10 N -0.518 5.518 11 Si 0.715 3.285 12 H -0.203 1.203 13 H -0.213 1.213 14 H -0.202 1.202 15 C -0.218 4.218 16 C -0.229 4.229 17 C -0.073 4.073 18 C -0.102 4.102 19 C -0.132 4.132 20 C -0.067 4.067 21 Cl -0.054 7.054 22 C -0.132 4.132 23 C -0.122 4.122 24 H 0.067 0.933 25 H 0.077 0.923 26 H 0.079 0.921 27 H 0.163 0.837 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.078 0.922 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.160 0.840 36 H 0.149 0.851 37 H 0.147 0.853 38 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.462 -4.059 14.131 15.684 hybrid contribution 1.914 0.540 0.133 1.993 sum -3.548 -3.519 14.264 15.114 Atomic orbital electron populations 1.21763 0.94153 1.02158 1.00892 1.20466 0.95731 0.95485 0.87495 0.93424 1.60726 1.34191 1.32955 1.02992 1.21497 0.98020 0.93351 0.89339 1.18750 0.91600 0.94355 0.90050 1.20534 0.90375 0.93011 1.49252 0.92394 1.24971 0.98090 0.95282 0.94906 1.69956 1.35780 0.99317 1.46718 0.86743 0.85947 0.77135 0.78702 1.20254 1.21333 1.20220 1.22735 1.01741 0.99308 0.97974 1.22712 1.02739 0.92319 1.05144 1.20242 0.97109 0.94152 0.95769 1.21108 0.97977 0.94066 0.97061 1.21081 0.99108 1.00271 0.92732 1.20909 1.03181 0.92856 0.89711 1.98352 1.87708 1.79419 1.39910 1.20962 1.01003 0.92275 0.99000 1.21064 0.98223 1.00203 0.92750 0.93286 0.92267 0.92117 0.83729 0.93442 0.94112 0.92999 0.92154 0.90702 0.91250 0.90994 0.84025 0.85141 0.85299 0.85292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.79 9.34 37.16 0.35 -1.45 16 2 C 0.12 1.79 2.81 -68.86 -0.19 1.60 16 3 H 0.05 0.77 7.64 -51.93 -0.40 0.37 16 4 N -0.68 -12.27 5.69 -107.95 -0.61 -12.88 16 5 C 0.11 2.31 5.28 -3.82 -0.02 2.29 16 6 C 0.05 1.27 1.53 -155.66 -0.24 1.03 16 7 C -0.49 -13.08 8.82 -34.44 -0.30 -13.39 16 8 H 0.06 1.54 7.82 -52.49 -0.41 1.13 16 9 C 0.07 1.88 5.26 -17.82 -0.09 1.79 16 10 N -0.88 -24.36 12.43 55.43 0.69 -23.67 16 11 Si 0.89 20.80 29.54 -169.99 -5.02 15.78 16 12 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 13 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 14 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 15 C -0.18 -4.16 9.88 -26.73 -0.26 -4.42 16 16 C -0.19 -4.14 9.79 -26.73 -0.26 -4.40 16 17 C -0.07 -0.98 4.66 -104.62 -0.49 -1.47 16 18 C -0.08 -1.09 9.02 -39.59 -0.36 -1.44 16 19 C -0.11 -1.37 9.83 -39.55 -0.39 -1.75 16 20 C -0.04 -0.48 6.32 -39.50 -0.25 -0.73 16 21 Cl -0.08 -0.92 28.96 -51.86 -1.50 -2.42 16 22 C -0.11 -1.34 9.83 -39.55 -0.39 -1.73 16 23 C -0.10 -1.30 9.67 -39.59 -0.38 -1.68 16 24 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.06 0.85 7.43 -51.93 -0.39 0.47 16 26 H 0.06 0.81 8.07 -51.93 -0.42 0.39 16 27 H 0.34 6.60 8.18 -39.29 -0.32 6.28 16 28 H 0.05 1.17 7.13 -51.93 -0.37 0.80 16 29 H 0.04 0.87 7.14 -51.93 -0.37 0.50 16 30 H 0.26 6.95 8.32 -40.82 -0.34 6.61 16 31 H 0.06 1.32 8.04 -51.93 -0.42 0.91 16 32 H 0.07 1.82 8.14 -51.93 -0.42 1.40 16 33 H 0.07 1.49 8.14 -51.93 -0.42 1.07 16 34 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 35 H 0.14 1.82 7.91 -52.49 -0.42 1.41 16 36 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 37 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 38 H 0.13 1.43 7.99 -52.49 -0.42 1.01 16 LS Contribution 334.33 15.07 5.04 5.04 Total: -1.00 -26.75 334.33 -10.29 -37.04 By element: Atomic # 1 Polarization: 12.47 SS G_CDS: -5.60 Total: 6.88 kcal Atomic # 6 Polarization: -22.47 SS G_CDS: -3.28 Total: -25.75 kcal Atomic # 7 Polarization: -36.63 SS G_CDS: 0.07 Total: -36.55 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -1.50 Total: -2.42 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -26.75 -10.29 -37.04 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088249756.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.846 kcal (2) G-P(sol) polarization free energy of solvation -26.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.037 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds