Wall clock time and date at job start Tue Mar 31 2020 01:18:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47026 * 2 1 4 4 C 1.50698 * 109.47444 * 240.00033 * 2 1 3 5 5 C 1.38243 * 120.00198 * 267.78399 * 4 2 1 6 6 C 1.38228 * 120.00899 * 179.97438 * 5 4 2 7 7 C 1.38262 * 120.02632 * 0.02754 * 6 5 4 8 8 C 1.38189 * 120.01300 * 0.22792 * 7 6 5 9 9 C 1.38332 * 120.01161 * 87.75667 * 4 2 1 10 10 Cl 1.73600 * 120.00698 * 0.05283 * 9 4 2 11 11 N 1.46900 * 109.47357 * 119.99764 * 2 1 3 12 12 C 1.46901 * 110.99955 * 302.10178 * 11 2 1 13 13 C 1.50703 * 109.47105 * 165.29827 * 12 11 2 14 14 H 1.07999 * 120.00012 * 4.57883 * 13 12 11 15 15 C 1.37880 * 119.99613 * 184.57666 * 13 12 11 16 16 N 1.31513 * 120.00651 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 119.99781 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47014 * 60.00053 * 17 15 13 19 19 H 1.48499 * 109.47413 * 180.02562 * 17 15 13 20 20 H 1.48500 * 109.47399 * 300.00408 * 17 15 13 21 21 C 1.46901 * 111.00411 * 178.14907 * 11 2 1 22 22 C 1.52997 * 117.50164 * 128.13900 * 21 11 2 23 23 C 1.53006 * 117.49661 * 59.47863 * 21 11 2 24 24 H 1.09000 * 109.47043 * 60.00462 * 1 2 3 25 25 H 1.09004 * 109.46840 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46896 * 299.99981 * 1 2 3 27 27 H 1.07999 * 119.99442 * 0.02562 * 5 4 2 28 28 H 1.07993 * 119.98233 * 179.97438 * 6 5 4 29 29 H 1.07997 * 119.99063 * 179.97438 * 7 6 5 30 30 H 1.08004 * 120.00669 * 179.74860 * 8 7 6 31 31 H 1.09000 * 109.47508 * 285.30453 * 12 11 2 32 32 H 1.09005 * 109.47125 * 45.30406 * 12 11 2 33 33 H 0.96994 * 120.00246 * 179.97438 * 16 15 13 34 34 H 1.09002 * 115.54626 * 273.81257 * 21 11 2 35 35 H 1.09005 * 117.49692 * 0.02562 * 22 21 11 36 36 H 1.08998 * 117.50199 * 145.02037 * 22 21 11 37 37 H 1.08997 * 117.49488 * 214.98295 * 23 21 11 38 38 H 1.08989 * 117.49979 * 0.02562 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 6 2.3065 -2.0645 -1.1833 6 6 2.7668 -2.7164 -2.3120 7 6 2.9539 -2.0145 -3.4884 8 6 2.6853 -0.6597 -3.5352 9 6 2.2188 -0.0078 -2.4073 10 17 1.8754 1.6929 -2.4669 11 7 2.0197 -0.6924 1.1994 12 6 1.5081 -0.0559 2.4205 13 6 1.7196 -0.9776 3.5939 14 1 2.2531 -1.9072 3.4611 15 6 1.2321 -0.6340 4.8371 16 7 0.5821 0.4978 4.9988 17 14 1.4949 -1.7760 6.2917 18 1 2.9507 -1.9641 6.5166 19 1 0.8788 -1.1819 7.5052 20 1 0.8639 -3.0903 6.0096 21 6 3.4875 -0.7505 1.2115 22 6 4.2037 -0.2593 2.4711 23 6 4.2472 0.5774 1.1899 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 2.1601 -2.6134 -0.2648 28 1 2.9812 -3.7742 -2.2746 29 1 3.3140 -2.5242 -4.3698 30 1 2.8353 -0.1107 -4.4531 31 1 2.0400 0.8797 2.5929 32 1 0.4433 0.1473 2.3056 33 1 0.2389 0.7393 5.8732 34 1 3.9290 -1.5918 0.6772 35 1 3.5857 0.1067 3.2910 36 1 5.1166 -0.7770 2.7653 37 1 5.1888 0.6096 0.6418 38 1 3.6580 1.4940 1.1672 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000101545006.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:18:12 Heat of formation + Delta-G solvation = 42.992504 kcal Electronic energy + Delta-G solvation = -20069.474768 eV Core-core repulsion = 17131.285313 eV Total energy + Delta-G solvation = -2938.189455 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.98519 -39.32623 -37.33035 -35.62685 -34.86818 -32.12899 -31.59325 -29.89243 -28.69694 -25.14979 -24.19285 -23.23918 -23.10397 -21.95675 -20.16007 -18.48224 -17.80718 -17.62270 -16.74947 -16.31379 -16.14842 -15.65161 -15.27505 -14.82083 -14.62068 -14.29470 -14.09361 -13.75718 -13.62568 -12.97449 -12.86632 -12.73961 -12.69696 -12.56572 -12.39740 -12.31202 -12.16405 -11.88764 -11.74204 -11.43779 -11.32497 -11.20754 -10.78349 -10.51741 -9.70355 -9.52762 -8.93689 -8.12992 -6.18023 0.29460 0.44140 1.25151 1.43944 1.45773 1.53268 2.43930 2.78414 2.99040 3.18912 3.26843 3.72219 4.03867 4.13794 4.14943 4.21694 4.24423 4.36292 4.43377 4.50364 4.60160 4.70474 4.78643 4.85324 4.94033 5.07801 5.12379 5.16669 5.23174 5.28439 5.34907 5.39770 5.57585 5.63060 5.64412 5.76281 6.00572 6.13933 6.42935 6.65773 6.94220 7.47132 8.97357 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.024061 B = 0.005342 C = 0.005068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.448465 B = 5240.395076 C = 5523.700683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.121 3.879 3 H 0.036 0.964 4 C -0.067 4.067 5 C -0.097 4.097 6 C -0.116 4.116 7 C -0.108 4.108 8 C -0.116 4.116 9 C -0.047 4.047 10 Cl -0.083 7.083 11 N -0.500 5.500 12 C 0.201 3.799 13 C -0.495 4.495 14 H 0.062 0.938 15 C 0.003 3.997 16 N -0.936 5.936 17 Si 0.960 3.040 18 H -0.268 1.268 19 H -0.289 1.289 20 H -0.271 1.271 21 C 0.036 3.964 22 C -0.183 4.183 23 C -0.210 4.210 24 H 0.068 0.932 25 H 0.060 0.940 26 H 0.045 0.955 27 H 0.130 0.870 28 H 0.151 0.849 29 H 0.162 0.838 30 H 0.149 0.851 31 H -0.035 1.035 32 H 0.017 0.983 33 H 0.261 0.739 34 H 0.125 0.875 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.107 0.893 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.734 -4.161 -17.258 18.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.013 3.987 3 H 0.054 0.946 4 C -0.069 4.069 5 C -0.115 4.115 6 C -0.133 4.133 7 C -0.126 4.126 8 C -0.134 4.134 9 C -0.074 4.074 10 Cl -0.054 7.054 11 N -0.223 5.223 12 C 0.075 3.925 13 C -0.533 4.533 14 H 0.080 0.920 15 C -0.195 4.195 16 N -0.577 5.577 17 Si 0.785 3.215 18 H -0.193 1.193 19 H -0.215 1.215 20 H -0.196 1.196 21 C -0.073 4.073 22 C -0.220 4.220 23 C -0.250 4.250 24 H 0.087 0.913 25 H 0.079 0.921 26 H 0.064 0.936 27 H 0.148 0.852 28 H 0.169 0.831 29 H 0.180 0.820 30 H 0.167 0.833 31 H -0.018 1.018 32 H 0.035 0.965 33 H 0.070 0.930 34 H 0.143 0.857 35 H 0.114 0.886 36 H 0.120 0.880 37 H 0.125 0.875 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.407 -4.388 -17.142 18.502 hybrid contribution 0.013 1.070 1.341 1.716 sum 5.420 -3.317 -15.800 17.030 Atomic orbital electron populations 1.21794 0.93739 1.02269 1.01282 1.20431 0.95357 0.94579 0.88363 0.94635 1.19606 0.99587 0.94777 0.92890 1.21208 0.97788 0.92889 0.99663 1.21578 0.98179 1.01413 0.92176 1.21444 0.99065 0.92930 0.99118 1.21248 0.99538 0.95633 0.97013 1.20961 1.05561 0.84814 0.96069 1.98345 1.93869 1.14697 1.98492 1.62139 1.06210 1.52206 1.01739 1.19562 0.94129 0.91954 0.86825 1.21272 1.33915 1.05326 0.92807 0.91980 1.25761 0.95290 0.96742 1.01686 1.70073 1.39086 1.24286 1.24295 0.85577 0.78617 0.79024 0.78258 1.19339 1.21471 1.19581 1.22660 0.86784 0.96239 1.01657 1.23444 1.02150 1.03566 0.92865 1.23239 1.02971 0.95737 1.03006 0.91273 0.92112 0.93585 0.85219 0.83126 0.82036 0.83325 1.01781 0.96457 0.93021 0.85744 0.88603 0.88012 0.87451 0.91787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.89 8.93 71.98 0.64 -4.24 16 2 C 0.12 4.47 1.64 44.17 0.07 4.54 16 3 H 0.04 1.42 6.02 -2.39 -0.01 1.41 16 4 C -0.07 -2.07 4.38 -19.84 -0.09 -2.15 16 5 C -0.10 -2.69 7.87 22.27 0.18 -2.51 16 6 C -0.12 -2.36 10.05 22.27 0.22 -2.13 16 7 C -0.11 -1.89 10.05 22.26 0.22 -1.67 16 8 C -0.12 -2.41 9.83 22.29 0.22 -2.20 16 9 C -0.05 -1.28 6.31 22.32 0.14 -1.14 16 10 Cl -0.08 -2.28 27.34 -2.72 -0.07 -2.35 16 11 N -0.50 -21.00 3.65 -854.77 -3.12 -24.12 16 12 C 0.20 10.40 4.09 85.56 0.35 10.75 16 13 C -0.49 -26.99 6.59 25.60 0.17 -26.82 16 14 H 0.06 3.35 7.63 -2.91 -0.02 3.32 16 15 C 0.00 0.15 5.46 84.66 0.46 0.61 16 16 N -0.94 -55.81 13.29 21.45 0.28 -55.52 16 17 Si 0.96 44.00 29.54 68.60 2.03 46.02 16 18 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 19 H -0.29 -13.14 7.11 99.48 0.71 -12.44 16 20 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 21 C 0.04 1.35 4.70 44.92 0.21 1.56 16 22 C -0.18 -7.32 8.75 30.62 0.27 -7.05 16 23 C -0.21 -7.61 9.36 30.62 0.29 -7.32 16 24 H 0.07 2.21 8.14 -2.39 -0.02 2.19 16 25 H 0.06 2.19 8.14 -2.38 -0.02 2.17 16 26 H 0.05 1.90 6.07 -2.38 -0.01 1.88 16 27 H 0.13 4.00 7.06 -2.91 -0.02 3.98 16 28 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 29 H 0.16 1.68 8.06 -2.91 -0.02 1.65 16 30 H 0.15 2.40 8.06 -2.91 -0.02 2.38 16 31 H -0.04 -2.01 6.19 -2.39 -0.01 -2.02 16 32 H 0.02 0.98 5.57 -2.38 -0.01 0.97 16 33 H 0.26 14.84 8.31 -92.71 -0.77 14.07 16 34 H 0.13 4.20 6.94 -2.39 -0.02 4.19 16 35 H 0.10 4.71 4.82 -2.38 -0.01 4.70 16 36 H 0.10 3.53 8.14 -2.39 -0.02 3.51 16 37 H 0.11 3.26 8.14 -2.39 -0.02 3.24 16 38 H 0.06 2.57 7.15 -2.39 -0.02 2.56 16 Total: -1.00 -61.77 315.67 3.53 -58.24 By element: Atomic # 1 Polarization: 16.46 SS G_CDS: 1.06 Total: 17.52 kcal Atomic # 6 Polarization: -43.14 SS G_CDS: 3.36 Total: -39.78 kcal Atomic # 7 Polarization: -76.81 SS G_CDS: -2.84 Total: -79.64 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Atomic # 17 Polarization: -2.28 SS G_CDS: -0.07 Total: -2.35 kcal Total: -61.77 3.53 -58.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101545006.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.229 kcal (2) G-P(sol) polarization free energy of solvation -61.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.531 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds