Wall clock time and date at job start Tue Mar 31 2020 01:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46900 * 111.00102 * 2 1 4 4 C 1.50706 * 109.46562 * 293.94618 * 3 2 1 5 5 C 1.38240 * 119.99963 * 105.00338 * 4 3 2 6 6 C 1.38221 * 120.01059 * 180.02562 * 5 4 3 7 7 C 1.38270 * 120.02426 * 359.95717 * 6 5 4 8 8 C 1.38184 * 120.01490 * 0.02562 * 7 6 5 9 9 C 1.38322 * 120.00958 * 284.99896 * 4 3 2 10 10 Cl 1.73602 * 120.01732 * 0.02562 * 9 4 3 11 11 C 1.46904 * 110.99682 * 123.95039 * 2 1 3 12 12 C 1.52996 * 109.47463 * 72.11597 * 11 2 1 13 13 C 1.50701 * 115.54996 * 55.33234 * 12 11 2 14 14 H 1.07999 * 120.00495 * 265.10729 * 13 12 11 15 15 C 1.37882 * 119.99613 * 85.11510 * 13 12 11 16 16 N 1.31506 * 120.00046 * 3.88253 * 15 13 12 17 17 Si 1.86803 * 119.99612 * 183.88977 * 15 13 12 18 18 H 1.48498 * 109.47404 * 90.00146 * 17 15 13 19 19 H 1.48507 * 109.46543 * 209.99791 * 17 15 13 20 20 H 1.48499 * 109.47232 * 329.99282 * 17 15 13 21 21 C 1.53008 * 117.49810 * 269.66988 * 12 11 2 22 22 C 1.52995 * 117.49974 * 201.00921 * 12 11 2 23 23 H 1.09005 * 109.46553 * 58.20175 * 1 2 3 24 24 H 1.09002 * 109.46790 * 178.19164 * 1 2 3 25 25 H 1.08994 * 109.47445 * 298.19535 * 1 2 3 26 26 H 1.09005 * 109.47091 * 173.95339 * 3 2 1 27 27 H 1.08992 * 109.47537 * 53.94909 * 3 2 1 28 28 H 1.07992 * 119.99592 * 0.02562 * 5 4 3 29 29 H 1.07998 * 119.98982 * 179.97438 * 6 5 4 30 30 H 1.08001 * 119.98655 * 180.02562 * 7 6 5 31 31 H 1.08001 * 120.01193 * 179.72435 * 8 7 6 32 32 H 1.09004 * 109.47198 * 192.11685 * 11 2 1 33 33 H 1.08998 * 109.47061 * 312.10916 * 11 2 1 34 34 H 0.97005 * 120.00041 * 185.01987 * 16 15 13 35 35 H 1.08998 * 117.49436 * 359.97438 * 21 12 11 36 36 H 1.08994 * 117.50041 * 145.01622 * 21 12 11 37 37 H 1.09002 * 117.49871 * 214.97517 * 22 12 11 38 38 H 1.08993 * 117.50250 * 359.97230 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0470 -1.2986 5 6 0.6299 2.9933 -1.3305 6 6 0.3006 3.6127 -2.5215 7 6 0.9789 3.2867 -3.6814 8 6 1.9861 2.3411 -3.6507 9 6 2.3158 1.7203 -2.4587 10 17 3.5803 0.5315 -2.4196 11 6 1.9954 -0.7659 1.1377 12 6 1.7646 -2.2592 0.8977 13 6 2.3249 -2.8048 -0.3905 14 1 1.6951 -2.8793 -1.2646 15 6 3.6417 -3.2088 -0.4530 16 7 4.3874 -3.1900 0.6300 17 14 4.3664 -3.7828 -2.0763 18 1 4.9476 -2.6218 -2.7970 19 1 5.4294 -4.7867 -1.8162 20 1 3.2984 -4.3964 -2.9058 21 6 0.4556 -2.8631 1.4105 22 6 1.7748 -3.1808 2.1189 23 1 -0.3632 0.5416 -0.8735 24 1 -0.3633 -1.0272 -0.0324 25 1 -0.3634 0.4855 0.9057 26 1 3.0798 1.3444 0.1083 27 1 1.5611 1.9274 0.8308 28 1 0.1002 3.2488 -0.4247 29 1 -0.4866 4.3517 -2.5460 30 1 0.7214 3.7713 -4.6116 31 1 2.5129 2.0833 -4.5576 32 1 3.0637 -0.5754 1.2409 33 1 1.4822 -0.4609 2.0496 34 1 5.3318 -3.4042 0.5724 35 1 -0.2409 -2.1966 1.9191 36 1 0.0000 -3.6552 0.8163 37 1 2.1865 -4.1819 1.9905 38 1 1.9464 -2.7234 3.0932 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088259319.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:44:06 Heat of formation + Delta-G solvation = 36.418383 kcal Electronic energy + Delta-G solvation = -19966.915596 eV Core-core repulsion = 17028.441065 eV Total energy + Delta-G solvation = -2938.474530 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.47184 -39.02527 -37.11319 -36.68918 -33.83259 -32.46591 -31.52476 -28.49278 -27.79960 -27.05160 -23.69747 -23.46371 -22.81254 -21.69170 -20.80821 -17.98339 -17.70824 -16.74030 -16.57516 -16.25641 -16.24928 -15.69870 -15.38883 -14.76882 -14.63906 -14.29503 -14.12528 -13.62309 -13.42277 -13.08273 -12.88613 -12.80081 -12.59464 -12.46604 -12.35978 -12.25207 -12.17680 -12.05157 -11.91299 -11.46191 -11.15158 -10.80306 -10.23578 -9.86639 -9.77068 -9.48141 -8.83582 -7.97679 -6.00066 0.31742 0.38404 1.35755 1.40313 1.46793 1.52352 2.49630 2.71829 3.29748 3.34379 3.67752 3.82602 3.91729 4.18984 4.31929 4.40165 4.50046 4.51378 4.54781 4.65053 4.70189 4.73494 4.80725 4.86638 4.91620 5.03059 5.06766 5.12308 5.26854 5.35393 5.40573 5.52862 5.55350 5.72168 5.77207 5.92887 5.98038 6.40324 6.48543 6.65551 7.00781 7.63660 9.11396 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.017788 B = 0.007317 C = 0.005680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1573.692711 B = 3825.970108 C = 4928.691231 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.520 5.520 3 C 0.095 3.905 4 C -0.080 4.080 5 C -0.106 4.106 6 C -0.115 4.115 7 C -0.107 4.107 8 C -0.129 4.129 9 C -0.037 4.037 10 Cl -0.078 7.078 11 C 0.122 3.878 12 C 0.032 3.968 13 C -0.450 4.450 14 H 0.040 0.960 15 C 0.036 3.964 16 N -0.913 5.913 17 Si 0.915 3.085 18 H -0.280 1.280 19 H -0.291 1.291 20 H -0.273 1.273 21 C -0.189 4.189 22 C -0.161 4.161 23 H 0.064 0.936 24 H 0.060 0.940 25 H 0.027 0.973 26 H 0.062 0.938 27 H 0.050 0.950 28 H 0.145 0.855 29 H 0.160 0.840 30 H 0.159 0.841 31 H 0.135 0.865 32 H 0.040 0.960 33 H 0.015 0.985 34 H 0.252 0.748 35 H 0.087 0.913 36 H 0.071 0.929 37 H 0.056 0.944 38 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.406 15.345 -4.793 18.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.243 5.243 3 C -0.032 4.032 4 C -0.081 4.081 5 C -0.124 4.124 6 C -0.132 4.132 7 C -0.125 4.125 8 C -0.148 4.148 9 C -0.064 4.064 10 Cl -0.049 7.049 11 C -0.006 4.006 12 C 0.032 3.968 13 C -0.488 4.488 14 H 0.058 0.942 15 C -0.162 4.162 16 N -0.554 5.554 17 Si 0.743 3.257 18 H -0.206 1.206 19 H -0.217 1.217 20 H -0.198 1.198 21 C -0.226 4.226 22 C -0.200 4.200 23 H 0.083 0.917 24 H 0.079 0.921 25 H 0.045 0.955 26 H 0.081 0.919 27 H 0.069 0.931 28 H 0.162 0.838 29 H 0.177 0.823 30 H 0.176 0.824 31 H 0.153 0.847 32 H 0.059 0.941 33 H 0.033 0.967 34 H 0.061 0.939 35 H 0.106 0.894 36 H 0.089 0.911 37 H 0.075 0.925 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.961 14.885 -5.144 17.646 hybrid contribution 0.944 -0.572 0.006 1.103 sum -7.018 14.313 -5.138 16.748 Atomic orbital electron populations 1.22320 0.87287 1.01835 0.99726 1.61638 1.07735 1.10791 1.44177 1.20988 0.99839 0.88985 0.93420 1.19775 0.96875 0.97557 0.93930 1.21275 0.95720 0.95414 1.00003 1.21553 1.00110 0.99890 0.91684 1.21440 0.94503 0.96474 1.00115 1.21291 0.99551 0.97754 0.96169 1.21156 0.94673 0.94545 0.96051 1.98436 1.51065 1.56665 1.98753 1.21336 0.97231 0.93389 0.88615 1.18876 0.94853 0.89910 0.93193 1.20316 0.95284 1.38105 0.95107 0.94186 1.25247 0.97853 0.95967 0.97109 1.70075 1.05869 1.51688 1.27738 0.86209 0.78428 0.78047 0.83037 1.20643 1.21680 1.19780 1.23005 0.90941 1.03818 1.04855 1.22395 1.00493 1.00756 0.96306 0.91734 0.92115 0.95457 0.91938 0.93149 0.83754 0.82289 0.82352 0.84693 0.94130 0.96734 0.93870 0.89429 0.91077 0.92508 0.91261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.20 9.09 127.69 1.16 2.36 16 2 N -0.52 -20.12 4.31 -927.04 -3.99 -24.12 16 3 C 0.10 3.17 4.42 85.56 0.38 3.55 16 4 C -0.08 -2.37 4.42 -19.84 -0.09 -2.45 16 5 C -0.11 -2.32 9.07 22.27 0.20 -2.12 16 6 C -0.11 -2.01 10.05 22.27 0.22 -1.79 16 7 C -0.11 -2.01 10.05 22.26 0.22 -1.79 16 8 C -0.13 -3.27 9.83 22.29 0.22 -3.05 16 9 C -0.04 -1.19 6.31 22.32 0.14 -1.04 16 10 Cl -0.08 -3.08 27.55 -2.72 -0.07 -3.15 16 11 C 0.12 5.35 4.88 86.30 0.42 5.77 16 12 C 0.03 1.57 1.24 -52.93 -0.07 1.51 16 13 C -0.45 -24.74 8.54 25.60 0.22 -24.53 16 14 H 0.04 2.29 7.82 -2.91 -0.02 2.27 16 15 C 0.04 2.05 5.43 84.66 0.46 2.51 16 16 N -0.91 -53.43 12.66 21.45 0.27 -53.15 16 17 Si 0.91 45.86 29.54 68.60 2.03 47.89 16 18 H -0.28 -13.98 7.11 99.48 0.71 -13.28 16 19 H -0.29 -14.42 7.11 99.48 0.71 -13.72 16 20 H -0.27 -13.44 7.11 99.48 0.71 -12.73 16 21 C -0.19 -8.01 8.36 30.62 0.26 -7.76 16 22 C -0.16 -7.66 9.19 30.62 0.28 -7.38 16 23 H 0.06 1.97 6.78 -2.38 -0.02 1.95 16 24 H 0.06 2.20 6.12 -2.39 -0.01 2.18 16 25 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.06 2.33 7.31 -2.38 -0.02 2.31 16 27 H 0.05 1.45 7.93 -2.39 -0.02 1.43 16 28 H 0.14 2.54 8.00 -2.91 -0.02 2.51 16 29 H 0.16 1.67 8.06 -2.91 -0.02 1.64 16 30 H 0.16 1.90 8.06 -2.91 -0.02 1.87 16 31 H 0.14 3.11 8.06 -2.91 -0.02 3.09 16 32 H 0.04 2.01 7.81 -2.38 -0.02 1.99 16 33 H 0.01 0.59 8.00 -2.39 -0.02 0.57 16 34 H 0.25 14.38 8.32 -92.70 -0.77 13.61 16 35 H 0.09 3.21 8.05 -2.39 -0.02 3.19 16 36 H 0.07 3.05 8.14 -2.39 -0.02 3.03 16 37 H 0.06 2.98 8.14 -2.39 -0.02 2.96 16 38 H 0.07 3.07 8.14 -2.39 -0.02 3.06 16 Total: -1.00 -63.32 329.11 3.29 -60.03 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: 1.03 Total: 8.72 kcal Atomic # 6 Polarization: -40.24 SS G_CDS: 4.03 Total: -36.21 kcal Atomic # 7 Polarization: -73.55 SS G_CDS: -3.72 Total: -77.27 kcal Atomic # 14 Polarization: 45.86 SS G_CDS: 2.03 Total: 47.89 kcal Atomic # 17 Polarization: -3.08 SS G_CDS: -0.07 Total: -3.15 kcal Total: -63.32 3.29 -60.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088259319.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.447 kcal (2) G-P(sol) polarization free energy of solvation -63.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.127 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.291 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds