Wall clock time and date at job start Tue Mar 31 2020 01:47:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.37101 * 119.99780 * 2 1 4 4 H 1.07998 * 119.99397 * 202.60907 * 3 2 1 5 5 C 1.38953 * 119.99844 * 22.60274 * 3 2 1 6 6 N 1.31409 * 120.00156 * 10.42432 * 5 3 2 7 7 Si 1.86798 * 119.99546 * 190.41997 * 5 3 2 8 8 H 1.48503 * 109.47218 * 60.00606 * 7 5 3 9 9 H 1.48503 * 109.47154 * 179.97438 * 7 5 3 10 10 H 1.48498 * 109.47457 * 300.00493 * 7 5 3 11 11 C 1.34779 * 119.99979 * 179.97438 * 2 1 3 12 12 O 1.21285 * 119.99613 * 180.02562 * 11 2 1 13 13 C 1.50697 * 119.99935 * 0.02562 * 11 2 1 14 14 H 1.08999 * 109.47013 * 60.00215 * 13 11 2 15 15 C 1.53003 * 109.47259 * 299.99678 * 13 11 2 16 16 C 1.53001 * 109.47083 * 180.02562 * 15 13 11 17 17 C 1.52998 * 109.47288 * 59.99683 * 16 15 13 18 18 C 1.52993 * 109.47324 * 300.00253 * 17 16 15 19 19 H 1.08999 * 109.47479 * 299.99841 * 18 17 16 20 20 C 1.53007 * 109.47256 * 179.97438 * 18 17 16 21 21 F 1.39895 * 109.46960 * 59.99563 * 20 18 17 22 22 F 1.39897 * 109.47231 * 179.97438 * 20 18 17 23 23 F 1.39907 * 109.46792 * 300.00095 * 20 18 17 24 24 C 1.53001 * 109.47186 * 60.00054 * 18 17 16 25 25 H 1.08997 * 109.47240 * 273.37168 * 1 2 3 26 26 H 1.08999 * 109.47116 * 153.37463 * 1 2 3 27 27 H 1.08998 * 109.47264 * 33.37458 * 1 2 3 28 28 H 0.97003 * 119.99633 * 179.97438 * 6 5 3 29 29 H 1.08998 * 109.46925 * 300.00640 * 15 13 11 30 30 H 1.08999 * 109.46513 * 59.99937 * 15 13 11 31 31 H 1.09000 * 109.46804 * 180.02562 * 16 15 13 32 32 H 1.09007 * 109.46656 * 299.99959 * 16 15 13 33 33 H 1.09003 * 109.46406 * 60.00170 * 17 16 15 34 34 H 1.09000 * 109.47311 * 179.97438 * 17 16 15 35 35 H 1.09001 * 109.47370 * 180.02562 * 24 18 17 36 36 H 1.08998 * 109.47747 * 59.99901 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1874 0.0000 4 1 3.1682 1.2232 -0.3596 5 6 1.5357 2.3445 0.4625 6 7 0.3815 2.2709 1.0864 7 14 2.3501 4.0046 0.1975 8 1 2.5200 4.2459 -1.2579 9 1 1.4980 5.0725 0.7795 10 1 3.6793 4.0152 0.8595 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1671 0.0010 13 6 1.3854 -2.4723 0.0005 14 1 0.7592 -2.5302 -0.8897 15 6 0.5054 -2.5531 1.2495 16 6 -0.2592 -3.8784 1.2498 17 6 0.7355 -5.0410 1.2506 18 6 1.6155 -4.9602 0.0017 19 1 0.9892 -5.0185 -0.8885 20 6 2.6106 -6.1224 0.0028 21 9 1.9119 -7.3344 0.0034 22 9 3.4149 -6.0489 -1.1395 23 9 3.4144 -6.0470 1.1455 24 6 2.3801 -3.6349 0.0014 25 1 -0.3633 0.0604 1.0259 26 1 -0.3633 -0.9187 -0.4605 27 1 -0.3634 0.8582 -0.5653 28 1 -0.0475 3.0787 1.4096 29 1 1.1317 -2.4951 2.1396 30 1 -0.2029 -1.7246 1.2490 31 1 -0.8865 -3.9358 2.1393 32 1 -0.8855 -3.9367 0.3595 33 1 1.3617 -4.9826 2.1408 34 1 0.1908 -5.9852 1.2512 35 1 3.0067 -3.5771 -0.8885 36 1 3.0064 -3.5765 0.8916 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112011259.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:05 Heat of formation + Delta-G solvation = -220.022078 kcal Electronic energy + Delta-G solvation = -23065.067466 eV Core-core repulsion = 19132.906938 eV Total energy + Delta-G solvation = -3932.160528 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -51.08572 -48.57051 -48.55212 -41.06555 -38.65870 -36.69233 -33.92250 -32.63120 -31.88292 -28.26879 -26.68333 -26.57059 -24.20501 -22.97607 -21.32617 -20.49179 -19.24595 -19.18905 -18.94463 -18.53762 -17.56754 -16.42121 -16.25910 -16.07804 -15.79250 -15.51377 -15.36764 -15.01601 -14.86650 -14.73874 -14.69899 -14.58998 -14.41190 -13.80777 -13.50495 -13.35926 -13.19122 -13.01654 -12.83026 -12.57603 -12.44810 -12.30899 -12.14999 -12.03712 -11.61159 -11.41525 -11.20583 -10.93174 -10.21100 -9.66610 -8.31406 -5.97352 1.38603 1.40488 1.50454 1.79742 2.04506 2.28148 2.78787 2.92687 3.08468 3.11044 3.24229 3.72955 3.76403 3.91861 4.13623 4.22364 4.28982 4.37202 4.39045 4.44014 4.62710 4.76830 5.01439 5.02478 5.06824 5.11378 5.17063 5.25592 5.31882 5.44934 5.47359 5.51729 6.11251 6.50594 7.18710 7.50403 8.06115 8.69203 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.034940 B = 0.004521 C = 0.004185 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.190039 B = 6191.315798 C = 6688.489933 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.461 5.461 3 C -0.347 4.347 4 H 0.067 0.933 5 C 0.000 4.000 6 N -0.895 5.895 7 Si 0.986 3.014 8 H -0.269 1.269 9 H -0.268 1.268 10 H -0.280 1.280 11 C 0.437 3.563 12 O -0.639 6.639 13 C -0.080 4.080 14 H 0.112 0.888 15 C -0.123 4.123 16 C -0.100 4.100 17 C -0.117 4.117 18 C -0.121 4.121 19 H 0.141 0.859 20 C 0.454 3.546 21 F -0.180 7.180 22 F -0.192 7.192 23 F -0.192 7.192 24 C -0.088 4.088 25 H 0.054 0.946 26 H 0.073 0.927 27 H 0.046 0.954 28 H 0.273 0.727 29 H 0.043 0.957 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.090 0.910 33 H 0.065 0.935 34 H 0.100 0.900 35 H 0.062 0.938 36 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.544 -14.728 -1.042 16.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.179 5.179 3 C -0.475 4.475 4 H 0.085 0.915 5 C -0.202 4.202 6 N -0.533 5.533 7 Si 0.810 3.190 8 H -0.194 1.194 9 H -0.193 1.193 10 H -0.205 1.205 11 C 0.227 3.773 12 O -0.527 6.527 13 C -0.101 4.101 14 H 0.129 0.871 15 C -0.161 4.161 16 C -0.137 4.137 17 C -0.154 4.154 18 C -0.140 4.140 19 H 0.159 0.841 20 C 0.400 3.600 21 F -0.162 7.162 22 F -0.174 7.174 23 F -0.174 7.174 24 C -0.126 4.126 25 H 0.072 0.928 26 H 0.091 0.909 27 H 0.065 0.935 28 H 0.083 0.917 29 H 0.062 0.938 30 H 0.100 0.900 31 H 0.108 0.892 32 H 0.109 0.891 33 H 0.084 0.916 34 H 0.118 0.882 35 H 0.081 0.919 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.117 -14.588 -0.951 15.848 hybrid contribution 1.088 1.000 -0.001 1.478 sum -5.029 -13.588 -0.951 14.520 Atomic orbital electron populations 1.21612 0.79201 0.99869 1.01333 1.43821 1.06861 1.04506 1.62731 1.19558 0.99208 0.86163 1.42554 0.91513 1.26010 0.96996 1.02575 0.94573 1.70038 1.17177 1.30403 1.35715 0.85110 0.77928 0.77158 0.78815 1.19354 1.19254 1.20534 1.21123 0.87830 0.86474 0.81887 1.90473 1.16532 1.88147 1.57590 1.21031 0.96990 0.90274 1.01832 0.87062 1.21826 0.98481 1.00524 0.95232 1.21456 0.96867 0.90806 1.04617 1.21673 0.97634 1.01243 0.94847 1.22538 0.95738 0.90159 1.05600 0.84090 1.20807 0.81631 0.84736 0.72847 1.93163 1.78548 1.48289 1.96189 1.93164 1.76019 1.96457 1.51748 1.93156 1.75987 1.96445 1.51776 1.21191 0.97017 0.91577 1.02822 0.92771 0.90875 0.93501 0.91702 0.93784 0.89993 0.89169 0.89096 0.91641 0.88172 0.91949 0.92633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.15 7.04 127.77 0.90 6.05 16 2 N -0.46 -23.53 3.02 -658.89 -1.99 -25.51 16 3 C -0.35 -19.84 9.29 84.04 0.78 -19.06 16 4 H 0.07 4.12 7.40 -2.91 -0.02 4.10 16 5 C 0.00 0.02 5.14 84.93 0.44 0.45 16 6 N -0.89 -46.64 10.56 21.66 0.23 -46.41 16 7 Si 0.99 42.63 29.56 68.60 2.03 44.66 16 8 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 9 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 10 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 11 C 0.44 21.19 7.03 87.66 0.62 21.80 16 12 O -0.64 -36.84 15.67 -3.05 -0.05 -36.88 16 13 C -0.08 -2.67 1.72 -11.54 -0.02 -2.69 16 14 H 0.11 3.09 7.41 -2.39 -0.02 3.07 16 15 C -0.12 -3.49 4.81 30.60 0.15 -3.34 16 16 C -0.10 -1.81 5.92 30.59 0.18 -1.63 16 17 C -0.12 -2.13 4.96 30.59 0.15 -1.98 16 18 C -0.12 -2.62 2.17 -10.79 -0.02 -2.64 16 19 H 0.14 2.29 8.14 -2.39 -0.02 2.27 16 20 C 0.45 10.84 2.69 71.98 0.19 11.03 16 21 F -0.18 -3.88 16.80 44.97 0.76 -3.12 16 22 F -0.19 -5.16 16.80 44.97 0.76 -4.40 16 23 F -0.19 -5.26 16.28 44.97 0.73 -4.52 16 24 C -0.09 -2.75 3.53 30.60 0.11 -2.64 16 25 H 0.05 2.35 6.50 -2.39 -0.02 2.34 16 26 H 0.07 2.36 5.75 -2.39 -0.01 2.35 16 27 H 0.05 2.11 7.12 -2.39 -0.02 2.10 16 28 H 0.27 13.38 8.31 -92.71 -0.77 12.61 16 29 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.08 2.44 4.59 -2.39 -0.01 2.43 16 31 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 33 H 0.06 1.36 7.80 -2.39 -0.02 1.34 16 34 H 0.10 1.36 7.80 -2.39 -0.02 1.34 16 35 H 0.06 2.14 7.76 -2.39 -0.02 2.12 16 36 H 0.05 2.00 7.76 -2.39 -0.02 1.98 16 Total: -1.00 -68.16 295.08 7.04 -61.13 By element: Atomic # 1 Polarization: 8.61 SS G_CDS: 1.10 Total: 9.71 kcal Atomic # 6 Polarization: 1.89 SS G_CDS: 3.47 Total: 5.36 kcal Atomic # 7 Polarization: -70.17 SS G_CDS: -1.76 Total: -71.93 kcal Atomic # 8 Polarization: -36.84 SS G_CDS: -0.05 Total: -36.88 kcal Atomic # 9 Polarization: -14.29 SS G_CDS: 2.24 Total: -12.05 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -68.16 7.04 -61.13 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112011259.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.894 kcal (2) G-P(sol) polarization free energy of solvation -68.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -227.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds