Wall clock time and date at job start Tue Mar 31 2020 01:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37090 * 120.00320 * 2 1 4 4 H 1.08002 * 120.00359 * 157.41330 * 3 2 1 5 5 C 1.38958 * 120.00018 * 337.41045 * 3 2 1 6 6 N 1.31412 * 119.99441 * 348.71817 * 5 3 2 7 7 Si 1.86797 * 120.00129 * 168.71585 * 5 3 2 8 8 H 1.48497 * 109.46897 * 180.02562 * 7 5 3 9 9 H 1.48495 * 109.47313 * 300.00395 * 7 5 3 10 10 H 1.48504 * 109.46984 * 60.00357 * 7 5 3 11 11 C 1.34777 * 119.99876 * 179.97438 * 2 1 3 12 12 O 1.21291 * 120.00122 * 179.97438 * 11 2 1 13 13 C 1.50703 * 120.00141 * 0.02562 * 11 2 1 14 14 H 1.09000 * 109.46737 * 299.99423 * 13 11 2 15 15 C 1.53003 * 109.47314 * 59.99219 * 13 11 2 16 16 C 1.52999 * 109.47188 * 180.02562 * 15 13 11 17 17 C 1.52991 * 109.47323 * 300.00483 * 16 15 13 18 18 C 1.52997 * 109.47405 * 59.99954 * 17 16 15 19 19 H 1.09000 * 109.47300 * 59.99947 * 18 17 16 20 20 C 1.52999 * 109.47030 * 180.02562 * 18 17 16 21 21 F 1.39901 * 109.47635 * 60.00136 * 20 18 17 22 22 F 1.39909 * 109.47032 * 180.02562 * 20 18 17 23 23 F 1.39900 * 109.47214 * 299.99392 * 20 18 17 24 24 C 1.53001 * 109.47357 * 179.97438 * 13 11 2 25 25 H 1.08999 * 109.46942 * 86.85807 * 1 2 3 26 26 H 1.08999 * 109.47151 * 206.85557 * 1 2 3 27 27 H 1.09002 * 109.46766 * 326.85753 * 1 2 3 28 28 H 0.97002 * 119.99318 * 179.97438 * 6 5 3 29 29 H 1.08994 * 109.47120 * 300.00257 * 15 13 11 30 30 H 1.09004 * 109.46639 * 60.00145 * 15 13 11 31 31 H 1.09000 * 109.46852 * 60.00211 * 16 15 13 32 32 H 1.09000 * 109.47129 * 179.97438 * 16 15 13 33 33 H 1.09000 * 109.47226 * 179.97438 * 17 16 15 34 34 H 1.09000 * 109.46935 * 299.99677 * 17 16 15 35 35 H 1.09000 * 109.46972 * 299.99581 * 24 13 11 36 36 H 1.08998 * 109.46847 * 59.99535 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.1684 1.2231 0.3592 5 6 1.5358 2.3445 -0.4623 6 7 0.3896 2.2694 -1.1007 7 14 2.3385 4.0067 -0.1760 8 1 1.4882 5.0743 -0.7613 9 1 2.4895 4.2389 1.2829 10 1 3.6756 4.0284 -0.8217 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1673 0.0001 13 6 1.3854 -2.4723 0.0005 14 1 0.7585 -2.5299 0.8903 15 6 0.5060 -2.5536 -1.2490 16 6 -0.2594 -3.8784 -1.2486 17 6 0.7343 -5.0416 -1.2477 18 6 1.6136 -4.9604 0.0018 19 1 0.9866 -5.0175 0.8916 20 6 2.6077 -6.1233 0.0023 21 9 3.4125 -6.0496 -1.1398 22 9 3.4114 -6.0494 1.1451 23 9 1.9082 -7.3349 0.0024 24 6 2.3796 -3.6353 0.0005 25 1 -0.3633 0.0563 -1.0261 26 1 -0.3633 -0.9168 0.4642 27 1 -0.3633 0.8605 0.5619 28 1 -0.0397 3.0773 -1.4231 29 1 -0.2022 -1.7252 -1.2493 30 1 1.1330 -2.4961 -2.1388 31 1 -0.8864 -3.9355 -0.3588 32 1 -0.8862 -3.9361 -2.1385 33 1 0.1890 -5.9854 -1.2470 34 1 1.3613 -4.9845 -2.1375 35 1 3.0062 -3.5776 -0.8895 36 1 3.0062 -3.5775 0.8905 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112011267.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:15 Heat of formation + Delta-G solvation = -202.761915 kcal Electronic energy + Delta-G solvation = -23063.521732 eV Core-core repulsion = 19132.109661 eV Total energy + Delta-G solvation = -3931.412071 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.04911 -47.54716 -47.49103 -39.49925 -37.22456 -34.73097 -32.24770 -31.19182 -30.64097 -26.46816 -25.44190 -24.88028 -22.78128 -21.89452 -20.18102 -18.95555 -18.19599 -18.09946 -17.38503 -16.85471 -15.86442 -15.13852 -14.62099 -14.53136 -14.41794 -14.32733 -13.97430 -13.93814 -13.73539 -13.68196 -13.58743 -13.34620 -12.83441 -12.32156 -12.24780 -11.86752 -11.65243 -11.39173 -11.26309 -11.16137 -11.03741 -10.81213 -10.55441 -10.42208 -10.29476 -10.14746 -9.95831 -9.00460 -8.32735 -7.68346 -6.31595 -3.88279 2.81779 3.18536 3.24066 3.28185 3.82179 3.86809 4.01481 4.09319 4.17039 4.70120 4.78240 4.97930 5.09097 5.10119 5.26363 5.35353 5.43088 5.46117 5.59958 5.68935 5.85674 6.01707 6.06844 6.14797 6.29021 6.34411 6.35085 6.55707 6.64178 6.85910 7.20915 7.56139 8.13001 8.48469 9.18893 9.42801 9.98560 10.71926 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.034976 B = 0.004520 C = 0.004184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.347069 B = 6193.454511 C = 6690.200012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.445 5.445 3 C -0.306 4.306 4 H 0.097 0.903 5 C 0.031 3.969 6 N -0.885 5.885 7 Si 0.926 3.074 8 H -0.284 1.284 9 H -0.274 1.274 10 H -0.273 1.273 11 C 0.450 3.550 12 O -0.589 6.589 13 C -0.091 4.091 14 H 0.082 0.918 15 C -0.127 4.127 16 C -0.111 4.111 17 C -0.118 4.118 18 C -0.132 4.132 19 H 0.112 0.888 20 C 0.453 3.547 21 F -0.182 7.182 22 F -0.184 7.184 23 F -0.189 7.189 24 C -0.093 4.093 25 H 0.062 0.938 26 H 0.029 0.971 27 H 0.065 0.935 28 H 0.267 0.733 29 H 0.088 0.912 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.355 -13.626 0.853 14.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.163 5.163 3 C -0.434 4.434 4 H 0.115 0.885 5 C -0.172 4.172 6 N -0.525 5.525 7 Si 0.753 3.247 8 H -0.210 1.210 9 H -0.200 1.200 10 H -0.198 1.198 11 C 0.238 3.762 12 O -0.474 6.474 13 C -0.112 4.112 14 H 0.101 0.899 15 C -0.164 4.164 16 C -0.148 4.148 17 C -0.156 4.156 18 C -0.151 4.151 19 H 0.130 0.870 20 C 0.399 3.601 21 F -0.163 7.163 22 F -0.165 7.165 23 F -0.171 7.171 24 C -0.131 4.131 25 H 0.081 0.919 26 H 0.047 0.953 27 H 0.083 0.917 28 H 0.077 0.923 29 H 0.106 0.894 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.089 0.911 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -3.886 -13.477 0.764 14.047 hybrid contribution 0.347 0.667 0.104 0.759 sum -3.539 -12.809 0.869 13.318 Atomic orbital electron populations 1.21636 0.81356 0.98512 1.01706 1.43539 1.05419 1.04726 1.62665 1.19615 0.99537 0.83959 1.40315 0.88499 1.25320 0.96499 1.00007 0.95378 1.69976 1.17315 1.29355 1.35810 0.85993 0.79040 0.80917 0.78721 1.20963 1.19966 1.19817 1.19919 0.87907 0.84641 0.83736 1.90519 1.14005 1.87091 1.55819 1.21044 0.96868 0.93891 0.99425 0.89948 1.21858 0.99129 0.97884 0.97560 1.21482 0.97160 0.93840 1.02351 1.21629 0.97882 0.99883 0.96161 1.22576 0.96125 0.93052 1.03353 0.87024 1.20711 0.81738 0.84195 0.73436 1.93169 1.75511 1.96378 1.51259 1.93179 1.75687 1.96385 1.51277 1.93148 1.78830 1.48820 1.96262 1.21343 0.97257 0.89645 1.04828 0.91923 0.95265 0.91674 0.92253 0.89353 0.91479 0.91635 0.91139 0.91026 0.90573 0.90037 0.90262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.38 7.04 59.85 0.42 2.80 16 2 N -0.45 -11.12 3.02 -122.19 -0.37 -11.49 16 3 C -0.31 -8.47 9.29 -14.93 -0.14 -8.60 16 4 H 0.10 2.82 7.41 -52.49 -0.39 2.43 16 5 C 0.03 0.81 5.12 -17.46 -0.09 0.72 16 6 N -0.88 -23.14 10.60 55.50 0.59 -22.55 16 7 Si 0.93 20.66 29.57 -169.99 -5.03 15.64 16 8 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 9 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 10 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 11 C 0.45 10.65 7.03 -10.98 -0.08 10.57 16 12 O -0.59 -16.15 15.68 5.55 0.09 -16.06 16 13 C -0.09 -1.56 1.72 -91.77 -0.16 -1.72 16 14 H 0.08 1.27 7.41 -51.93 -0.38 0.89 16 15 C -0.13 -1.91 4.81 -26.73 -0.13 -2.04 16 16 C -0.11 -1.24 5.92 -26.74 -0.16 -1.39 16 17 C -0.12 -1.29 4.96 -26.74 -0.13 -1.42 16 18 C -0.13 -1.60 2.17 -90.59 -0.20 -1.80 16 19 H 0.11 1.17 8.14 -51.93 -0.42 0.74 16 20 C 0.45 5.83 2.69 37.16 0.10 5.93 16 21 F -0.18 -2.55 16.28 2.25 0.04 -2.51 16 22 F -0.18 -2.57 16.80 2.25 0.04 -2.53 16 23 F -0.19 -2.31 16.80 2.25 0.04 -2.27 16 24 C -0.09 -1.47 3.53 -26.70 -0.09 -1.56 16 25 H 0.06 1.38 6.50 -51.93 -0.34 1.04 16 26 H 0.03 0.51 5.77 -51.93 -0.30 0.21 16 27 H 0.06 1.48 7.13 -51.93 -0.37 1.11 16 28 H 0.27 6.66 8.31 -40.82 -0.34 6.32 16 29 H 0.09 1.41 4.59 -51.93 -0.24 1.17 16 30 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.67 7.80 -51.93 -0.41 0.27 16 34 H 0.08 0.88 7.80 -51.93 -0.41 0.47 16 35 H 0.08 1.42 7.76 -51.93 -0.40 1.02 16 36 H 0.08 1.34 7.76 -51.93 -0.40 0.94 16 LS Contribution 295.14 15.07 4.45 4.45 Total: -1.00 -29.96 295.14 -5.27 -35.23 By element: Atomic # 1 Polarization: 5.09 SS G_CDS: -4.46 Total: 0.62 kcal Atomic # 6 Polarization: 2.13 SS G_CDS: -0.65 Total: 1.47 kcal Atomic # 7 Polarization: -34.26 SS G_CDS: 0.22 Total: -34.04 kcal Atomic # 8 Polarization: -16.15 SS G_CDS: 0.09 Total: -16.06 kcal Atomic # 9 Polarization: -7.43 SS G_CDS: 0.11 Total: -7.31 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.03 Total: 15.64 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.96 -5.27 -35.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112011267.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.529 kcal (2) G-P(sol) polarization free energy of solvation -29.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.233 kcal (6) G-S(sol) free energy of system = (1) + (5) -202.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds