Wall clock time and date at job start Tue Mar 31 2020 01:47:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.37101 * 119.99780 * 2 1 4 4 H 1.07998 * 119.99397 * 202.60907 * 3 2 1 5 5 C 1.38953 * 119.99844 * 22.60274 * 3 2 1 6 6 N 1.31409 * 120.00156 * 10.42432 * 5 3 2 7 7 Si 1.86798 * 119.99546 * 190.41997 * 5 3 2 8 8 H 1.48503 * 109.47218 * 60.00606 * 7 5 3 9 9 H 1.48503 * 109.47154 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47457 * 300.00493 * 7 5 3 11 11 C 1.34779 * 119.99979 * 179.97438 * 2 1 3 12 12 O 1.21285 * 119.99613 * 180.02562 * 11 2 1 13 13 C 1.50697 * 119.99935 * 0.02562 * 11 2 1 14 14 H 1.08999 * 109.47013 * 60.00215 * 13 11 2 15 15 C 1.53003 * 109.47259 * 299.99678 * 13 11 2 16 16 C 1.53001 * 109.47083 * 180.02562 * 15 13 11 17 17 C 1.52998 * 109.47288 * 59.99683 * 16 15 13 18 18 C 1.52993 * 109.47324 * 300.00253 * 17 16 15 19 19 H 1.08999 * 109.47479 * 299.99841 * 18 17 16 20 20 C 1.53007 * 109.47256 * 179.97438 * 18 17 16 21 21 F 1.39895 * 109.46960 * 59.99563 * 20 18 17 22 22 F 1.39897 * 109.47231 * 179.97438 * 20 18 17 23 23 F 1.39907 * 109.46792 * 300.00095 * 20 18 17 24 24 C 1.53001 * 109.47186 * 60.00054 * 18 17 16 25 25 H 1.08997 * 109.47240 * 273.37168 * 1 2 3 26 26 H 1.08999 * 109.47116 * 153.37463 * 1 2 3 27 27 H 1.08998 * 109.47264 * 33.37458 * 1 2 3 28 28 H 0.97003 * 119.99633 * 179.97438 * 6 5 3 29 29 H 1.08998 * 109.46925 * 300.00640 * 15 13 11 30 30 H 1.08999 * 109.46513 * 59.99937 * 15 13 11 31 31 H 1.09000 * 109.46804 * 180.02562 * 16 15 13 32 32 H 1.09007 * 109.46656 * 299.99959 * 16 15 13 33 33 H 1.09003 * 109.46406 * 60.00170 * 17 16 15 34 34 H 1.09000 * 109.47311 * 179.97438 * 17 16 15 35 35 H 1.09001 * 109.47370 * 180.02562 * 24 18 17 36 36 H 1.08998 * 109.47747 * 59.99901 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.1682 1.2232 -0.3596 5 6 1.5357 2.3445 0.4625 6 7 0.3815 2.2709 1.0864 7 14 2.3501 4.0046 0.1975 8 1 2.5200 4.2459 -1.2579 9 1 1.4980 5.0725 0.7795 10 1 3.6793 4.0152 0.8595 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1671 0.0010 13 6 1.3854 -2.4723 0.0005 14 1 0.7592 -2.5302 -0.8897 15 6 0.5054 -2.5531 1.2495 16 6 -0.2592 -3.8784 1.2498 17 6 0.7355 -5.0410 1.2506 18 6 1.6155 -4.9602 0.0017 19 1 0.9892 -5.0185 -0.8885 20 6 2.6106 -6.1224 0.0028 21 9 1.9119 -7.3344 0.0034 22 9 3.4149 -6.0489 -1.1395 23 9 3.4144 -6.0470 1.1455 24 6 2.3801 -3.6349 0.0014 25 1 -0.3633 0.0604 1.0259 26 1 -0.3633 -0.9187 -0.4605 27 1 -0.3634 0.8582 -0.5653 28 1 -0.0475 3.0787 1.4096 29 1 1.1317 -2.4951 2.1396 30 1 -0.2029 -1.7246 1.2490 31 1 -0.8865 -3.9358 2.1393 32 1 -0.8855 -3.9367 0.3595 33 1 1.3617 -4.9826 2.1408 34 1 0.1908 -5.9852 1.2512 35 1 3.0067 -3.5771 -0.8885 36 1 3.0064 -3.5765 0.8916 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112011259.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:07 Heat of formation + Delta-G solvation = -202.634021 kcal Electronic energy + Delta-G solvation = -23064.313463 eV Core-core repulsion = 19132.906938 eV Total energy + Delta-G solvation = -3931.406525 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -50.04993 -47.54825 -47.49137 -39.50056 -37.22503 -34.73208 -32.24816 -31.19088 -30.64057 -26.46870 -25.44182 -24.87656 -22.78189 -21.89440 -20.18004 -18.95602 -18.19643 -18.09924 -17.38652 -16.85466 -15.86575 -15.13889 -14.62133 -14.52819 -14.41688 -14.32783 -13.97336 -13.93790 -13.73540 -13.68224 -13.58742 -13.34536 -12.83366 -12.32067 -12.24837 -11.86769 -11.65632 -11.39370 -11.25324 -11.15710 -11.03550 -10.81091 -10.55392 -10.42083 -10.29509 -10.14819 -9.95853 -9.00324 -8.32805 -7.68513 -6.31257 -3.88412 2.81775 3.18583 3.24045 3.28166 3.82131 3.86903 4.01588 4.09319 4.17013 4.70091 4.78286 4.97954 5.09213 5.10339 5.26328 5.35467 5.43158 5.46121 5.59960 5.68982 5.85743 6.01762 6.06859 6.14931 6.29005 6.34469 6.35323 6.55766 6.64238 6.86743 7.21809 7.56032 8.13051 8.48531 9.18918 9.42846 9.98528 10.72046 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.034940 B = 0.004521 C = 0.004185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.190039 B = 6191.315798 C = 6688.489933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.445 5.445 3 C -0.306 4.306 4 H 0.097 0.903 5 C 0.031 3.969 6 N -0.886 5.886 7 Si 0.927 3.073 8 H -0.274 1.274 9 H -0.284 1.284 10 H -0.273 1.273 11 C 0.450 3.550 12 O -0.589 6.589 13 C -0.091 4.091 14 H 0.082 0.918 15 C -0.127 4.127 16 C -0.111 4.111 17 C -0.118 4.118 18 C -0.131 4.131 19 H 0.112 0.888 20 C 0.453 3.547 21 F -0.189 7.189 22 F -0.184 7.184 23 F -0.182 7.182 24 C -0.093 4.093 25 H 0.062 0.938 26 H 0.029 0.971 27 H 0.065 0.935 28 H 0.267 0.733 29 H 0.066 0.934 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.065 0.935 33 H 0.076 0.924 34 H 0.071 0.929 35 H 0.079 0.921 36 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.327 -13.627 -0.813 14.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.164 5.164 3 C -0.434 4.434 4 H 0.115 0.885 5 C -0.172 4.172 6 N -0.525 5.525 7 Si 0.754 3.246 8 H -0.200 1.200 9 H -0.210 1.210 10 H -0.198 1.198 11 C 0.238 3.762 12 O -0.474 6.474 13 C -0.112 4.112 14 H 0.101 0.899 15 C -0.164 4.164 16 C -0.148 4.148 17 C -0.156 4.156 18 C -0.151 4.151 19 H 0.130 0.870 20 C 0.399 3.601 21 F -0.171 7.171 22 F -0.165 7.165 23 F -0.163 7.163 24 C -0.131 4.131 25 H 0.081 0.919 26 H 0.047 0.953 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.085 0.915 30 H 0.107 0.893 31 H 0.089 0.911 32 H 0.084 0.916 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.097 0.903 36 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -3.858 -13.477 -0.727 14.038 hybrid contribution 0.353 0.666 -0.095 0.760 sum -3.505 -12.812 -0.822 13.308 Atomic orbital electron populations 1.21640 0.81334 0.98468 1.01737 1.43547 1.05435 1.04723 1.62670 1.19617 0.99515 0.83977 1.40276 0.88503 1.25322 0.96459 1.00010 0.95417 1.69973 1.16848 1.29349 1.36358 0.85989 0.79048 0.80891 0.78712 1.19964 1.20961 1.19818 1.19918 0.87905 0.84643 0.83735 1.90517 1.14008 1.87090 1.55822 1.21042 0.96862 0.93892 0.99430 0.89945 1.21859 0.99132 0.97880 0.97562 1.21484 0.97158 0.93843 1.02349 1.21627 0.97873 0.99887 0.96167 1.22564 0.96111 0.93068 1.03353 0.87031 1.20709 0.81752 0.84180 0.73435 1.93147 1.78871 1.48779 1.96261 1.93176 1.75648 1.96385 1.51314 1.93170 1.75569 1.96367 1.51216 1.21335 0.97270 0.89647 1.04827 0.91925 0.95300 0.91642 0.92252 0.91488 0.89344 0.91142 0.91636 0.90578 0.91022 0.90255 0.90045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.39 7.04 59.85 0.42 2.81 16 2 N -0.45 -11.13 3.02 -122.19 -0.37 -11.50 16 3 C -0.31 -8.45 9.29 -14.93 -0.14 -8.59 16 4 H 0.10 2.82 7.40 -52.49 -0.39 2.43 16 5 C 0.03 0.80 5.14 -17.47 -0.09 0.71 16 6 N -0.89 -23.14 10.56 55.50 0.59 -22.56 16 7 Si 0.93 20.67 29.56 -169.99 -5.03 15.65 16 8 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 9 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 10 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 11 C 0.45 10.65 7.03 -10.99 -0.08 10.57 16 12 O -0.59 -16.15 15.67 5.55 0.09 -16.06 16 13 C -0.09 -1.56 1.72 -91.77 -0.16 -1.72 16 14 H 0.08 1.28 7.41 -51.93 -0.38 0.89 16 15 C -0.13 -1.91 4.81 -26.73 -0.13 -2.04 16 16 C -0.11 -1.24 5.92 -26.73 -0.16 -1.39 16 17 C -0.12 -1.29 4.96 -26.74 -0.13 -1.42 16 18 C -0.13 -1.60 2.17 -90.62 -0.20 -1.80 16 19 H 0.11 1.17 8.14 -51.93 -0.42 0.74 16 20 C 0.45 5.84 2.69 37.16 0.10 5.94 16 21 F -0.19 -2.31 16.80 2.25 0.04 -2.27 16 22 F -0.18 -2.57 16.80 2.25 0.04 -2.53 16 23 F -0.18 -2.55 16.28 2.25 0.04 -2.51 16 24 C -0.09 -1.47 3.53 -26.73 -0.09 -1.57 16 25 H 0.06 1.38 6.50 -51.93 -0.34 1.04 16 26 H 0.03 0.50 5.75 -51.93 -0.30 0.20 16 27 H 0.06 1.49 7.12 -51.93 -0.37 1.12 16 28 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 29 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.09 1.41 4.59 -51.93 -0.24 1.17 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 33 H 0.08 0.88 7.80 -51.93 -0.41 0.47 16 34 H 0.07 0.67 7.80 -51.93 -0.41 0.27 16 35 H 0.08 1.34 7.76 -51.93 -0.40 0.94 16 36 H 0.08 1.42 7.76 -51.93 -0.40 1.02 16 LS Contribution 295.08 15.07 4.45 4.45 Total: -1.00 -29.95 295.08 -5.27 -35.22 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -4.46 Total: 0.63 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: -0.65 Total: 1.49 kcal Atomic # 7 Polarization: -34.27 SS G_CDS: 0.22 Total: -34.06 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: 0.09 Total: -16.06 kcal Atomic # 9 Polarization: -7.43 SS G_CDS: 0.11 Total: -7.31 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.03 Total: 15.65 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.95 -5.27 -35.22 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112011259.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.413 kcal (2) G-P(sol) polarization free energy of solvation -29.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds