Wall clock time and date at job start Tue Mar 31 2020 01:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37099 * 119.99870 * 2 1 4 4 H 1.08005 * 119.99991 * 149.92982 * 3 2 1 5 5 C 1.38946 * 119.99852 * 329.92605 * 3 2 1 6 6 N 1.31406 * 120.00282 * 350.93131 * 5 3 2 7 7 Si 1.86807 * 120.00094 * 170.93264 * 5 3 2 8 8 H 1.48497 * 109.47322 * 89.99925 * 7 5 3 9 9 H 1.48497 * 109.47394 * 210.00408 * 7 5 3 10 10 H 1.48506 * 109.46787 * 330.00009 * 7 5 3 11 11 C 1.34782 * 120.00320 * 179.97438 * 2 1 3 12 12 O 1.21289 * 120.00075 * 180.02562 * 11 2 1 13 13 C 1.50697 * 119.99471 * 0.02562 * 11 2 1 14 14 H 1.09004 * 109.47481 * 299.99150 * 13 11 2 15 15 C 1.52992 * 109.47689 * 59.99958 * 13 11 2 16 16 C 1.52994 * 109.47497 * 59.99459 * 15 13 11 17 17 C 1.53005 * 109.46960 * 60.00181 * 16 15 13 18 18 C 1.52999 * 109.47324 * 300.00149 * 17 16 15 19 19 H 1.08998 * 109.47037 * 299.99834 * 18 17 16 20 20 C 1.52999 * 109.47083 * 179.97438 * 18 17 16 21 21 F 1.39901 * 109.47150 * 300.00144 * 20 18 17 22 22 F 1.39897 * 109.47238 * 60.00474 * 20 18 17 23 23 F 1.39898 * 109.46663 * 180.02562 * 20 18 17 24 24 C 1.52998 * 109.46884 * 59.99621 * 18 17 16 25 25 H 1.08995 * 109.46763 * 85.13108 * 1 2 3 26 26 H 1.09003 * 109.46446 * 205.12808 * 1 2 3 27 27 H 1.08996 * 109.47016 * 325.12894 * 1 2 3 28 28 H 0.97001 * 120.00616 * 180.02562 * 6 5 3 29 29 H 1.09004 * 109.47557 * 180.02562 * 15 13 11 30 30 H 1.09004 * 109.47217 * 299.99809 * 15 13 11 31 31 H 1.09004 * 109.47332 * 300.00891 * 16 15 13 32 32 H 1.09002 * 109.47929 * 180.02562 * 16 15 13 33 33 H 1.09006 * 109.47190 * 180.02562 * 17 16 15 34 34 H 1.08998 * 109.46929 * 60.00050 * 17 16 15 35 35 H 1.08996 * 109.47178 * 179.97438 * 24 18 17 36 36 H 1.09006 * 109.46888 * 60.00514 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1215 1.2503 0.4687 5 6 1.5960 2.3096 -0.6030 6 7 0.5039 2.1957 -1.3249 7 14 2.4029 3.9805 -0.3875 8 1 3.3950 4.1947 -1.4715 9 1 1.3666 5.0423 -0.4481 10 1 3.0888 4.0329 0.9287 11 6 2.1390 -1.1672 0.0005 12 8 3.3519 -1.1672 0.0010 13 6 1.3855 -2.4723 0.0005 14 1 0.7585 -2.5299 0.8904 15 6 0.5063 -2.5537 -1.2489 16 6 1.3862 -2.4729 -2.4979 17 6 2.3805 -3.6358 -2.4973 18 6 3.2598 -3.5544 -1.2479 19 1 3.8048 -2.6105 -1.2479 20 6 4.2537 -4.7177 -1.2470 21 9 3.5537 -5.9290 -1.2467 22 9 5.0584 -4.6443 -2.3890 23 9 5.0572 -4.6436 -0.1042 24 6 2.3798 -3.6352 0.0011 25 1 -0.3633 0.0872 -1.0239 26 1 -0.3632 -0.9305 0.4364 27 1 -0.3633 0.8431 0.5875 28 1 0.1170 2.9791 -1.7462 29 1 -0.0391 -3.4975 -1.2487 30 1 -0.2021 -1.7252 -1.2494 31 1 1.9313 -1.5289 -2.4979 32 1 0.7599 -2.5304 -3.3881 33 1 3.0078 -3.5780 -3.3870 34 1 1.8356 -4.5797 -2.4973 35 1 3.0062 -3.5777 0.8912 36 1 1.8348 -4.5792 0.0011 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112011262.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:09 Heat of formation + Delta-G solvation = -200.018611 kcal Electronic energy + Delta-G solvation = -23666.902124 eV Core-core repulsion = 19735.609011 eV Total energy + Delta-G solvation = -3931.293113 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -49.81097 -47.30437 -47.25943 -39.77124 -36.71445 -34.71051 -32.23376 -30.96247 -30.57315 -26.45325 -25.26150 -24.88486 -22.66394 -21.67741 -20.51260 -18.56494 -17.94345 -17.71313 -17.30696 -16.88838 -15.69724 -15.02848 -14.74375 -14.40545 -14.27667 -14.16543 -13.91149 -13.72944 -13.46224 -13.45377 -13.23374 -13.11121 -12.77947 -12.26454 -12.03306 -11.82134 -11.69557 -11.45718 -11.19367 -11.09097 -10.92621 -10.68593 -10.44231 -10.36752 -10.28933 -9.89283 -9.86223 -9.02788 -8.26488 -7.60854 -6.32139 -3.96124 3.10767 3.15484 3.23863 3.28620 3.84190 4.11080 4.14675 4.34776 4.43158 4.76002 5.02559 5.11681 5.14262 5.29524 5.48289 5.49072 5.65555 5.72010 5.77094 5.88165 5.93693 6.18732 6.19390 6.29095 6.39153 6.48668 6.51042 6.57329 6.75638 6.80809 7.17166 7.54477 8.16199 8.46750 9.17126 9.39606 9.96409 10.71112 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.027143 B = 0.005541 C = 0.005180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.315082 B = 5051.808229 C = 5404.418640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.443 5.443 3 C -0.308 4.308 4 H 0.094 0.906 5 C 0.035 3.965 6 N -0.882 5.882 7 Si 0.924 3.076 8 H -0.277 1.277 9 H -0.283 1.283 10 H -0.270 1.270 11 C 0.457 3.543 12 O -0.585 6.585 13 C -0.099 4.099 14 H 0.086 0.914 15 C -0.122 4.122 16 C -0.114 4.114 17 C -0.113 4.113 18 C -0.142 4.142 19 H 0.149 0.851 20 C 0.452 3.548 21 F -0.192 7.192 22 F -0.189 7.189 23 F -0.184 7.184 24 C -0.088 4.088 25 H 0.069 0.931 26 H 0.032 0.968 27 H 0.056 0.944 28 H 0.267 0.733 29 H 0.062 0.938 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.065 0.935 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.612 -10.791 -0.865 10.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.161 5.161 3 C -0.436 4.436 4 H 0.112 0.888 5 C -0.169 4.169 6 N -0.521 5.521 7 Si 0.750 3.250 8 H -0.203 1.203 9 H -0.209 1.209 10 H -0.195 1.195 11 C 0.245 3.755 12 O -0.471 6.471 13 C -0.121 4.121 14 H 0.105 0.895 15 C -0.159 4.159 16 C -0.152 4.152 17 C -0.150 4.150 18 C -0.161 4.161 19 H 0.166 0.834 20 C 0.398 3.602 21 F -0.173 7.173 22 F -0.171 7.171 23 F -0.166 7.166 24 C -0.125 4.125 25 H 0.087 0.913 26 H 0.050 0.950 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.104 0.896 31 H 0.095 0.905 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.148 -10.650 -0.962 10.755 hybrid contribution 0.356 0.695 0.032 0.781 sum -0.792 -9.955 -0.931 10.030 Atomic orbital electron populations 1.21680 0.81767 0.98224 1.02149 1.43471 1.05186 1.04664 1.62745 1.19553 1.03876 0.85533 1.34662 0.88823 1.25374 0.96528 1.00146 0.94810 1.69914 1.20826 1.30478 1.30901 0.85975 0.78703 0.81274 0.79007 1.20322 1.20907 1.19492 1.20008 0.87927 0.84720 0.82841 1.90421 1.14027 1.86816 1.55796 1.21160 0.97126 0.94263 0.99517 0.89544 1.21797 0.97989 1.02688 0.93461 1.21443 0.97246 0.98749 0.97741 1.21565 0.97724 0.99930 0.95796 1.22871 0.96553 0.97789 0.98887 0.83357 1.20906 0.81776 0.84480 0.73019 1.93116 1.78841 1.49123 1.96237 1.93136 1.75755 1.96480 1.51688 1.93160 1.75626 1.96430 1.51336 1.21247 0.96954 0.97750 0.96596 0.91307 0.94976 0.92530 0.92303 0.91966 0.89578 0.90538 0.91647 0.91312 0.91500 0.90563 0.91381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.20 7.09 59.85 0.42 2.63 16 2 N -0.44 -10.69 2.99 -122.19 -0.37 -11.06 16 3 C -0.31 -8.30 9.12 -14.93 -0.14 -8.44 16 4 H 0.09 2.65 7.55 -52.48 -0.40 2.26 16 5 C 0.03 0.90 5.18 -17.47 -0.09 0.81 16 6 N -0.88 -22.79 10.94 55.50 0.61 -22.19 16 7 Si 0.92 20.45 29.56 -169.99 -5.03 15.43 16 8 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 9 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 10 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 11 C 0.46 10.29 5.52 -10.98 -0.06 10.23 16 12 O -0.59 -14.94 13.43 5.55 0.07 -14.87 16 13 C -0.10 -1.69 2.20 -91.77 -0.20 -1.89 16 14 H 0.09 1.33 7.42 -51.93 -0.39 0.95 16 15 C -0.12 -1.85 5.05 -26.74 -0.14 -1.98 16 16 C -0.11 -1.81 5.70 -26.73 -0.15 -1.96 16 17 C -0.11 -1.64 4.96 -26.73 -0.13 -1.77 16 18 C -0.14 -2.34 1.87 -90.62 -0.17 -2.51 16 19 H 0.15 2.97 5.51 -51.93 -0.29 2.68 16 20 C 0.45 7.12 2.69 37.16 0.10 7.22 16 21 F -0.19 -2.81 16.28 2.25 0.04 -2.77 16 22 F -0.19 -3.01 16.80 2.25 0.04 -2.97 16 23 F -0.18 -3.10 16.79 2.25 0.04 -3.06 16 24 C -0.09 -1.39 4.13 -26.73 -0.11 -1.50 16 25 H 0.07 1.50 6.35 -51.93 -0.33 1.17 16 26 H 0.03 0.55 5.64 -51.93 -0.29 0.25 16 27 H 0.06 1.25 7.69 -51.93 -0.40 0.85 16 28 H 0.27 6.58 8.31 -40.82 -0.34 6.24 16 29 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.09 1.37 4.62 -51.93 -0.24 1.13 16 31 H 0.08 1.51 7.22 -51.93 -0.37 1.13 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 0.97 7.80 -51.93 -0.41 0.56 16 34 H 0.07 0.86 7.80 -51.93 -0.41 0.46 16 35 H 0.08 1.28 7.76 -51.93 -0.40 0.88 16 36 H 0.07 0.91 7.80 -51.93 -0.41 0.51 16 LS Contribution 289.38 15.07 4.36 4.36 Total: -1.00 -28.27 289.38 -5.20 -33.47 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -4.30 Total: 2.82 kcal Atomic # 6 Polarization: 1.49 SS G_CDS: -0.66 Total: 0.83 kcal Atomic # 7 Polarization: -33.49 SS G_CDS: 0.24 Total: -33.24 kcal Atomic # 8 Polarization: -14.94 SS G_CDS: 0.07 Total: -14.87 kcal Atomic # 9 Polarization: -8.92 SS G_CDS: 0.11 Total: -8.80 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.03 Total: 15.43 kcal Total LS contribution 4.36 Total: 4.36 kcal Total: -28.27 -5.20 -33.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112011262.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.544 kcal (2) G-P(sol) polarization free energy of solvation -28.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -194.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds