Wall clock time and date at job start Tue Mar 31 2020 01:47:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37090 * 120.00320 * 2 1 4 4 H 1.08002 * 120.00359 * 157.41330 * 3 2 1 5 5 C 1.38958 * 120.00018 * 337.41045 * 3 2 1 6 6 N 1.31412 * 119.99441 * 348.71817 * 5 3 2 7 7 Si 1.86797 * 120.00129 * 168.71585 * 5 3 2 8 8 H 1.48497 * 109.46897 * 180.02562 * 7 5 3 9 9 H 1.48495 * 109.47313 * 300.00395 * 7 5 3 10 10 H 1.48504 * 109.46984 * 60.00357 * 7 5 3 11 11 C 1.34777 * 119.99876 * 179.97438 * 2 1 3 12 12 O 1.21291 * 120.00122 * 179.97438 * 11 2 1 13 13 C 1.50703 * 120.00141 * 0.02562 * 11 2 1 14 14 H 1.09000 * 109.46737 * 299.99423 * 13 11 2 15 15 C 1.53003 * 109.47314 * 59.99219 * 13 11 2 16 16 C 1.52999 * 109.47188 * 180.02562 * 15 13 11 17 17 C 1.52991 * 109.47323 * 300.00483 * 16 15 13 18 18 C 1.52997 * 109.47405 * 59.99954 * 17 16 15 19 19 H 1.09000 * 109.47300 * 59.99947 * 18 17 16 20 20 C 1.52999 * 109.47030 * 180.02562 * 18 17 16 21 21 F 1.39901 * 109.47635 * 60.00136 * 20 18 17 22 22 F 1.39909 * 109.47032 * 180.02562 * 20 18 17 23 23 F 1.39900 * 109.47214 * 299.99392 * 20 18 17 24 24 C 1.53001 * 109.47357 * 179.97438 * 13 11 2 25 25 H 1.08999 * 109.46942 * 86.85807 * 1 2 3 26 26 H 1.08999 * 109.47151 * 206.85557 * 1 2 3 27 27 H 1.09002 * 109.46766 * 326.85753 * 1 2 3 28 28 H 0.97002 * 119.99318 * 179.97438 * 6 5 3 29 29 H 1.08994 * 109.47120 * 300.00257 * 15 13 11 30 30 H 1.09004 * 109.46639 * 60.00145 * 15 13 11 31 31 H 1.09000 * 109.46852 * 60.00211 * 16 15 13 32 32 H 1.09000 * 109.47129 * 179.97438 * 16 15 13 33 33 H 1.09000 * 109.47226 * 179.97438 * 17 16 15 34 34 H 1.09000 * 109.46935 * 299.99677 * 17 16 15 35 35 H 1.09000 * 109.46972 * 299.99581 * 24 13 11 36 36 H 1.08998 * 109.46847 * 59.99535 * 24 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1872 0.0000 4 1 3.1684 1.2231 0.3592 5 6 1.5358 2.3445 -0.4623 6 7 0.3896 2.2694 -1.1007 7 14 2.3385 4.0067 -0.1760 8 1 1.4882 5.0743 -0.7613 9 1 2.4895 4.2389 1.2829 10 1 3.6756 4.0284 -0.8217 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1673 0.0001 13 6 1.3854 -2.4723 0.0005 14 1 0.7585 -2.5299 0.8903 15 6 0.5060 -2.5536 -1.2490 16 6 -0.2594 -3.8784 -1.2486 17 6 0.7343 -5.0416 -1.2477 18 6 1.6136 -4.9604 0.0018 19 1 0.9866 -5.0175 0.8916 20 6 2.6077 -6.1233 0.0023 21 9 3.4125 -6.0496 -1.1398 22 9 3.4114 -6.0494 1.1451 23 9 1.9082 -7.3349 0.0024 24 6 2.3796 -3.6353 0.0005 25 1 -0.3633 0.0563 -1.0261 26 1 -0.3633 -0.9168 0.4642 27 1 -0.3633 0.8605 0.5619 28 1 -0.0397 3.0773 -1.4231 29 1 -0.2022 -1.7252 -1.2493 30 1 1.1330 -2.4961 -2.1388 31 1 -0.8864 -3.9355 -0.3588 32 1 -0.8862 -3.9361 -2.1385 33 1 0.1890 -5.9854 -1.2470 34 1 1.3613 -4.9845 -2.1375 35 1 3.0062 -3.5776 -0.8895 36 1 3.0062 -3.5775 0.8905 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112011267.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:47:15 Heat of formation + Delta-G solvation = -220.168408 kcal Electronic energy + Delta-G solvation = -23064.276535 eV Core-core repulsion = 19132.109661 eV Total energy + Delta-G solvation = -3932.166874 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -51.08481 -48.56876 -48.55226 -41.06405 -38.65782 -36.69089 -33.92328 -32.63146 -31.88241 -28.26727 -26.68660 -26.57094 -24.20423 -22.97603 -21.32662 -20.49133 -19.24559 -19.18891 -18.94347 -18.53682 -17.56583 -16.42275 -16.26040 -16.07884 -15.79246 -15.51330 -15.36770 -15.01575 -14.86598 -14.73846 -14.69911 -14.59088 -14.41144 -13.80850 -13.50328 -13.35694 -13.18985 -13.02910 -12.82703 -12.57490 -12.44915 -12.30997 -12.15038 -12.03881 -11.61207 -11.41451 -11.20543 -10.93291 -10.21002 -9.66408 -8.31773 -5.97236 1.38566 1.40546 1.50535 1.79755 2.04425 2.28235 2.78853 2.92617 3.08417 3.10873 3.24174 3.73008 3.76304 3.91873 4.13619 4.22362 4.28956 4.37101 4.39046 4.43977 4.62660 4.76721 5.01304 5.02457 5.06376 5.11316 5.17063 5.25433 5.31800 5.45066 5.47092 5.51577 6.11198 6.50548 7.18719 7.50356 8.06174 8.69102 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.034976 B = 0.004520 C = 0.004184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.347069 B = 6193.454511 C = 6690.200012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.122 3.878 2 N -0.461 5.461 3 C -0.347 4.347 4 H 0.067 0.933 5 C 0.000 4.000 6 N -0.894 5.894 7 Si 0.986 3.014 8 H -0.268 1.268 9 H -0.268 1.268 10 H -0.280 1.280 11 C 0.437 3.563 12 O -0.639 6.639 13 C -0.080 4.080 14 H 0.112 0.888 15 C -0.123 4.123 16 C -0.100 4.100 17 C -0.117 4.117 18 C -0.121 4.121 19 H 0.141 0.859 20 C 0.454 3.546 21 F -0.192 7.192 22 F -0.192 7.192 23 F -0.181 7.181 24 C -0.088 4.088 25 H 0.054 0.946 26 H 0.073 0.927 27 H 0.046 0.954 28 H 0.273 0.727 29 H 0.082 0.918 30 H 0.043 0.957 31 H 0.091 0.909 32 H 0.090 0.910 33 H 0.100 0.900 34 H 0.065 0.935 35 H 0.055 0.945 36 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.580 -14.722 1.093 16.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.179 5.179 3 C -0.475 4.475 4 H 0.085 0.915 5 C -0.201 4.201 6 N -0.533 5.533 7 Si 0.810 3.190 8 H -0.193 1.193 9 H -0.193 1.193 10 H -0.205 1.205 11 C 0.227 3.773 12 O -0.527 6.527 13 C -0.101 4.101 14 H 0.129 0.871 15 C -0.161 4.161 16 C -0.137 4.137 17 C -0.154 4.154 18 C -0.140 4.140 19 H 0.159 0.841 20 C 0.400 3.600 21 F -0.174 7.174 22 F -0.174 7.174 23 F -0.162 7.162 24 C -0.126 4.126 25 H 0.072 0.928 26 H 0.092 0.908 27 H 0.065 0.935 28 H 0.083 0.917 29 H 0.100 0.900 30 H 0.062 0.938 31 H 0.109 0.891 32 H 0.108 0.892 33 H 0.118 0.882 34 H 0.084 0.916 35 H 0.074 0.926 36 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -6.153 -14.583 1.000 15.859 hybrid contribution 1.085 1.000 0.006 1.476 sum -5.068 -13.583 1.005 14.532 Atomic orbital electron populations 1.21611 0.79216 0.99904 1.01322 1.43813 1.06849 1.04507 1.62719 1.19553 0.99229 0.86150 1.42591 0.91519 1.26010 0.97006 1.02587 0.94543 1.70041 1.17642 1.30420 1.35184 0.85112 0.77935 0.77159 0.78821 1.19261 1.19345 1.20532 1.21125 0.87831 0.86475 0.81890 1.90475 1.16533 1.88149 1.57593 1.21032 0.96995 0.90273 1.01828 0.87057 1.21825 0.98479 1.00529 0.95229 1.21454 0.96867 0.90806 1.04618 1.21674 0.97644 1.01237 0.94842 1.22550 0.95748 0.90144 1.05600 0.84080 1.20809 0.81617 0.84750 0.72846 1.93154 1.75932 1.96457 1.51818 1.93167 1.76058 1.96457 1.51713 1.93164 1.78506 1.48331 1.96190 1.21200 0.97007 0.91574 1.02821 0.92762 0.90840 0.93520 0.91698 0.90000 0.93787 0.89092 0.89171 0.88176 0.91636 0.92629 0.91955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.12 7.04 127.77 0.90 6.02 16 2 N -0.46 -23.50 3.02 -658.88 -1.99 -25.49 16 3 C -0.35 -19.87 9.29 84.04 0.78 -19.09 16 4 H 0.07 4.12 7.41 -2.91 -0.02 4.10 16 5 C 0.00 0.03 5.12 84.93 0.44 0.46 16 6 N -0.89 -46.64 10.60 21.67 0.23 -46.41 16 7 Si 0.99 42.61 29.57 68.60 2.03 44.64 16 8 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 9 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 10 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 11 C 0.44 21.19 7.03 87.66 0.62 21.80 16 12 O -0.64 -36.85 15.68 -3.06 -0.05 -36.90 16 13 C -0.08 -2.67 1.72 -11.54 -0.02 -2.69 16 14 H 0.11 3.09 7.41 -2.39 -0.02 3.07 16 15 C -0.12 -3.49 4.81 30.59 0.15 -3.34 16 16 C -0.10 -1.81 5.92 30.59 0.18 -1.63 16 17 C -0.12 -2.13 4.96 30.59 0.15 -1.98 16 18 C -0.12 -2.62 2.17 -10.78 -0.02 -2.64 16 19 H 0.14 2.29 8.14 -2.39 -0.02 2.27 16 20 C 0.45 10.84 2.69 71.98 0.19 11.03 16 21 F -0.19 -5.25 16.28 44.97 0.73 -4.52 16 22 F -0.19 -5.16 16.80 44.97 0.76 -4.40 16 23 F -0.18 -3.88 16.80 44.97 0.76 -3.12 16 24 C -0.09 -2.74 3.53 30.61 0.11 -2.64 16 25 H 0.05 2.35 6.50 -2.39 -0.02 2.34 16 26 H 0.07 2.37 5.77 -2.39 -0.01 2.36 16 27 H 0.05 2.10 7.13 -2.39 -0.02 2.08 16 28 H 0.27 13.38 8.31 -92.71 -0.77 12.61 16 29 H 0.08 2.44 4.59 -2.39 -0.01 2.43 16 30 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 31 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 33 H 0.10 1.36 7.80 -2.39 -0.02 1.34 16 34 H 0.06 1.36 7.80 -2.39 -0.02 1.35 16 35 H 0.05 2.00 7.76 -2.39 -0.02 1.98 16 36 H 0.06 2.13 7.76 -2.39 -0.02 2.11 16 Total: -1.00 -68.21 295.14 7.04 -61.17 By element: Atomic # 1 Polarization: 8.62 SS G_CDS: 1.10 Total: 9.72 kcal Atomic # 6 Polarization: 1.85 SS G_CDS: 3.47 Total: 5.32 kcal Atomic # 7 Polarization: -70.14 SS G_CDS: -1.76 Total: -71.90 kcal Atomic # 8 Polarization: -36.85 SS G_CDS: -0.05 Total: -36.90 kcal Atomic # 9 Polarization: -14.29 SS G_CDS: 2.24 Total: -12.05 kcal Atomic # 14 Polarization: 42.61 SS G_CDS: 2.03 Total: 44.64 kcal Total: -68.21 7.04 -61.17 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112011267.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -158.994 kcal (2) G-P(sol) polarization free energy of solvation -68.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -227.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds