Wall clock time and date at job start Tue Mar 31 2020 01:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47251 * 2 1 4 4 C 1.50700 * 109.47344 * 239.99901 * 2 1 3 5 5 C 1.38236 * 119.98913 * 196.79738 * 4 2 1 6 6 C 1.38218 * 120.01290 * 179.72931 * 5 4 2 7 7 C 1.38348 * 119.98310 * 0.54263 * 6 5 4 8 8 Cl 1.73603 * 120.00766 * 179.74926 * 7 6 5 9 9 C 1.38347 * 119.97654 * 359.73688 * 7 6 5 10 10 C 1.38210 * 119.98606 * 359.97438 * 9 7 6 11 11 N 1.46896 * 109.46941 * 120.00076 * 2 1 3 12 12 C 1.46908 * 111.00133 * 291.75908 * 11 2 1 13 13 C 1.50696 * 109.47326 * 201.54728 * 12 11 2 14 14 H 1.08010 * 119.99843 * 5.81485 * 13 12 11 15 15 C 1.37878 * 120.00131 * 185.81609 * 13 12 11 16 16 N 1.31507 * 119.99951 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99992 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47290 * 89.99708 * 17 15 13 19 19 H 1.48504 * 109.46924 * 210.00013 * 17 15 13 20 20 H 1.48499 * 109.47324 * 329.99628 * 17 15 13 21 21 C 1.46896 * 111.00083 * 55.71299 * 11 2 1 22 22 C 1.52999 * 117.51904 * 101.36938 * 21 11 2 23 23 C 1.52998 * 60.00272 * 107.47635 * 22 21 11 24 24 H 1.09008 * 109.47017 * 60.00114 * 1 2 3 25 25 H 1.08993 * 109.47225 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47073 * 300.00028 * 1 2 3 27 27 H 1.08000 * 119.99044 * 0.02562 * 5 4 2 28 28 H 1.07999 * 120.00440 * 180.27825 * 6 5 4 29 29 H 1.08004 * 120.00636 * 179.97438 * 9 7 6 30 30 H 1.08002 * 119.99195 * 180.02562 * 10 9 7 31 31 H 1.09007 * 109.46682 * 321.54409 * 12 11 2 32 32 H 1.08997 * 109.46955 * 81.54444 * 12 11 2 33 33 H 0.97001 * 119.99999 * 180.02562 * 16 15 13 34 34 H 1.08995 * 115.55066 * 315.66364 * 21 11 2 35 35 H 1.09004 * 117.49873 * 214.97431 * 22 21 11 36 36 H 1.09002 * 117.49848 * 359.97438 * 22 21 11 37 37 H 1.08991 * 117.50094 * 252.50733 * 23 22 21 38 38 H 1.09004 * 117.49190 * 107.48653 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 6 3.3434 -1.1447 -1.2907 6 6 3.8031 -1.8013 -2.4167 7 6 2.9541 -2.0139 -3.4881 8 17 3.5327 -2.8327 -4.9053 9 6 1.6437 -1.5738 -3.4296 10 6 1.1835 -0.9227 -2.3007 11 7 2.0196 -0.6925 1.1994 12 6 1.7157 0.0777 2.4129 13 6 2.6455 -0.3439 3.5215 14 1 3.4478 -1.0380 3.3187 15 6 2.4719 0.1563 4.7945 16 7 1.4953 1.0018 5.0413 17 14 3.6248 -0.3657 6.1684 18 1 4.7790 0.5668 6.2273 19 1 2.8977 -0.3359 7.4629 20 1 4.1143 -1.7432 5.9073 21 6 1.4667 -2.0507 1.2857 22 6 2.3710 -3.2102 0.8632 23 6 2.0548 -2.9869 2.3434 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 4.0071 -0.9752 -0.4557 28 1 4.8261 -2.1445 -2.4618 29 1 0.9806 -1.7391 -4.2659 30 1 0.1605 -0.5795 -2.2547 31 1 1.8491 1.1407 2.2115 32 1 0.6846 -0.1088 2.7129 33 1 1.3734 1.3540 5.9368 34 1 0.4017 -2.1392 1.0715 35 1 1.9009 -4.0616 0.3709 36 1 3.3764 -2.9654 0.5206 37 1 2.8521 -2.5952 2.9748 38 1 1.3765 -3.6914 2.8249 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000103469365.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:18:26 Heat of formation + Delta-G solvation = 52.949087 kcal Electronic energy + Delta-G solvation = -19775.823347 eV Core-core repulsion = 16838.065641 eV Total energy + Delta-G solvation = -2937.757705 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.68858 -37.70863 -36.34802 -34.35931 -32.90383 -31.07363 -30.67363 -28.36766 -26.46382 -23.80332 -22.42307 -22.28023 -21.50108 -20.93659 -18.67942 -17.30387 -16.46747 -15.38309 -15.22408 -15.03774 -14.63329 -14.17573 -13.92893 -13.65026 -13.31539 -13.16797 -12.47605 -12.36849 -12.20426 -11.75751 -11.59568 -11.42409 -11.16716 -11.15285 -10.92142 -10.82490 -10.66430 -10.49894 -10.38679 -9.91278 -9.58514 -9.20087 -9.12686 -8.84521 -8.40920 -8.34172 -7.32807 -6.03146 -4.02904 1.31747 1.47709 2.19476 3.30745 3.37488 3.40036 3.80632 4.39432 4.62848 4.70450 4.97771 5.00422 5.03232 5.31968 5.45736 5.52991 5.58459 5.66933 5.73912 5.77292 5.82022 5.93939 6.11575 6.14688 6.24528 6.25650 6.31830 6.40357 6.52119 6.56760 6.72920 6.85078 7.00726 7.07905 7.18927 7.37420 7.82498 8.08820 8.16764 8.51115 9.02749 9.59734 11.07307 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.028718 B = 0.004381 C = 0.004129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.747420 B = 6390.023360 C = 6778.973381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.117 3.883 3 H 0.091 0.909 4 C -0.051 4.051 5 C -0.073 4.073 6 C -0.117 4.117 7 C -0.042 4.042 8 Cl -0.088 7.088 9 C -0.117 4.117 10 C -0.112 4.112 11 N -0.499 5.499 12 C 0.196 3.804 13 C -0.497 4.497 14 H 0.067 0.933 15 C 0.055 3.945 16 N -0.900 5.900 17 Si 0.893 3.107 18 H -0.281 1.281 19 H -0.288 1.288 20 H -0.273 1.273 21 C 0.024 3.976 22 C -0.181 4.181 23 C -0.161 4.161 24 H 0.054 0.946 25 H 0.059 0.941 26 H 0.065 0.935 27 H 0.142 0.858 28 H 0.127 0.873 29 H 0.125 0.875 30 H 0.131 0.869 31 H 0.023 0.977 32 H 0.002 0.998 33 H 0.260 0.740 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.092 0.908 37 H 0.120 0.880 38 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.063 -5.263 -15.101 15.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.008 3.992 3 H 0.109 0.891 4 C -0.052 4.052 5 C -0.091 4.091 6 C -0.135 4.135 7 C -0.069 4.069 8 Cl -0.060 7.060 9 C -0.136 4.136 10 C -0.131 4.131 11 N -0.223 5.223 12 C 0.072 3.928 13 C -0.536 4.536 14 H 0.085 0.915 15 C -0.146 4.146 16 N -0.540 5.540 17 Si 0.721 3.279 18 H -0.208 1.208 19 H -0.214 1.214 20 H -0.198 1.198 21 C -0.085 4.085 22 C -0.219 4.219 23 C -0.198 4.198 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.159 0.841 28 H 0.145 0.855 29 H 0.143 0.857 30 H 0.148 0.852 31 H 0.041 0.959 32 H 0.020 0.980 33 H 0.070 0.930 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.110 0.890 37 H 0.138 0.862 38 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 0.545 -5.256 -15.089 15.987 hybrid contribution -0.387 -0.228 0.756 0.880 sum 0.158 -5.485 -14.332 15.347 Atomic orbital electron populations 1.22533 0.97700 1.02072 1.02088 1.20597 0.92418 0.97422 0.88773 0.89100 1.20087 0.93616 0.96651 0.94836 1.21105 0.95917 0.95454 0.96644 1.21053 0.99574 1.00344 0.92576 1.20865 0.94980 1.01698 0.89333 1.98342 1.89138 1.78162 1.40339 1.20909 0.93856 0.99839 0.99017 1.21134 1.00138 0.99143 0.92663 1.62132 1.56728 1.00731 1.02697 1.19722 0.95826 0.92282 0.85002 1.21183 1.13580 1.26291 0.92544 0.91524 1.24958 0.95579 0.95378 0.98672 1.69945 1.31074 1.31560 1.21388 0.86576 0.80780 0.79051 0.81476 1.20753 1.21429 1.19807 1.22093 0.94115 0.87405 1.04922 1.23018 1.01013 0.99112 0.98759 1.23176 1.04358 1.00668 0.91559 0.92706 0.92253 0.91592 0.84063 0.85485 0.85681 0.85174 0.95864 0.98021 0.93014 0.90888 0.90660 0.88986 0.86164 0.90465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.79 7.51 37.16 0.28 -2.51 16 2 C 0.12 1.93 2.68 -68.87 -0.18 1.74 16 3 H 0.09 1.55 7.86 -51.93 -0.41 1.14 16 4 C -0.05 -0.75 4.70 -104.62 -0.49 -1.24 16 5 C -0.07 -1.05 7.34 -39.59 -0.29 -1.34 16 6 C -0.12 -1.51 9.83 -39.55 -0.39 -1.90 16 7 C -0.04 -0.53 6.32 -39.50 -0.25 -0.78 16 8 Cl -0.09 -1.02 28.96 -51.86 -1.50 -2.52 16 9 C -0.12 -1.42 9.83 -39.55 -0.39 -1.81 16 10 C -0.11 -1.43 9.11 -39.59 -0.36 -1.80 16 11 N -0.50 -9.78 3.91 -221.53 -0.87 -10.64 16 12 C 0.20 4.74 3.99 -4.97 -0.02 4.72 16 13 C -0.50 -13.08 7.64 -34.44 -0.26 -13.34 16 14 H 0.07 1.74 5.99 -52.48 -0.31 1.42 16 15 C 0.06 1.50 5.46 -17.82 -0.10 1.40 16 16 N -0.90 -25.88 13.29 55.43 0.74 -25.14 16 17 Si 0.89 21.02 29.54 -169.99 -5.02 16.00 16 18 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 20 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 21 C 0.02 0.44 3.97 -67.71 -0.27 0.17 16 22 C -0.18 -2.99 9.45 -26.73 -0.25 -3.24 16 23 C -0.16 -3.02 9.52 -26.73 -0.25 -3.27 16 24 H 0.05 0.68 6.78 -51.92 -0.35 0.33 16 25 H 0.06 0.88 6.09 -51.93 -0.32 0.57 16 26 H 0.07 1.12 7.15 -51.93 -0.37 0.75 16 27 H 0.14 2.17 7.71 -52.49 -0.40 1.77 16 28 H 0.13 1.45 8.06 -52.49 -0.42 1.03 16 29 H 0.13 1.28 8.06 -52.48 -0.42 0.85 16 30 H 0.13 1.47 5.96 -52.49 -0.31 1.16 16 31 H 0.02 0.60 7.73 -51.92 -0.40 0.20 16 32 H 0.00 0.05 7.48 -51.93 -0.39 -0.34 16 33 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 34 H 0.07 1.34 5.98 -51.93 -0.31 1.03 16 35 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.09 1.52 6.90 -51.93 -0.36 1.17 16 37 H 0.12 2.56 5.29 -51.93 -0.27 2.29 16 38 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 LS Contribution 315.96 15.07 4.76 4.76 Total: -1.00 -27.26 315.96 -10.16 -37.42 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -5.04 Total: 3.31 kcal Atomic # 6 Polarization: -19.96 SS G_CDS: -3.23 Total: -23.20 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: -0.13 Total: -35.78 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -5.02 Total: 16.00 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -1.50 Total: -2.52 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -27.26 -10.16 -37.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103469365.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.369 kcal (2) G-P(sol) polarization free energy of solvation -27.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.420 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.949 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds