Wall clock time and date at job start Tue Mar 31 2020 01:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46509 * 2 1 4 4 N 1.46900 * 109.47284 * 119.99650 * 2 1 3 5 5 C 1.46897 * 111.00162 * 278.20169 * 4 2 1 6 6 C 1.52999 * 109.47233 * 174.99750 * 5 4 2 7 7 C 1.50700 * 115.55381 * 151.42191 * 6 5 4 8 8 H 1.08000 * 120.00265 * 143.45024 * 7 6 5 9 9 C 1.37882 * 119.99689 * 323.45453 * 7 6 5 10 10 N 1.31513 * 119.99617 * 171.74187 * 9 7 6 11 11 Si 1.86801 * 120.00108 * 351.74035 * 9 7 6 12 12 H 1.48494 * 109.46885 * 95.66447 * 11 9 7 13 13 H 1.48493 * 109.47067 * 215.66834 * 11 9 7 14 14 H 1.48500 * 109.46893 * 335.66773 * 11 9 7 15 15 C 1.53002 * 117.49835 * 5.70791 * 6 5 4 16 16 C 1.53000 * 60.00130 * 252.51550 * 15 6 5 17 17 C 1.50699 * 109.47152 * 239.99953 * 2 1 3 18 18 C 1.38238 * 119.98684 * 286.54497 * 17 2 1 19 19 C 1.38217 * 120.01193 * 179.72554 * 18 17 2 20 20 C 1.38352 * 119.98555 * 0.55041 * 19 18 17 21 21 Cl 1.73605 * 120.01244 * 179.74939 * 20 19 18 22 22 C 1.38353 * 119.97476 * 359.72502 * 20 19 18 23 23 C 1.38215 * 119.98680 * 359.97438 * 22 20 19 24 24 H 1.08997 * 109.47618 * 60.00486 * 1 2 3 25 25 H 1.09006 * 109.47349 * 299.99566 * 1 2 3 26 26 H 1.09004 * 109.46505 * 180.02562 * 1 2 3 27 27 H 1.00900 * 110.99597 * 154.24633 * 4 2 1 28 28 H 1.09004 * 109.46972 * 294.99579 * 5 4 2 29 29 H 1.09000 * 109.47160 * 54.99514 * 5 4 2 30 30 H 0.97002 * 119.99652 * 179.97438 * 10 9 7 31 31 H 1.08998 * 117.49786 * 0.02562 * 15 6 5 32 32 H 1.08993 * 117.49747 * 145.02316 * 15 6 5 33 33 H 1.08999 * 117.49785 * 252.51331 * 16 15 6 34 34 H 1.09000 * 117.51655 * 107.48489 * 16 15 6 35 35 H 1.07997 * 119.99216 * 0.02562 * 18 17 2 36 36 H 1.07999 * 120.00597 * 180.27280 * 19 18 17 37 37 H 1.07995 * 120.00548 * 179.97438 * 22 20 19 38 38 H 1.07999 * 119.99482 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0197 -0.6924 1.1995 5 6 2.0108 0.2024 2.3644 6 6 2.4068 -0.5848 3.6152 7 6 3.0830 0.2144 4.6992 8 1 2.8836 -0.0067 5.7374 9 6 3.9563 1.2279 4.3656 10 7 4.4205 2.0296 5.2990 11 14 4.4801 1.4621 2.5879 12 1 3.6210 2.4920 1.9504 13 1 5.8973 1.9029 2.5434 14 1 4.3381 0.1774 1.8567 15 6 2.8516 -2.0363 3.4250 16 6 1.4890 -1.7294 4.0495 17 6 2.0323 -0.7104 -1.2304 18 6 1.9412 -2.0869 -1.3191 19 6 2.3966 -2.7385 -2.4498 20 6 2.9541 -2.0139 -3.4881 21 17 3.5322 -2.8322 -4.9059 22 6 3.0503 -0.6367 -3.3964 23 6 2.5889 0.0143 -2.2679 24 1 -0.3634 0.5137 -0.8900 25 1 -0.3634 0.5138 0.8901 26 1 -0.3632 -1.0277 0.0005 27 1 2.9401 -1.0759 1.0451 28 1 2.7217 1.0132 2.2052 29 1 1.0112 0.6163 2.4970 30 1 5.0352 2.7424 5.0644 31 1 2.8626 -2.4303 2.4088 32 1 3.6337 -2.4134 4.0839 33 1 1.3747 -1.9046 5.1192 34 1 0.6030 -1.9214 3.4443 35 1 1.5096 -2.6528 -0.5068 36 1 2.3213 -3.8136 -2.5208 37 1 3.4858 -0.0706 -4.2064 38 1 2.6635 1.0894 -2.1963 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088249757.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:17:41 Heat of formation + Delta-G solvation = 40.395944 kcal Electronic energy + Delta-G solvation = -19491.511557 eV Core-core repulsion = 16553.209507 eV Total energy + Delta-G solvation = -2938.302050 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -40.72453 -39.27822 -37.61121 -36.39025 -34.35268 -32.29158 -32.01605 -29.84891 -28.57588 -26.20098 -24.24139 -23.57794 -22.95920 -21.29358 -20.85457 -18.73490 -17.96465 -17.67953 -16.98338 -16.68451 -15.72414 -15.49130 -15.28376 -14.89941 -14.81009 -14.44600 -14.33745 -14.18064 -13.90266 -13.36821 -13.05479 -12.95212 -12.68713 -12.51325 -12.42273 -12.24064 -11.92719 -11.84610 -11.75550 -11.52163 -11.31526 -11.16688 -10.62200 -10.24387 -10.00449 -9.58750 -9.36376 -8.34711 -6.33691 0.10873 0.32953 1.14104 1.21339 1.32193 1.42820 2.26334 2.60915 2.86014 3.20801 3.52963 3.66245 3.84257 3.96510 4.17640 4.19114 4.28035 4.38067 4.47387 4.52180 4.56172 4.64536 4.71447 4.85757 4.94879 4.98593 5.02698 5.05381 5.21246 5.24372 5.25943 5.33659 5.46687 5.54058 5.65915 5.69165 5.81593 6.02635 6.33860 6.37195 6.70755 7.26640 8.80872 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.023156 B = 0.004597 C = 0.004352 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.882289 B = 6089.779220 C = 6432.448975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.114 3.886 3 H 0.040 0.960 4 N -0.667 5.667 5 C 0.099 3.901 6 C -0.020 4.020 7 C -0.490 4.490 8 H 0.030 0.970 9 C 0.012 3.988 10 N -0.947 5.947 11 Si 0.979 3.021 12 H -0.280 1.280 13 H -0.314 1.314 14 H -0.242 1.242 15 C -0.184 4.184 16 C -0.163 4.163 17 C -0.088 4.088 18 C -0.086 4.086 19 C -0.114 4.114 20 C -0.045 4.045 21 Cl -0.073 7.073 22 C -0.114 4.114 23 C -0.109 4.109 24 H 0.069 0.931 25 H 0.052 0.948 26 H 0.068 0.932 27 H 0.342 0.658 28 H 0.004 0.996 29 H 0.077 0.923 30 H 0.266 0.734 31 H 0.106 0.894 32 H 0.062 0.938 33 H 0.063 0.937 34 H 0.102 0.898 35 H 0.145 0.855 36 H 0.148 0.852 37 H 0.148 0.852 38 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.663 -7.482 -21.639 23.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.005 3.995 3 H 0.058 0.942 4 N -0.300 5.300 5 C -0.029 4.029 6 C -0.021 4.021 7 C -0.528 4.528 8 H 0.049 0.951 9 C -0.185 4.185 10 N -0.586 5.586 11 Si 0.809 3.191 12 H -0.208 1.208 13 H -0.243 1.243 14 H -0.166 1.166 15 C -0.222 4.222 16 C -0.201 4.201 17 C -0.089 4.089 18 C -0.104 4.104 19 C -0.132 4.132 20 C -0.071 4.071 21 Cl -0.044 7.044 22 C -0.132 4.132 23 C -0.128 4.128 24 H 0.088 0.912 25 H 0.071 0.929 26 H 0.087 0.913 27 H 0.162 0.838 28 H 0.021 0.979 29 H 0.095 0.905 30 H 0.075 0.925 31 H 0.125 0.875 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.120 0.880 35 H 0.163 0.837 36 H 0.165 0.835 37 H 0.165 0.835 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -6.128 -7.694 -21.559 23.697 hybrid contribution 1.374 1.077 -0.168 1.754 sum -4.754 -6.617 -21.727 23.205 Atomic orbital electron populations 1.21743 0.92166 1.03004 1.01725 1.20554 0.97284 0.94809 0.86853 0.94242 1.60847 1.31326 1.35186 1.02593 1.21565 0.99365 0.92587 0.89406 1.19232 1.01008 0.87819 0.94086 1.20714 1.24482 1.15524 0.92102 0.95124 1.25938 0.95739 0.94695 1.02147 1.70062 1.33826 1.18732 1.35984 0.85393 0.74474 0.79145 0.80054 1.20795 1.24347 1.16645 1.23019 0.96897 1.01275 1.01030 1.22680 0.93982 1.04518 0.98879 1.20052 0.98746 0.94603 0.95456 1.21139 0.98170 0.93647 0.97491 1.21275 0.98438 1.01240 0.92263 1.21104 1.02656 0.93226 0.90154 1.98366 1.87512 1.79209 1.39322 1.21184 1.00461 0.92439 0.99138 1.21232 0.97846 1.00897 0.92838 0.91228 0.92879 0.91258 0.83806 0.97919 0.90508 0.92478 0.87541 0.91953 0.91849 0.87990 0.83720 0.83451 0.83474 0.84242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.86 9.30 71.98 0.67 -2.20 16 2 C 0.11 2.94 2.80 44.17 0.12 3.06 16 3 H 0.04 1.10 7.70 -2.39 -0.02 1.08 16 4 N -0.67 -20.43 4.71 -495.45 -2.34 -22.77 16 5 C 0.10 3.85 4.42 86.30 0.38 4.23 16 6 C -0.02 -0.91 1.86 -52.93 -0.10 -1.01 16 7 C -0.49 -27.96 9.59 25.60 0.25 -27.71 16 8 H 0.03 1.96 8.06 -2.91 -0.02 1.94 16 9 C 0.01 0.69 5.45 84.66 0.46 1.15 16 10 N -0.95 -59.15 13.96 21.45 0.30 -58.86 16 11 Si 0.98 45.45 24.32 68.60 1.67 47.12 16 12 H -0.28 -12.46 6.94 99.48 0.69 -11.77 16 13 H -0.31 -14.94 7.11 99.48 0.71 -14.23 16 14 H -0.24 -10.01 5.31 99.48 0.53 -9.48 16 15 C -0.18 -7.23 9.39 30.59 0.29 -6.94 16 16 C -0.16 -6.39 9.91 30.60 0.30 -6.08 16 17 C -0.09 -1.98 4.67 -19.86 -0.09 -2.07 16 18 C -0.09 -1.78 9.09 22.26 0.20 -1.58 16 19 C -0.11 -2.16 9.83 22.29 0.22 -1.94 16 20 C -0.04 -0.87 6.32 22.32 0.14 -0.73 16 21 Cl -0.07 -1.32 28.96 -2.72 -0.08 -1.39 16 22 C -0.11 -2.15 9.83 22.29 0.22 -1.93 16 23 C -0.11 -2.24 9.67 22.27 0.22 -2.03 16 24 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.05 1.27 7.19 -2.38 -0.02 1.26 16 26 H 0.07 1.47 8.06 -2.38 -0.02 1.45 16 27 H 0.34 10.82 5.97 -89.69 -0.54 10.29 16 28 H 0.00 0.16 1.89 -2.39 0.00 0.15 16 29 H 0.08 2.89 7.12 -2.39 -0.02 2.88 16 30 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 31 H 0.11 3.58 6.35 -2.39 -0.02 3.57 16 32 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 33 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 34 H 0.10 3.46 8.14 -2.39 -0.02 3.44 16 35 H 0.15 2.88 7.92 -2.91 -0.02 2.86 16 36 H 0.15 2.28 8.06 -2.91 -0.02 2.25 16 37 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 38 H 0.14 2.50 7.99 -2.91 -0.02 2.48 16 Total: -1.00 -63.22 318.65 3.16 -60.06 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: 0.33 Total: 21.62 kcal Atomic # 6 Polarization: -49.05 SS G_CDS: 3.28 Total: -45.77 kcal Atomic # 7 Polarization: -79.59 SS G_CDS: -2.04 Total: -81.62 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 1.67 Total: 47.12 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -0.08 Total: -1.39 kcal Total: -63.22 3.16 -60.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088249757.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.451 kcal (2) G-P(sol) polarization free energy of solvation -63.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.055 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds