Wall clock time and date at job start Tue Mar 31 2020 01:47:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37099 * 119.99870 * 2 1 4 4 H 1.08005 * 119.99991 * 149.92982 * 3 2 1 5 5 C 1.38946 * 119.99852 * 329.92605 * 3 2 1 6 6 N 1.31406 * 120.00282 * 350.93131 * 5 3 2 7 7 Si 1.86807 * 120.00094 * 170.93264 * 5 3 2 8 8 H 1.48497 * 109.47322 * 89.99925 * 7 5 3 9 9 H 1.48497 * 109.47394 * 210.00408 * 7 5 3 10 10 H 1.48506 * 109.46787 * 330.00009 * 7 5 3 11 11 C 1.34782 * 120.00320 * 179.97438 * 2 1 3 12 12 O 1.21289 * 120.00075 * 180.02562 * 11 2 1 13 13 C 1.50697 * 119.99471 * 0.02562 * 11 2 1 14 14 H 1.09004 * 109.47481 * 299.99150 * 13 11 2 15 15 C 1.52992 * 109.47689 * 59.99958 * 13 11 2 16 16 C 1.52994 * 109.47497 * 59.99459 * 15 13 11 17 17 C 1.53005 * 109.46960 * 60.00181 * 16 15 13 18 18 C 1.52999 * 109.47324 * 300.00149 * 17 16 15 19 19 H 1.08998 * 109.47037 * 299.99834 * 18 17 16 20 20 C 1.52999 * 109.47083 * 179.97438 * 18 17 16 21 21 F 1.39901 * 109.47150 * 300.00144 * 20 18 17 22 22 F 1.39897 * 109.47238 * 60.00474 * 20 18 17 23 23 F 1.39898 * 109.46663 * 180.02562 * 20 18 17 24 24 C 1.52998 * 109.46884 * 59.99621 * 18 17 16 25 25 H 1.08995 * 109.46763 * 85.13108 * 1 2 3 26 26 H 1.09003 * 109.46446 * 205.12808 * 1 2 3 27 27 H 1.08996 * 109.47016 * 325.12894 * 1 2 3 28 28 H 0.97001 * 120.00616 * 180.02562 * 6 5 3 29 29 H 1.09004 * 109.47557 * 180.02562 * 15 13 11 30 30 H 1.09004 * 109.47217 * 299.99809 * 15 13 11 31 31 H 1.09004 * 109.47332 * 300.00891 * 16 15 13 32 32 H 1.09002 * 109.47929 * 180.02562 * 16 15 13 33 33 H 1.09006 * 109.47190 * 180.02562 * 17 16 15 34 34 H 1.08998 * 109.46929 * 60.00050 * 17 16 15 35 35 H 1.08996 * 109.47178 * 179.97438 * 24 18 17 36 36 H 1.09006 * 109.46888 * 60.00514 * 24 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1215 1.2503 0.4687 5 6 1.5960 2.3096 -0.6030 6 7 0.5039 2.1957 -1.3249 7 14 2.4029 3.9805 -0.3875 8 1 3.3950 4.1947 -1.4715 9 1 1.3666 5.0423 -0.4481 10 1 3.0888 4.0329 0.9287 11 6 2.1390 -1.1672 0.0005 12 8 3.3519 -1.1672 0.0010 13 6 1.3855 -2.4723 0.0005 14 1 0.7585 -2.5299 0.8904 15 6 0.5063 -2.5537 -1.2489 16 6 1.3862 -2.4729 -2.4979 17 6 2.3805 -3.6358 -2.4973 18 6 3.2598 -3.5544 -1.2479 19 1 3.8048 -2.6105 -1.2479 20 6 4.2537 -4.7177 -1.2470 21 9 3.5537 -5.9290 -1.2467 22 9 5.0584 -4.6443 -2.3890 23 9 5.0572 -4.6436 -0.1042 24 6 2.3798 -3.6352 0.0011 25 1 -0.3633 0.0872 -1.0239 26 1 -0.3632 -0.9305 0.4364 27 1 -0.3633 0.8431 0.5875 28 1 0.1170 2.9791 -1.7462 29 1 -0.0391 -3.4975 -1.2487 30 1 -0.2021 -1.7252 -1.2494 31 1 1.9313 -1.5289 -2.4979 32 1 0.7599 -2.5304 -3.3881 33 1 3.0078 -3.5780 -3.3870 34 1 1.8356 -4.5797 -2.4973 35 1 3.0062 -3.5777 0.8912 36 1 1.8348 -4.5792 0.0011 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112011262.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:09 Heat of formation + Delta-G solvation = -215.853234 kcal Electronic energy + Delta-G solvation = -23667.588765 eV Core-core repulsion = 19735.609011 eV Total energy + Delta-G solvation = -3931.979754 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -51.07672 -48.57068 -48.52400 -41.32403 -38.25782 -36.56748 -33.95365 -32.49967 -31.89085 -28.22786 -26.68272 -26.52277 -24.12294 -22.96475 -21.93885 -20.06249 -19.22012 -19.12319 -18.81138 -18.57890 -17.43183 -16.45596 -16.31014 -16.03712 -15.84621 -15.47598 -15.34801 -15.00229 -14.74757 -14.72623 -14.62565 -14.54027 -14.34258 -13.74284 -13.46262 -13.36817 -13.10101 -13.01624 -12.84646 -12.74369 -12.52076 -12.22547 -12.13582 -11.99268 -11.70371 -11.18672 -11.14176 -10.93296 -10.04338 -9.51673 -8.27995 -5.99535 1.36861 1.40290 1.51365 1.83030 2.10761 2.29778 2.85341 3.04566 3.10077 3.14961 3.21877 3.80376 3.81592 3.92897 4.21256 4.21714 4.37274 4.39411 4.48780 4.59258 4.68823 4.78851 4.96410 4.99798 5.04931 5.11330 5.22843 5.26322 5.33189 5.45721 5.48948 5.51862 6.18611 6.55647 7.23446 7.55157 8.12231 8.72757 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.027143 B = 0.005541 C = 0.005180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1031.315082 B = 5051.808229 C = 5404.418640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.117 3.883 2 N -0.462 5.462 3 C -0.341 4.341 4 H 0.064 0.936 5 C 0.002 3.998 6 N -0.894 5.894 7 Si 0.980 3.020 8 H -0.280 1.280 9 H -0.268 1.268 10 H -0.272 1.272 11 C 0.450 3.550 12 O -0.624 6.624 13 C -0.093 4.093 14 H 0.113 0.887 15 C -0.118 4.118 16 C -0.113 4.113 17 C -0.106 4.106 18 C -0.143 4.143 19 H 0.106 0.894 20 C 0.458 3.542 21 F -0.178 7.178 22 F -0.191 7.191 23 F -0.193 7.193 24 C -0.085 4.085 25 H 0.058 0.942 26 H 0.074 0.926 27 H 0.037 0.963 28 H 0.271 0.729 29 H 0.107 0.893 30 H 0.078 0.922 31 H 0.024 0.976 32 H 0.087 0.913 33 H 0.069 0.931 34 H 0.099 0.901 35 H 0.060 0.940 36 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.284 -12.501 -1.096 12.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.026 4.026 2 N -0.180 5.180 3 C -0.470 4.470 4 H 0.082 0.918 5 C -0.200 4.200 6 N -0.533 5.533 7 Si 0.804 3.196 8 H -0.206 1.206 9 H -0.193 1.193 10 H -0.197 1.197 11 C 0.241 3.759 12 O -0.512 6.512 13 C -0.114 4.114 14 H 0.130 0.870 15 C -0.155 4.155 16 C -0.150 4.150 17 C -0.144 4.144 18 C -0.162 4.162 19 H 0.124 0.876 20 C 0.405 3.595 21 F -0.160 7.160 22 F -0.173 7.173 23 F -0.174 7.174 24 C -0.123 4.123 25 H 0.076 0.924 26 H 0.093 0.907 27 H 0.056 0.944 28 H 0.081 0.919 29 H 0.126 0.874 30 H 0.096 0.904 31 H 0.043 0.957 32 H 0.106 0.894 33 H 0.087 0.913 34 H 0.117 0.883 35 H 0.079 0.921 36 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -2.843 -12.369 -1.194 12.747 hybrid contribution 0.932 1.185 0.083 1.510 sum -1.911 -11.184 -1.111 11.400 Atomic orbital electron populations 1.21629 0.79892 0.99611 1.01488 1.43708 1.06430 1.04461 1.63422 1.19470 1.03723 0.87727 1.36065 0.91775 1.26008 0.97057 1.02669 0.94263 1.69979 1.21198 1.31340 1.30780 0.85138 0.78068 0.77858 0.78503 1.20610 1.19269 1.19685 1.21077 0.87872 0.86256 0.80733 1.90407 1.16193 1.87760 1.56830 1.21214 0.97382 0.90967 1.01813 0.86957 1.21827 0.97311 1.04740 0.91614 1.21411 0.97504 0.96720 0.99402 1.21565 0.97337 1.00738 0.94714 1.22737 0.96802 0.96120 1.00533 0.87576 1.20726 0.81484 0.84665 0.72670 1.93137 1.78463 1.48235 1.96166 1.93133 1.75864 1.96525 1.51766 1.93146 1.75924 1.96504 1.51864 1.21291 0.96670 0.98850 0.95481 0.92398 0.90725 0.94391 0.91927 0.87422 0.90371 0.95692 0.89441 0.91257 0.88286 0.92107 0.87479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 4.82 7.09 127.77 0.91 5.72 16 2 N -0.46 -22.79 2.99 -658.89 -1.97 -24.76 16 3 C -0.34 -19.13 9.12 84.04 0.77 -18.37 16 4 H 0.06 3.87 7.55 -2.91 -0.02 3.85 16 5 C 0.00 0.11 5.18 84.93 0.44 0.55 16 6 N -0.89 -46.63 10.94 21.66 0.24 -46.40 16 7 Si 0.98 42.64 29.56 68.60 2.03 44.66 16 8 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 9 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 10 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 11 C 0.45 20.61 5.52 87.66 0.48 21.09 16 12 O -0.62 -33.36 13.43 -3.06 -0.04 -33.41 16 13 C -0.09 -2.95 2.20 -11.54 -0.03 -2.97 16 14 H 0.11 3.04 7.42 -2.38 -0.02 3.02 16 15 C -0.12 -3.17 5.05 30.59 0.15 -3.02 16 16 C -0.11 -3.37 5.70 30.59 0.17 -3.20 16 17 C -0.11 -2.84 4.96 30.60 0.15 -2.69 16 18 C -0.14 -4.55 1.87 -10.79 -0.02 -4.57 16 19 H 0.11 4.41 5.51 -2.39 -0.01 4.40 16 20 C 0.46 13.76 2.69 71.98 0.19 13.96 16 21 F -0.18 -4.65 16.28 44.97 0.73 -3.92 16 22 F -0.19 -5.91 16.80 44.97 0.76 -5.16 16 23 F -0.19 -6.38 16.79 44.97 0.76 -5.63 16 24 C -0.09 -2.50 4.13 30.60 0.13 -2.37 16 25 H 0.06 2.50 6.35 -2.39 -0.02 2.49 16 26 H 0.07 2.38 5.64 -2.39 -0.01 2.36 16 27 H 0.04 1.67 7.69 -2.39 -0.02 1.65 16 28 H 0.27 13.33 8.31 -92.71 -0.77 12.56 16 29 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.08 2.27 4.62 -2.38 -0.01 2.26 16 31 H 0.02 0.99 7.22 -2.39 -0.02 0.97 16 32 H 0.09 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.07 1.84 7.80 -2.38 -0.02 1.82 16 34 H 0.10 2.06 7.80 -2.39 -0.02 2.04 16 35 H 0.06 1.97 7.76 -2.39 -0.02 1.95 16 36 H 0.11 2.34 7.80 -2.38 -0.02 2.32 16 Total: -1.00 -64.39 289.38 6.96 -57.44 By element: Atomic # 1 Polarization: 11.92 SS G_CDS: 1.11 Total: 13.03 kcal Atomic # 6 Polarization: 0.78 SS G_CDS: 3.35 Total: 4.13 kcal Atomic # 7 Polarization: -69.42 SS G_CDS: -1.73 Total: -71.15 kcal Atomic # 8 Polarization: -33.36 SS G_CDS: -0.04 Total: -33.41 kcal Atomic # 9 Polarization: -16.95 SS G_CDS: 2.24 Total: -14.71 kcal Atomic # 14 Polarization: 42.64 SS G_CDS: 2.03 Total: 44.66 kcal Total: -64.39 6.96 -57.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112011262.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.415 kcal (2) G-P(sol) polarization free energy of solvation -64.394 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -222.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds