Wall clock time and date at job start Tue Mar 31 2020 01:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46926 * 2 1 4 4 N 1.46902 * 109.47182 * 239.99907 * 2 1 3 5 5 C 1.46905 * 110.99938 * 85.54538 * 4 2 1 6 6 C 1.52997 * 109.47104 * 184.03572 * 5 4 2 7 7 C 1.50702 * 115.55015 * 272.33318 * 6 5 4 8 8 H 1.07998 * 119.99674 * 114.85345 * 7 6 5 9 9 C 1.37879 * 119.99879 * 294.85434 * 7 6 5 10 10 N 1.31509 * 120.00059 * 356.17931 * 9 7 6 11 11 Si 1.86800 * 119.99616 * 176.18137 * 9 7 6 12 12 H 1.48493 * 109.47424 * 59.99973 * 11 9 7 13 13 H 1.48498 * 109.47032 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47069 * 299.99547 * 11 9 7 15 15 C 1.53004 * 117.49722 * 126.62613 * 6 5 4 16 16 C 1.53004 * 60.00078 * 252.50929 * 15 6 5 17 17 C 1.50698 * 109.47365 * 119.99838 * 2 1 3 18 18 C 1.38246 * 119.98483 * 73.79510 * 17 2 1 19 19 C 1.38219 * 120.00824 * 179.72762 * 18 17 2 20 20 C 1.38351 * 119.98923 * 0.54748 * 19 18 17 21 21 Cl 1.73595 * 120.01210 * 179.70378 * 20 19 18 22 22 C 1.38354 * 119.96903 * 359.72447 * 20 19 18 23 23 C 1.38208 * 119.99122 * 0.02562 * 22 20 19 24 24 H 1.08998 * 109.47012 * 299.99607 * 1 2 3 25 25 H 1.09002 * 109.47157 * 60.00422 * 1 2 3 26 26 H 1.09000 * 109.46926 * 180.02562 * 1 2 3 27 27 H 1.00898 * 111.00158 * 209.49525 * 4 2 1 28 28 H 1.08998 * 109.47011 * 64.03316 * 5 4 2 29 29 H 1.08997 * 109.46944 * 304.03722 * 5 4 2 30 30 H 0.97002 * 120.00019 * 185.03344 * 10 9 7 31 31 H 1.08999 * 117.49737 * 359.97438 * 15 6 5 32 32 H 1.09003 * 117.49649 * 145.02055 * 15 6 5 33 33 H 1.09001 * 117.50004 * 252.51316 * 16 15 6 34 34 H 1.08997 * 117.51434 * 107.48107 * 16 15 6 35 35 H 1.07997 * 119.99291 * 0.02562 * 18 17 2 36 36 H 1.08000 * 120.00318 * 180.27163 * 19 18 17 37 37 H 1.08002 * 119.99648 * 179.97438 * 22 20 19 38 38 H 1.08002 * 119.99209 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0948 0.2257 -2.3437 6 6 2.5109 -0.5510 -3.5944 7 6 3.9961 -0.6825 -3.8137 8 1 4.4639 -1.6551 -3.7728 9 6 4.7576 0.4388 -4.0665 10 7 4.1782 1.6128 -4.1909 11 14 6.6123 0.2902 -4.2323 12 1 6.9372 -0.6248 -5.3558 13 1 7.1940 1.6297 -4.5015 14 1 7.1801 -0.2523 -2.9719 15 6 1.6220 -0.4241 -4.8332 16 6 1.6267 -1.7232 -4.0249 17 6 2.0324 -0.7104 1.2304 18 6 1.9477 -2.0876 1.3162 19 6 2.4135 -2.7400 2.4421 20 6 2.9542 -2.0138 3.4882 21 17 3.5323 -2.8321 4.9058 22 6 3.0335 -0.6351 3.4041 23 6 2.5722 0.0159 2.2756 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 2.9132 -1.1280 -1.0261 28 1 2.8299 1.0036 -2.1377 29 1 1.1188 0.6824 -2.5076 30 1 4.7036 2.3889 -4.4406 31 1 0.7405 0.2124 -4.7570 32 1 2.1114 -0.4355 -5.8072 33 1 2.1193 -2.5893 -4.4671 34 1 0.7488 -1.9411 -3.4169 35 1 1.5219 -2.6540 0.5012 36 1 2.3513 -3.8163 2.5071 37 1 3.4551 -0.0677 4.2206 38 1 2.6344 1.0921 2.2097 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088249756.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:37 Heat of formation + Delta-G solvation = 20.568490 kcal Electronic energy + Delta-G solvation = -19178.556315 eV Core-core repulsion = 16239.394482 eV Total energy + Delta-G solvation = -2939.161833 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.59423 -38.78356 -37.58447 -36.36583 -34.03238 -32.18332 -31.95074 -29.78731 -27.69113 -26.21399 -24.17847 -23.52005 -22.80800 -21.17289 -20.89819 -18.31318 -17.84472 -16.87750 -16.63082 -16.61194 -15.71660 -15.56677 -15.15522 -14.89861 -14.50183 -14.36625 -14.25190 -13.64445 -13.43839 -13.32098 -12.96252 -12.86606 -12.75485 -12.63492 -12.46575 -12.25282 -12.15122 -11.94763 -11.76686 -11.69234 -11.19986 -10.73110 -10.42221 -9.97349 -9.94406 -9.53110 -9.14240 -8.08405 -6.18955 0.15938 0.36613 1.16141 1.41382 1.42628 1.49199 2.42786 2.66182 3.16141 3.29585 3.73336 3.77854 3.91250 3.99461 4.32026 4.37461 4.42575 4.54429 4.57192 4.70768 4.75615 4.80225 4.86999 5.00931 5.03882 5.08590 5.10511 5.20796 5.26181 5.28919 5.32525 5.39685 5.62573 5.67626 5.70435 5.85682 5.89706 6.36536 6.47685 6.62067 6.90843 7.47907 8.98181 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.017600 B = 0.004440 C = 0.003937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1590.567680 B = 6304.860119 C = 7109.464160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.119 3.881 3 H 0.036 0.964 4 N -0.668 5.668 5 C 0.125 3.875 6 C 0.029 3.971 7 C -0.507 4.507 8 H 0.050 0.950 9 C 0.028 3.972 10 N -0.906 5.906 11 Si 0.943 3.057 12 H -0.274 1.274 13 H -0.286 1.286 14 H -0.273 1.273 15 C -0.187 4.187 16 C -0.165 4.165 17 C -0.085 4.085 18 C -0.089 4.089 19 C -0.114 4.114 20 C -0.046 4.046 21 Cl -0.073 7.073 22 C -0.114 4.114 23 C -0.109 4.109 24 H 0.068 0.932 25 H 0.048 0.952 26 H 0.064 0.936 27 H 0.337 0.663 28 H 0.012 0.988 29 H 0.041 0.959 30 H 0.259 0.741 31 H 0.070 0.930 32 H 0.056 0.944 33 H 0.069 0.931 34 H 0.091 0.909 35 H 0.141 0.859 36 H 0.147 0.853 37 H 0.148 0.852 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.001 -4.764 15.541 17.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.010 3.990 3 H 0.054 0.946 4 N -0.298 5.298 5 C -0.004 4.004 6 C 0.028 3.972 7 C -0.545 4.545 8 H 0.068 0.932 9 C -0.172 4.172 10 N -0.544 5.544 11 Si 0.769 3.231 12 H -0.200 1.200 13 H -0.212 1.212 14 H -0.198 1.198 15 C -0.225 4.225 16 C -0.203 4.203 17 C -0.085 4.085 18 C -0.107 4.107 19 C -0.133 4.133 20 C -0.072 4.072 21 Cl -0.044 7.044 22 C -0.132 4.132 23 C -0.127 4.127 24 H 0.087 0.913 25 H 0.067 0.933 26 H 0.083 0.917 27 H 0.155 0.845 28 H 0.030 0.970 29 H 0.060 0.940 30 H 0.068 0.932 31 H 0.088 0.912 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.109 0.891 35 H 0.158 0.842 36 H 0.164 0.836 37 H 0.166 0.834 38 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -5.525 -4.858 15.521 17.176 hybrid contribution 1.919 0.749 -0.242 2.074 sum -3.605 -4.109 15.279 16.228 Atomic orbital electron populations 1.21712 0.92763 1.02537 1.01322 1.20488 0.96728 0.94756 0.87035 0.94563 1.60702 1.33541 1.32199 1.03386 1.21128 0.96690 0.92643 0.89959 1.18875 0.90863 0.96365 0.91079 1.20794 0.92024 0.92684 1.48995 0.93173 1.25588 1.01719 0.95052 0.94837 1.70062 1.36985 0.99743 1.47621 0.85852 0.81546 0.77001 0.78670 1.19980 1.21200 1.19799 1.22693 1.01905 1.00918 0.96989 1.22674 1.02426 0.91342 1.03816 1.20130 0.98384 0.94520 0.95497 1.21119 0.98319 0.93803 0.97481 1.21254 0.98578 1.01157 0.92305 1.21067 1.02926 0.93186 0.90063 1.98357 1.87546 1.79235 1.39285 1.21182 1.00439 0.92397 0.99194 1.21215 0.97956 1.00852 0.92699 0.91339 0.93337 0.91712 0.84498 0.96967 0.94009 0.93207 0.91167 0.92508 0.91202 0.89083 0.84156 0.83554 0.83428 0.84261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.25 9.34 71.98 0.67 -2.58 16 2 C 0.12 3.55 2.81 44.17 0.12 3.67 16 3 H 0.04 1.17 7.64 -2.39 -0.02 1.15 16 4 N -0.67 -23.97 5.69 -495.44 -2.82 -26.78 16 5 C 0.12 5.48 5.28 86.30 0.46 5.94 16 6 C 0.03 1.38 1.53 -52.92 -0.08 1.30 16 7 C -0.51 -27.03 8.82 25.60 0.23 -26.80 16 8 H 0.05 2.68 7.82 -2.91 -0.02 2.66 16 9 C 0.03 1.52 5.26 84.66 0.45 1.97 16 10 N -0.91 -50.82 12.43 21.45 0.27 -50.55 16 11 Si 0.94 42.83 29.54 68.60 2.03 44.85 16 12 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 13 H -0.29 -12.86 7.11 99.48 0.71 -12.15 16 14 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 15 C -0.19 -8.64 9.88 30.60 0.30 -8.33 16 16 C -0.17 -6.96 9.79 30.60 0.30 -6.66 16 17 C -0.08 -2.22 4.66 -19.86 -0.09 -2.31 16 18 C -0.09 -2.18 9.02 22.27 0.20 -1.98 16 19 C -0.11 -2.54 9.83 22.29 0.22 -2.32 16 20 C -0.05 -1.01 6.32 22.32 0.14 -0.87 16 21 Cl -0.07 -1.47 28.96 -2.72 -0.08 -1.55 16 22 C -0.11 -2.44 9.83 22.29 0.22 -2.22 16 23 C -0.11 -2.55 9.67 22.26 0.22 -2.33 16 24 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.05 1.35 7.43 -2.39 -0.02 1.33 16 26 H 0.06 1.62 8.07 -2.39 -0.02 1.60 16 27 H 0.34 12.91 8.18 -89.70 -0.73 12.18 16 28 H 0.01 0.61 7.13 -2.39 -0.02 0.60 16 29 H 0.04 1.79 7.14 -2.39 -0.02 1.78 16 30 H 0.26 14.00 8.32 -92.71 -0.77 13.23 16 31 H 0.07 3.06 8.04 -2.39 -0.02 3.04 16 32 H 0.06 2.79 8.14 -2.39 -0.02 2.77 16 33 H 0.07 2.92 8.14 -2.39 -0.02 2.90 16 34 H 0.09 3.48 8.14 -2.39 -0.02 3.46 16 35 H 0.14 3.44 7.91 -2.91 -0.02 3.42 16 36 H 0.15 2.71 8.06 -2.91 -0.02 2.69 16 37 H 0.15 2.56 8.06 -2.91 -0.02 2.53 16 38 H 0.14 2.90 7.99 -2.91 -0.02 2.88 16 Total: -1.00 -56.06 334.33 3.06 -53.00 By element: Atomic # 1 Polarization: 24.26 SS G_CDS: 0.31 Total: 24.57 kcal Atomic # 6 Polarization: -46.89 SS G_CDS: 3.35 Total: -43.54 kcal Atomic # 7 Polarization: -74.79 SS G_CDS: -2.55 Total: -77.34 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.85 kcal Atomic # 17 Polarization: -1.47 SS G_CDS: -0.08 Total: -1.55 kcal Total: -56.06 3.06 -53.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088249756.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.570 kcal (2) G-P(sol) polarization free energy of solvation -56.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds