Wall clock time and date at job start Tue Mar 31 2020 00:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47385 * 2 1 4 4 H 1.09002 * 109.47122 * 175.77236 * 3 2 1 5 5 C 1.50702 * 109.46666 * 55.77346 * 3 2 1 6 6 H 1.07998 * 119.99893 * 243.96557 * 5 3 2 7 7 C 1.37876 * 119.99976 * 63.96558 * 5 3 2 8 8 N 1.31510 * 120.00132 * 9.89780 * 7 5 3 9 9 Si 1.86802 * 119.99884 * 189.61897 * 7 5 3 10 10 H 1.48498 * 109.47128 * 59.99960 * 9 7 5 11 11 H 1.48502 * 109.47019 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.46919 * 299.99990 * 9 7 5 13 13 N 1.46898 * 109.47216 * 295.77337 * 3 2 1 14 14 C 1.46893 * 111.00327 * 274.32917 * 13 3 2 15 15 H 1.09004 * 110.26860 * 31.08724 * 14 13 3 16 16 C 1.54341 * 110.30795 * 153.27046 * 14 13 3 17 17 C 1.54343 * 102.39827 * 145.27415 * 16 14 13 18 18 C 1.51375 * 105.16438 * 333.64733 * 17 16 14 19 19 C 1.38487 * 130.37183 * 197.17699 * 18 17 16 20 20 C 1.38218 * 120.20147 * 180.02562 * 19 18 17 21 21 Cl 1.73602 * 120.04626 * 179.97438 * 20 19 18 22 22 C 1.38371 * 119.90682 * 0.02562 * 20 19 18 23 23 C 1.38081 * 119.92208 * 359.97438 * 22 20 19 24 24 C 1.38227 * 109.76261 * 17.19798 * 18 17 16 25 25 H 1.09003 * 109.46890 * 305.57357 * 1 2 3 26 26 H 1.09001 * 109.47469 * 65.57005 * 1 2 3 27 27 H 1.09000 * 109.47753 * 185.57490 * 1 2 3 28 28 H 1.09001 * 109.46601 * 240.00572 * 2 1 3 29 29 H 1.08996 * 109.47440 * 120.00377 * 2 1 3 30 30 H 0.97000 * 120.00196 * 1.83333 * 8 7 5 31 31 H 1.00904 * 110.99712 * 38.28378 * 13 3 2 32 32 H 1.09001 * 110.81747 * 263.50190 * 16 14 13 33 33 H 1.09003 * 110.82000 * 27.04507 * 16 14 13 34 34 H 1.08994 * 110.30628 * 214.72757 * 17 16 14 35 35 H 1.08996 * 110.38935 * 92.60468 * 17 16 14 36 36 H 1.07993 * 119.89941 * 0.02994 * 19 18 17 37 37 H 1.08005 * 120.03614 * 179.97438 * 22 20 19 38 38 H 1.08001 * 119.88001 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1274 1.4434 0.0758 5 6 1.4540 2.1824 1.1748 6 1 0.7905 3.0184 1.0099 7 6 1.7649 1.7921 2.4601 8 7 2.7164 0.9081 2.6668 9 14 0.8399 2.5246 3.9082 10 1 -0.6067 2.2151 3.7793 11 1 1.3600 1.9445 5.1724 12 1 1.0315 3.9972 3.9242 13 7 1.6355 2.1049 -1.2472 14 6 2.6048 1.8448 -2.3198 15 1 3.0629 0.8649 -2.1854 16 6 1.9150 1.9314 -3.6978 17 6 3.0258 2.5286 -4.5875 18 6 3.9091 3.3157 -3.6433 19 6 4.8501 4.2978 -3.9042 20 6 5.5478 4.8856 -2.8658 21 17 6.7270 6.1158 -3.1975 22 6 5.3058 4.4914 -1.5617 23 6 4.3677 3.5123 -1.3009 24 6 3.6674 2.9228 -2.3403 25 1 -0.3633 0.5979 0.8359 26 1 -0.3634 0.4250 -0.9356 27 1 -0.3634 -1.0228 0.0998 28 1 1.8932 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 3.2175 0.5506 1.9172 31 1 0.7070 1.8216 -1.5224 32 1 1.6272 0.9408 -4.0498 33 1 1.0516 2.5955 -3.6577 34 1 2.5939 3.1885 -5.3399 35 1 3.5977 1.7336 -5.0659 36 1 5.0393 4.6053 -4.9220 37 1 5.8501 4.9490 -0.7488 38 1 4.1791 3.2054 -0.2827 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127463926.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:28 Heat of formation + Delta-G solvation = 5.094787 kcal Electronic energy + Delta-G solvation = -19727.038614 eV Core-core repulsion = 16787.205791 eV Total energy + Delta-G solvation = -2939.832823 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.05348 -37.17983 -36.27494 -34.90712 -32.34665 -31.09735 -29.74922 -28.71066 -26.53323 -24.57138 -23.57554 -22.63117 -20.91972 -20.35820 -19.44264 -16.82538 -16.35970 -15.82586 -15.33055 -14.89942 -14.15911 -13.83843 -13.65664 -13.45603 -13.18539 -13.07666 -13.01760 -12.44927 -12.28327 -11.92009 -11.49789 -11.37945 -11.23246 -11.10486 -10.93829 -10.78860 -10.59922 -10.50060 -10.21320 -10.13883 -10.05186 -9.85210 -8.69325 -8.62788 -8.25149 -8.22061 -7.40505 -6.32815 -4.00545 1.39985 1.53616 2.23956 3.45514 3.45965 3.64743 3.85178 4.52302 4.55394 4.77364 4.99048 5.09328 5.20069 5.35047 5.36896 5.40397 5.58474 5.74634 5.78671 5.89594 5.94787 6.04171 6.06776 6.10074 6.25226 6.28156 6.33749 6.42101 6.57270 6.64034 6.89749 6.95482 7.00602 7.11233 7.21339 7.28032 7.88999 8.23244 8.39489 8.64002 8.90468 9.66474 11.03273 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.017946 B = 0.005313 C = 0.004321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.885571 B = 5268.521572 C = 6477.996245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.151 4.151 3 C 0.203 3.797 4 H 0.026 0.974 5 C -0.571 4.571 6 H 0.055 0.945 7 C 0.020 3.980 8 N -0.913 5.913 9 Si 1.062 2.938 10 H -0.289 1.289 11 H -0.285 1.285 12 H -0.289 1.289 13 N -0.666 5.666 14 C 0.117 3.883 15 H 0.055 0.945 16 C -0.123 4.123 17 C -0.074 4.074 18 C -0.095 4.095 19 C -0.107 4.107 20 C -0.039 4.039 21 Cl -0.085 7.085 22 C -0.114 4.114 23 C -0.070 4.070 24 C -0.056 4.056 25 H 0.073 0.927 26 H 0.032 0.968 27 H 0.027 0.973 28 H 0.019 0.981 29 H 0.067 0.933 30 H 0.268 0.732 31 H 0.332 0.668 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.124 0.876 37 H 0.131 0.869 38 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.417 3.322 -13.267 13.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.191 4.191 3 C 0.095 3.905 4 H 0.044 0.956 5 C -0.610 4.610 6 H 0.073 0.927 7 C -0.183 4.183 8 N -0.550 5.550 9 Si 0.891 3.109 10 H -0.215 1.215 11 H -0.210 1.210 12 H -0.215 1.215 13 N -0.297 5.297 14 C 0.007 3.993 15 H 0.073 0.927 16 C -0.161 4.161 17 C -0.111 4.111 18 C -0.096 4.096 19 C -0.126 4.126 20 C -0.066 4.066 21 Cl -0.056 7.056 22 C -0.132 4.132 23 C -0.088 4.088 24 C -0.057 4.057 25 H 0.092 0.908 26 H 0.051 0.949 27 H 0.046 0.954 28 H 0.038 0.962 29 H 0.085 0.915 30 H 0.079 0.921 31 H 0.152 0.848 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.096 0.904 36 H 0.142 0.858 37 H 0.149 0.851 38 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 2.655 3.990 -11.452 12.415 hybrid contribution 0.135 -0.750 -1.841 1.993 sum 2.790 3.240 -13.294 13.964 Atomic orbital electron populations 1.21592 0.96703 0.99202 1.01379 1.22218 0.96207 1.01301 0.99391 1.19416 0.95359 0.88348 0.87386 0.95632 1.21781 1.31305 1.17041 0.90843 0.92656 1.25664 0.96588 0.96084 1.00008 1.70823 1.19657 1.29328 1.35173 0.83637 0.75622 0.75740 0.75921 1.21542 1.21033 1.21540 1.60846 1.03478 1.62682 1.02740 1.21026 0.92230 0.94379 0.91673 0.92729 1.22543 0.98171 1.01197 0.94220 1.20950 0.95229 0.98208 0.96739 1.20447 0.97045 0.96458 0.95661 1.20271 0.96857 0.97295 0.98161 1.20647 0.95893 0.95216 0.94811 1.98336 1.57456 1.54014 1.95784 1.20975 0.99209 0.98350 0.94706 1.20870 0.93285 0.94245 1.00429 1.20696 0.95731 0.96628 0.92601 0.90776 0.94868 0.95356 0.96247 0.91456 0.92136 0.84805 0.90863 0.90035 0.90760 0.90358 0.85790 0.85146 0.84162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.60 9.39 37.16 0.35 -2.25 16 2 C -0.15 -3.28 5.46 -26.73 -0.15 -3.43 16 3 C 0.20 4.66 1.55 -68.86 -0.11 4.56 16 4 H 0.03 0.65 5.92 -51.93 -0.31 0.34 16 5 C -0.57 -14.88 7.22 -34.44 -0.25 -15.13 16 6 H 0.06 1.50 7.83 -52.49 -0.41 1.09 16 7 C 0.02 0.55 5.21 -17.82 -0.09 0.46 16 8 N -0.91 -26.04 12.96 55.43 0.72 -25.32 16 9 Si 1.06 24.50 29.91 -169.99 -5.09 19.41 16 10 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.29 -6.50 7.11 56.52 0.40 -6.09 16 13 N -0.67 -13.15 6.03 -101.08 -0.61 -13.76 16 14 C 0.12 1.99 2.95 -67.83 -0.20 1.79 16 15 H 0.06 0.97 7.24 -51.93 -0.38 0.60 16 16 C -0.12 -1.62 6.47 -25.33 -0.16 -1.78 16 17 C -0.07 -0.88 6.77 -26.85 -0.18 -1.06 16 18 C -0.10 -1.41 6.14 -104.20 -0.64 -2.05 16 19 C -0.11 -1.50 9.83 -39.50 -0.39 -1.89 16 20 C -0.04 -0.58 6.32 -39.54 -0.25 -0.83 16 21 Cl -0.08 -1.10 28.96 -51.86 -1.50 -2.60 16 22 C -0.11 -1.82 9.83 -39.59 -0.39 -2.21 16 23 C -0.07 -1.27 9.72 -39.54 -0.38 -1.65 16 24 C -0.06 -0.96 5.78 -104.20 -0.60 -1.56 16 25 H 0.07 1.64 6.89 -51.93 -0.36 1.28 16 26 H 0.03 0.58 6.62 -51.93 -0.34 0.24 16 27 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.02 0.38 7.52 -51.93 -0.39 -0.01 16 29 H 0.07 1.64 6.43 -51.93 -0.33 1.30 16 30 H 0.27 7.59 6.11 -40.82 -0.25 7.34 16 31 H 0.33 6.21 6.20 -39.29 -0.24 5.96 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.08 1.07 8.03 -51.93 -0.42 0.66 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.12 1.46 8.06 -52.49 -0.42 1.03 16 37 H 0.13 1.89 8.06 -52.48 -0.42 1.47 16 38 H 0.14 2.89 6.82 -52.49 -0.36 2.53 16 LS Contribution 316.10 15.07 4.76 4.76 Total: -1.00 -27.55 316.10 -10.28 -37.83 By element: Atomic # 1 Polarization: 11.83 SS G_CDS: -5.12 Total: 6.71 kcal Atomic # 6 Polarization: -23.59 SS G_CDS: -3.44 Total: -27.03 kcal Atomic # 7 Polarization: -39.20 SS G_CDS: 0.11 Total: -39.09 kcal Atomic # 14 Polarization: 24.50 SS G_CDS: -5.09 Total: 19.41 kcal Atomic # 17 Polarization: -1.10 SS G_CDS: -1.50 Total: -2.60 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -27.55 -10.28 -37.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127463926.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.924 kcal (2) G-P(sol) polarization free energy of solvation -27.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.278 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.830 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds