Wall clock time and date at job start Tue Mar 31 2020 01:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47251 * 2 1 4 4 C 1.50700 * 109.47344 * 239.99901 * 2 1 3 5 5 C 1.38236 * 119.98913 * 196.79738 * 4 2 1 6 6 C 1.38218 * 120.01290 * 179.72931 * 5 4 2 7 7 C 1.38348 * 119.98310 * 0.54263 * 6 5 4 8 8 Cl 1.73603 * 120.00766 * 179.74926 * 7 6 5 9 9 C 1.38347 * 119.97654 * 359.73688 * 7 6 5 10 10 C 1.38210 * 119.98606 * 359.97438 * 9 7 6 11 11 N 1.46896 * 109.46941 * 120.00076 * 2 1 3 12 12 C 1.46908 * 111.00133 * 291.75908 * 11 2 1 13 13 C 1.50696 * 109.47326 * 201.54728 * 12 11 2 14 14 H 1.08010 * 119.99843 * 5.81485 * 13 12 11 15 15 C 1.37878 * 120.00131 * 185.81609 * 13 12 11 16 16 N 1.31507 * 119.99951 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99992 * 180.02562 * 15 13 12 18 18 H 1.48500 * 109.47290 * 89.99708 * 17 15 13 19 19 H 1.48504 * 109.46924 * 210.00013 * 17 15 13 20 20 H 1.48499 * 109.47324 * 329.99628 * 17 15 13 21 21 C 1.46896 * 111.00083 * 55.71299 * 11 2 1 22 22 C 1.52999 * 117.51904 * 101.36938 * 21 11 2 23 23 C 1.52998 * 60.00272 * 107.47635 * 22 21 11 24 24 H 1.09008 * 109.47017 * 60.00114 * 1 2 3 25 25 H 1.08993 * 109.47225 * 179.97438 * 1 2 3 26 26 H 1.09003 * 109.47073 * 300.00028 * 1 2 3 27 27 H 1.08000 * 119.99044 * 0.02562 * 5 4 2 28 28 H 1.07999 * 120.00440 * 180.27825 * 6 5 4 29 29 H 1.08004 * 120.00636 * 179.97438 * 9 7 6 30 30 H 1.08002 * 119.99195 * 180.02562 * 10 9 7 31 31 H 1.09007 * 109.46682 * 321.54409 * 12 11 2 32 32 H 1.08997 * 109.46955 * 81.54444 * 12 11 2 33 33 H 0.97001 * 119.99999 * 180.02562 * 16 15 13 34 34 H 1.08995 * 115.55066 * 315.66364 * 21 11 2 35 35 H 1.09004 * 117.49873 * 214.97431 * 22 21 11 36 36 H 1.09002 * 117.49848 * 359.97438 * 22 21 11 37 37 H 1.08991 * 117.50094 * 252.50733 * 23 22 21 38 38 H 1.09004 * 117.49190 * 107.48653 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 6 3.3434 -1.1447 -1.2907 6 6 3.8031 -1.8013 -2.4167 7 6 2.9541 -2.0139 -3.4881 8 17 3.5327 -2.8327 -4.9053 9 6 1.6437 -1.5738 -3.4296 10 6 1.1835 -0.9227 -2.3007 11 7 2.0196 -0.6925 1.1994 12 6 1.7157 0.0777 2.4129 13 6 2.6455 -0.3439 3.5215 14 1 3.4478 -1.0380 3.3187 15 6 2.4719 0.1563 4.7945 16 7 1.4953 1.0018 5.0413 17 14 3.6248 -0.3657 6.1684 18 1 4.7790 0.5668 6.2273 19 1 2.8977 -0.3359 7.4629 20 1 4.1143 -1.7432 5.9073 21 6 1.4667 -2.0507 1.2857 22 6 2.3710 -3.2102 0.8632 23 6 2.0548 -2.9869 2.3434 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 4.0071 -0.9752 -0.4557 28 1 4.8261 -2.1445 -2.4618 29 1 0.9806 -1.7391 -4.2659 30 1 0.1605 -0.5795 -2.2547 31 1 1.8491 1.1407 2.2115 32 1 0.6846 -0.1088 2.7129 33 1 1.3734 1.3540 5.9368 34 1 0.4017 -2.1392 1.0715 35 1 1.9009 -4.0616 0.3709 36 1 3.3764 -2.9654 0.5206 37 1 2.8521 -2.5952 2.9748 38 1 1.3765 -3.6914 2.8249 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000103469365.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:18:26 Heat of formation + Delta-G solvation = 39.803228 kcal Electronic energy + Delta-G solvation = -19776.393394 eV Core-core repulsion = 16838.065641 eV Total energy + Delta-G solvation = -2938.327753 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.87617 -39.03028 -37.34179 -35.74495 -34.87220 -32.37261 -31.89028 -29.67942 -28.25071 -25.14190 -24.09598 -23.47367 -22.88865 -22.23587 -20.11746 -18.80803 -17.93457 -16.82405 -16.70240 -16.38396 -16.07907 -15.59758 -15.17272 -15.04322 -14.35867 -14.26624 -14.20632 -13.91687 -13.70463 -13.28573 -12.90989 -12.79922 -12.69751 -12.52155 -12.35942 -12.22407 -12.20028 -11.80485 -11.62853 -11.51358 -11.17060 -11.09481 -10.65894 -10.48288 -9.85120 -9.40471 -8.94740 -8.12572 -6.19120 0.27492 0.47024 1.23497 1.43005 1.43532 1.53829 2.43237 2.74927 3.13020 3.19640 3.29049 3.80173 3.96429 4.07196 4.18585 4.25145 4.33756 4.37190 4.51085 4.55170 4.62137 4.73324 4.81353 4.93528 4.95016 5.00028 5.14486 5.19710 5.22761 5.25337 5.36459 5.38721 5.48816 5.54269 5.76786 5.81019 5.95661 6.16250 6.47154 6.70140 6.95637 7.48190 8.97531 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.028718 B = 0.004381 C = 0.004129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 974.747420 B = 6390.023360 C = 6778.973381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.115 3.885 3 H 0.077 0.923 4 C -0.062 4.062 5 C -0.083 4.083 6 C -0.116 4.116 7 C -0.045 4.045 8 Cl -0.076 7.076 9 C -0.112 4.112 10 C -0.108 4.108 11 N -0.501 5.501 12 C 0.215 3.785 13 C -0.501 4.501 14 H 0.067 0.933 15 C 0.003 3.997 16 N -0.937 5.937 17 Si 0.957 3.043 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.263 1.263 21 C 0.011 3.989 22 C -0.146 4.146 23 C -0.178 4.178 24 H 0.085 0.915 25 H 0.063 0.937 26 H 0.037 0.963 27 H 0.124 0.876 28 H 0.140 0.860 29 H 0.149 0.851 30 H 0.148 0.852 31 H -0.003 1.003 32 H -0.028 1.028 33 H 0.260 0.740 34 H 0.077 0.923 35 H 0.100 0.900 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.327 -6.840 -17.006 18.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.006 3.994 3 H 0.094 0.906 4 C -0.063 4.063 5 C -0.102 4.102 6 C -0.135 4.135 7 C -0.071 4.071 8 Cl -0.047 7.047 9 C -0.131 4.131 10 C -0.126 4.126 11 N -0.224 5.224 12 C 0.089 3.911 13 C -0.539 4.539 14 H 0.085 0.915 15 C -0.194 4.194 16 N -0.579 5.579 17 Si 0.782 3.218 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.188 1.188 21 C -0.098 4.098 22 C -0.184 4.184 23 C -0.215 4.215 24 H 0.104 0.896 25 H 0.082 0.918 26 H 0.056 0.944 27 H 0.142 0.858 28 H 0.158 0.842 29 H 0.167 0.833 30 H 0.165 0.835 31 H 0.015 0.985 32 H -0.010 1.010 33 H 0.069 0.931 34 H 0.095 0.905 35 H 0.119 0.881 36 H 0.110 0.890 37 H 0.111 0.889 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 0.822 -6.848 -17.020 18.364 hybrid contribution -0.462 0.247 1.227 1.334 sum 0.361 -6.600 -15.792 17.120 Atomic orbital electron populations 1.22434 0.96463 1.02360 1.02202 1.20593 0.93451 0.96820 0.88503 0.90554 1.19869 0.94147 0.97754 0.94482 1.20973 0.95720 0.96545 0.96920 1.21137 1.00326 0.99858 0.92142 1.20998 0.95213 1.01388 0.89551 1.98351 1.89059 1.77837 1.39500 1.21170 0.93955 0.98688 0.99278 1.21268 1.00570 0.98699 0.92102 1.62007 1.57374 1.01129 1.01927 1.19309 0.93637 0.91367 0.86794 1.21498 1.13545 1.25628 0.93261 0.91465 1.25765 0.97042 0.95453 1.01183 1.70075 1.32924 1.32994 1.21876 0.85569 0.78766 0.79062 0.78366 1.20302 1.21347 1.18764 1.22167 0.94789 0.87064 1.05759 1.22991 1.00554 0.98236 0.96569 1.23108 1.04195 1.01563 0.92638 0.89619 0.91770 0.94387 0.85796 0.84236 0.83300 0.83486 0.98486 1.01046 0.93074 0.90511 0.88132 0.88969 0.88935 0.89311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.24 7.51 71.98 0.54 -4.70 16 2 C 0.11 3.82 2.68 44.17 0.12 3.93 16 3 H 0.08 2.71 7.86 -2.39 -0.02 2.69 16 4 C -0.06 -1.72 4.70 -19.86 -0.09 -1.81 16 5 C -0.08 -2.30 7.34 22.26 0.16 -2.13 16 6 C -0.12 -2.76 9.83 22.29 0.22 -2.54 16 7 C -0.04 -1.00 6.32 22.32 0.14 -0.86 16 8 Cl -0.08 -1.53 28.96 -2.72 -0.08 -1.61 16 9 C -0.11 -2.33 9.83 22.29 0.22 -2.11 16 10 C -0.11 -2.46 9.11 22.26 0.20 -2.25 16 11 N -0.50 -20.07 3.91 -854.78 -3.34 -23.41 16 12 C 0.21 10.87 3.99 85.55 0.34 11.22 16 13 C -0.50 -27.11 7.64 25.60 0.20 -26.92 16 14 H 0.07 3.58 5.99 -2.91 -0.02 3.56 16 15 C 0.00 0.16 5.46 84.66 0.46 0.62 16 16 N -0.94 -55.59 13.29 21.45 0.28 -55.30 16 17 Si 0.96 43.76 29.54 68.60 2.03 45.78 16 18 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 19 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 20 H -0.26 -11.52 7.11 99.48 0.71 -10.81 16 21 C 0.01 0.41 3.97 44.92 0.18 0.58 16 22 C -0.15 -4.55 9.45 30.59 0.29 -4.26 16 23 C -0.18 -6.62 9.52 30.60 0.29 -6.33 16 24 H 0.09 1.98 6.78 -2.38 -0.02 1.97 16 25 H 0.06 1.84 6.09 -2.39 -0.01 1.82 16 26 H 0.04 1.33 7.15 -2.39 -0.02 1.31 16 27 H 0.12 3.83 7.71 -2.91 -0.02 3.81 16 28 H 0.14 2.89 8.06 -2.91 -0.02 2.87 16 29 H 0.15 2.39 8.06 -2.91 -0.02 2.36 16 30 H 0.15 2.80 5.96 -2.91 -0.02 2.79 16 31 H 0.00 -0.16 7.73 -2.38 -0.02 -0.18 16 32 H -0.03 -1.58 7.48 -2.39 -0.02 -1.60 16 33 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 34 H 0.08 2.76 5.98 -2.39 -0.01 2.75 16 35 H 0.10 2.67 8.14 -2.38 -0.02 2.65 16 36 H 0.09 2.90 6.90 -2.39 -0.02 2.88 16 37 H 0.09 3.99 5.29 -2.39 -0.01 3.98 16 38 H 0.09 3.04 8.14 -2.38 -0.02 3.02 16 Total: -1.00 -59.58 315.96 3.22 -56.36 By element: Atomic # 1 Polarization: 14.68 SS G_CDS: 1.06 Total: 15.75 kcal Atomic # 6 Polarization: -40.83 SS G_CDS: 3.27 Total: -37.57 kcal Atomic # 7 Polarization: -75.66 SS G_CDS: -3.05 Total: -78.71 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.78 kcal Atomic # 17 Polarization: -1.53 SS G_CDS: -0.08 Total: -1.61 kcal Total: -59.58 3.22 -56.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000103469365.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.159 kcal (2) G-P(sol) polarization free energy of solvation -59.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds