Wall clock time and date at job start Tue Mar 31 2020 01:18:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47026 * 2 1 4 4 C 1.50698 * 109.47444 * 240.00033 * 2 1 3 5 5 C 1.38243 * 120.00198 * 267.78399 * 4 2 1 6 6 C 1.38228 * 120.00899 * 179.97438 * 5 4 2 7 7 C 1.38262 * 120.02632 * 0.02754 * 6 5 4 8 8 C 1.38189 * 120.01300 * 0.22792 * 7 6 5 9 9 C 1.38332 * 120.01161 * 87.75667 * 4 2 1 10 10 Cl 1.73600 * 120.00698 * 0.05283 * 9 4 2 11 11 N 1.46900 * 109.47357 * 119.99764 * 2 1 3 12 12 C 1.46901 * 110.99955 * 302.10178 * 11 2 1 13 13 C 1.50703 * 109.47105 * 165.29827 * 12 11 2 14 14 H 1.07999 * 120.00012 * 4.57883 * 13 12 11 15 15 C 1.37880 * 119.99613 * 184.57666 * 13 12 11 16 16 N 1.31513 * 120.00651 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99781 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47014 * 60.00053 * 17 15 13 19 19 H 1.48499 * 109.47413 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47399 * 300.00408 * 17 15 13 21 21 C 1.46901 * 111.00411 * 178.14907 * 11 2 1 22 22 C 1.52997 * 117.50164 * 128.13900 * 21 11 2 23 23 C 1.53006 * 117.49661 * 59.47863 * 21 11 2 24 24 H 1.09000 * 109.47043 * 60.00462 * 1 2 3 25 25 H 1.09004 * 109.46840 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46896 * 299.99981 * 1 2 3 27 27 H 1.07999 * 119.99442 * 0.02562 * 5 4 2 28 28 H 1.07993 * 119.98233 * 179.97438 * 6 5 4 29 29 H 1.07997 * 119.99063 * 179.97438 * 7 6 5 30 30 H 1.08004 * 120.00669 * 179.74860 * 8 7 6 31 31 H 1.09000 * 109.47508 * 285.30453 * 12 11 2 32 32 H 1.09005 * 109.47125 * 45.30406 * 12 11 2 33 33 H 0.96994 * 120.00246 * 179.97438 * 16 15 13 34 34 H 1.09002 * 115.54626 * 273.81257 * 21 11 2 35 35 H 1.09005 * 117.49692 * 0.02562 * 22 21 11 36 36 H 1.08998 * 117.50199 * 145.02037 * 22 21 11 37 37 H 1.08997 * 117.49488 * 214.98295 * 23 21 11 38 38 H 1.08989 * 117.49979 * 0.02562 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 6 2.3065 -2.0645 -1.1833 6 6 2.7668 -2.7164 -2.3120 7 6 2.9539 -2.0145 -3.4884 8 6 2.6853 -0.6597 -3.5352 9 6 2.2188 -0.0078 -2.4073 10 17 1.8754 1.6929 -2.4669 11 7 2.0197 -0.6924 1.1994 12 6 1.5081 -0.0559 2.4205 13 6 1.7196 -0.9776 3.5939 14 1 2.2531 -1.9072 3.4611 15 6 1.2321 -0.6340 4.8371 16 7 0.5821 0.4978 4.9988 17 14 1.4949 -1.7760 6.2917 18 1 2.9507 -1.9641 6.5166 19 1 0.8788 -1.1819 7.5052 20 1 0.8639 -3.0903 6.0096 21 6 3.4875 -0.7505 1.2115 22 6 4.2037 -0.2593 2.4711 23 6 4.2472 0.5774 1.1899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 2.1601 -2.6134 -0.2648 28 1 2.9812 -3.7742 -2.2746 29 1 3.3140 -2.5242 -4.3698 30 1 2.8353 -0.1107 -4.4531 31 1 2.0400 0.8797 2.5929 32 1 0.4433 0.1473 2.3056 33 1 0.2389 0.7393 5.8732 34 1 3.9290 -1.5918 0.6772 35 1 3.5857 0.1067 3.2910 36 1 5.1166 -0.7770 2.7653 37 1 5.1888 0.6096 0.6418 38 1 3.6580 1.4940 1.1672 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000101545006.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:18:16 Heat of formation + Delta-G solvation = 56.598377 kcal Electronic energy + Delta-G solvation = -20068.884773 eV Core-core repulsion = 17131.285313 eV Total energy + Delta-G solvation = -2937.599460 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -39.71166 -37.94408 -36.26069 -34.19578 -32.84245 -30.63921 -30.58496 -28.49247 -26.82747 -23.57145 -22.78559 -21.96449 -21.62400 -20.55450 -18.63194 -16.86679 -16.37092 -16.03952 -15.32082 -14.99868 -14.56605 -14.10534 -13.93616 -13.59237 -13.42464 -13.01790 -12.31956 -12.22018 -12.08416 -11.45686 -11.41742 -11.37983 -11.24260 -11.14204 -10.88086 -10.80460 -10.70193 -10.45861 -10.02889 -9.81693 -9.71495 -9.28710 -9.16888 -8.66687 -8.46953 -8.41238 -7.23940 -6.02579 -4.01200 1.31245 1.45617 2.31384 3.33569 3.38213 3.40945 3.80094 4.39412 4.55770 4.78489 4.89653 5.03268 5.17951 5.31759 5.41610 5.56180 5.68259 5.70624 5.75216 5.83235 5.88360 5.94512 6.10001 6.20827 6.27311 6.33308 6.43209 6.54317 6.66480 6.69255 6.76109 6.77528 7.00574 7.20387 7.24449 7.42795 7.82676 8.09881 8.20125 8.52571 9.04948 9.59946 11.07720 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.024061 B = 0.005342 C = 0.005068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.448465 B = 5240.395076 C = 5523.700683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.116 3.884 3 H 0.051 0.949 4 C -0.048 4.048 5 C -0.083 4.083 6 C -0.123 4.123 7 C -0.121 4.121 8 C -0.118 4.118 9 C -0.035 4.035 10 Cl -0.076 7.076 11 N -0.498 5.498 12 C 0.183 3.817 13 C -0.495 4.495 14 H 0.064 0.936 15 C 0.055 3.945 16 N -0.899 5.899 17 Si 0.895 3.105 18 H -0.277 1.277 19 H -0.289 1.289 20 H -0.277 1.277 21 C 0.034 3.966 22 C -0.171 4.171 23 C -0.229 4.229 24 H 0.050 0.950 25 H 0.061 0.939 26 H 0.072 0.928 27 H 0.147 0.853 28 H 0.124 0.876 29 H 0.124 0.876 30 H 0.126 0.874 31 H -0.006 1.006 32 H 0.042 0.958 33 H 0.261 0.739 34 H 0.104 0.896 35 H 0.137 0.863 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.140 -2.181 -15.085 15.794 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.008 3.992 3 H 0.069 0.931 4 C -0.050 4.050 5 C -0.101 4.101 6 C -0.141 4.141 7 C -0.139 4.139 8 C -0.137 4.137 9 C -0.062 4.062 10 Cl -0.047 7.047 11 N -0.222 5.222 12 C 0.058 3.942 13 C -0.533 4.533 14 H 0.082 0.918 15 C -0.147 4.147 16 N -0.539 5.539 17 Si 0.723 3.277 18 H -0.203 1.203 19 H -0.215 1.215 20 H -0.203 1.203 21 C -0.075 4.075 22 C -0.208 4.208 23 C -0.268 4.268 24 H 0.069 0.931 25 H 0.081 0.919 26 H 0.091 0.909 27 H 0.165 0.835 28 H 0.142 0.858 29 H 0.142 0.858 30 H 0.144 0.856 31 H 0.012 0.988 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.121 0.879 35 H 0.155 0.845 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 3.803 -2.398 -14.950 15.611 hybrid contribution 0.488 0.455 0.783 1.029 sum 4.291 -1.943 -14.167 14.929 Atomic orbital electron populations 1.21873 0.93467 1.02616 1.01783 1.20509 0.95464 0.95148 0.88094 0.93104 1.19869 0.97340 0.94170 0.93592 1.21279 0.96424 0.93386 0.99002 1.21287 0.99721 1.00106 0.92976 1.21002 1.01100 0.93494 0.98324 1.20904 1.00797 0.94901 0.97109 1.20829 1.04703 0.85002 0.95688 1.98348 1.93751 1.14130 1.98494 1.62236 1.04971 1.52574 1.02416 1.19960 0.95884 0.93228 0.85121 1.21064 1.34692 1.05530 0.92040 0.91803 1.24956 0.95440 0.95365 0.98895 1.69939 1.37723 1.22432 1.23764 0.86604 0.78370 0.80980 0.81726 1.20292 1.21514 1.20270 1.22536 0.87720 0.95128 1.02115 1.23605 1.01537 1.02161 0.93472 1.23295 1.02332 0.96999 1.04183 0.93111 0.91949 0.90889 0.83528 0.85828 0.85817 0.85609 0.98823 0.93990 0.92903 0.87883 0.84518 0.90335 0.90355 0.89808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.46 8.93 37.16 0.33 -2.13 16 2 C 0.12 2.10 1.64 -68.87 -0.11 1.98 16 3 H 0.05 0.97 6.02 -51.93 -0.31 0.66 16 4 C -0.05 -0.77 4.38 -104.59 -0.46 -1.22 16 5 C -0.08 -1.22 7.87 -39.58 -0.31 -1.53 16 6 C -0.12 -1.49 10.05 -39.58 -0.40 -1.88 16 7 C -0.12 -1.35 10.05 -39.59 -0.40 -1.75 16 8 C -0.12 -1.45 9.83 -39.55 -0.39 -1.84 16 9 C -0.04 -0.51 6.31 -39.50 -0.25 -0.76 16 10 Cl -0.08 -1.08 27.34 -51.86 -1.42 -2.49 16 11 N -0.50 -10.19 3.65 -221.52 -0.81 -11.00 16 12 C 0.18 4.48 4.09 -4.97 -0.02 4.46 16 13 C -0.49 -13.08 6.59 -34.44 -0.23 -13.31 16 14 H 0.06 1.70 7.63 -52.49 -0.40 1.30 16 15 C 0.05 1.49 5.46 -17.82 -0.10 1.39 16 16 N -0.90 -25.80 13.29 55.43 0.74 -25.06 16 17 Si 0.90 21.15 29.54 -169.99 -5.02 16.13 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 21 C 0.03 0.66 4.70 -67.71 -0.32 0.34 16 22 C -0.17 -3.40 8.75 -26.69 -0.23 -3.63 16 23 C -0.23 -4.18 9.36 -26.69 -0.25 -4.43 16 24 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 25 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 26 H 0.07 1.40 6.07 -51.93 -0.32 1.09 16 27 H 0.15 2.32 7.06 -52.49 -0.37 1.95 16 28 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 29 H 0.12 1.04 8.06 -52.49 -0.42 0.61 16 30 H 0.13 1.29 8.06 -52.48 -0.42 0.86 16 31 H -0.01 -0.16 6.19 -51.93 -0.32 -0.48 16 32 H 0.04 1.11 5.57 -51.93 -0.29 0.82 16 33 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 34 H 0.10 1.83 6.94 -51.93 -0.36 1.47 16 35 H 0.14 3.23 4.82 -51.93 -0.25 2.98 16 36 H 0.08 1.41 8.14 -51.93 -0.42 0.98 16 37 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 38 H 0.08 1.64 7.15 -51.94 -0.37 1.26 16 LS Contribution 315.67 15.07 4.76 4.76 Total: -1.00 -27.58 315.67 -9.97 -37.55 By element: Atomic # 1 Polarization: 9.53 SS G_CDS: -5.09 Total: 4.44 kcal Atomic # 6 Polarization: -21.19 SS G_CDS: -3.13 Total: -24.32 kcal Atomic # 7 Polarization: -35.99 SS G_CDS: -0.07 Total: -36.06 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -1.42 Total: -2.49 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -27.58 -9.97 -37.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101545006.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.146 kcal (2) G-P(sol) polarization free energy of solvation -27.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds