Wall clock time and date at job start Tue Mar 31 2020 00:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47385 * 2 1 4 4 H 1.09002 * 109.47122 * 175.77236 * 3 2 1 5 5 C 1.50702 * 109.46666 * 55.77346 * 3 2 1 6 6 H 1.07998 * 119.99893 * 243.96557 * 5 3 2 7 7 C 1.37876 * 119.99976 * 63.96558 * 5 3 2 8 8 N 1.31510 * 120.00132 * 9.89780 * 7 5 3 9 9 Si 1.86802 * 119.99884 * 189.61897 * 7 5 3 10 10 H 1.48498 * 109.47128 * 59.99960 * 9 7 5 11 11 H 1.48502 * 109.47019 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.46919 * 299.99990 * 9 7 5 13 13 N 1.46898 * 109.47216 * 295.77337 * 3 2 1 14 14 C 1.46893 * 111.00327 * 274.32917 * 13 3 2 15 15 H 1.09004 * 110.26860 * 31.08724 * 14 13 3 16 16 C 1.54341 * 110.30795 * 153.27046 * 14 13 3 17 17 C 1.54343 * 102.39827 * 145.27415 * 16 14 13 18 18 C 1.51375 * 105.16438 * 333.64733 * 17 16 14 19 19 C 1.38487 * 130.37183 * 197.17699 * 18 17 16 20 20 C 1.38218 * 120.20147 * 180.02562 * 19 18 17 21 21 Cl 1.73602 * 120.04626 * 179.97438 * 20 19 18 22 22 C 1.38371 * 119.90682 * 0.02562 * 20 19 18 23 23 C 1.38081 * 119.92208 * 359.97438 * 22 20 19 24 24 C 1.38227 * 109.76261 * 17.19798 * 18 17 16 25 25 H 1.09003 * 109.46890 * 305.57357 * 1 2 3 26 26 H 1.09001 * 109.47469 * 65.57005 * 1 2 3 27 27 H 1.09000 * 109.47753 * 185.57490 * 1 2 3 28 28 H 1.09001 * 109.46601 * 240.00572 * 2 1 3 29 29 H 1.08996 * 109.47440 * 120.00377 * 2 1 3 30 30 H 0.97000 * 120.00196 * 1.83333 * 8 7 5 31 31 H 1.00904 * 110.99712 * 38.28378 * 13 3 2 32 32 H 1.09001 * 110.81747 * 263.50190 * 16 14 13 33 33 H 1.09003 * 110.82000 * 27.04507 * 16 14 13 34 34 H 1.08994 * 110.30628 * 214.72757 * 17 16 14 35 35 H 1.08996 * 110.38935 * 92.60468 * 17 16 14 36 36 H 1.07993 * 119.89941 * 0.02994 * 19 18 17 37 37 H 1.08005 * 120.03614 * 179.97438 * 22 20 19 38 38 H 1.08001 * 119.88001 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1274 1.4434 0.0758 5 6 1.4540 2.1824 1.1748 6 1 0.7905 3.0184 1.0099 7 6 1.7649 1.7921 2.4601 8 7 2.7164 0.9081 2.6668 9 14 0.8399 2.5246 3.9082 10 1 -0.6067 2.2151 3.7793 11 1 1.3600 1.9445 5.1724 12 1 1.0315 3.9972 3.9242 13 7 1.6355 2.1049 -1.2472 14 6 2.6048 1.8448 -2.3198 15 1 3.0629 0.8649 -2.1854 16 6 1.9150 1.9314 -3.6978 17 6 3.0258 2.5286 -4.5875 18 6 3.9091 3.3157 -3.6433 19 6 4.8501 4.2978 -3.9042 20 6 5.5478 4.8856 -2.8658 21 17 6.7270 6.1158 -3.1975 22 6 5.3058 4.4914 -1.5617 23 6 4.3677 3.5123 -1.3009 24 6 3.6674 2.9228 -2.3403 25 1 -0.3633 0.5979 0.8359 26 1 -0.3634 0.4250 -0.9356 27 1 -0.3634 -1.0228 0.0998 28 1 1.8932 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8899 30 1 3.2175 0.5506 1.9172 31 1 0.7070 1.8216 -1.5224 32 1 1.6272 0.9408 -4.0498 33 1 1.0516 2.5955 -3.6577 34 1 2.5939 3.1885 -5.3399 35 1 3.5977 1.7336 -5.0659 36 1 5.0393 4.6053 -4.9220 37 1 5.8501 4.9490 -0.7488 38 1 4.1791 3.2054 -0.2827 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000127463926.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:55:24 Heat of formation + Delta-G solvation = -9.125148 kcal Electronic energy + Delta-G solvation = -19727.655237 eV Core-core repulsion = 16787.205791 eV Total energy + Delta-G solvation = -2940.449446 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 3.44 seconds Orbital eigenvalues (eV) -41.27798 -38.63314 -37.60130 -36.22304 -34.09141 -32.64046 -31.17976 -29.87780 -28.15030 -26.21058 -25.36787 -23.82259 -22.16567 -21.71484 -21.10673 -18.70668 -17.63378 -17.15425 -16.53862 -16.20392 -15.82927 -15.50188 -15.24652 -15.03190 -14.60745 -14.30417 -14.26935 -13.91207 -13.87605 -13.17719 -12.97683 -12.65127 -12.61323 -12.51373 -12.37472 -12.28784 -12.00870 -11.92980 -11.78185 -11.76096 -11.65426 -11.50333 -10.65786 -10.29794 -9.83486 -9.45640 -9.02736 -8.48836 -6.16307 0.16768 0.30943 1.08830 1.55058 1.61054 1.79850 2.58409 2.62440 3.27247 3.43041 3.60677 3.64351 3.95471 4.04486 4.19052 4.23611 4.33122 4.35935 4.44290 4.53891 4.55613 4.70137 4.75825 4.89878 4.95358 5.00909 5.12359 5.15982 5.19178 5.23813 5.27058 5.34695 5.44627 5.58466 5.67468 5.83055 6.03552 6.23949 6.59098 6.81001 6.83695 7.57730 8.87019 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.017946 B = 0.005313 C = 0.004321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.885571 B = 5268.521572 C = 6477.996245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.144 4.144 3 C 0.212 3.788 4 H -0.007 1.007 5 C -0.570 4.570 6 H 0.042 0.958 7 C -0.025 4.025 8 N -0.939 5.939 9 Si 1.102 2.898 10 H -0.270 1.270 11 H -0.290 1.290 12 H -0.280 1.280 13 N -0.672 5.672 14 C 0.113 3.887 15 H 0.041 0.959 16 C -0.114 4.114 17 C -0.067 4.067 18 C -0.089 4.089 19 C -0.101 4.101 20 C -0.040 4.040 21 Cl -0.065 7.065 22 C -0.122 4.122 23 C -0.096 4.096 24 C -0.084 4.084 25 H 0.047 0.953 26 H 0.058 0.942 27 H 0.047 0.953 28 H 0.038 0.962 29 H 0.034 0.966 30 H 0.256 0.744 31 H 0.339 0.661 32 H 0.096 0.904 33 H 0.083 0.917 34 H 0.102 0.898 35 H 0.100 0.900 36 H 0.157 0.843 37 H 0.135 0.865 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.551 3.893 -16.184 16.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.184 4.184 3 C 0.103 3.897 4 H 0.011 0.989 5 C -0.609 4.609 6 H 0.060 0.940 7 C -0.223 4.223 8 N -0.577 5.577 9 Si 0.926 3.074 10 H -0.196 1.196 11 H -0.215 1.215 12 H -0.206 1.206 13 N -0.303 5.303 14 C 0.003 3.997 15 H 0.058 0.942 16 C -0.152 4.152 17 C -0.104 4.104 18 C -0.090 4.090 19 C -0.119 4.119 20 C -0.067 4.067 21 Cl -0.036 7.036 22 C -0.141 4.141 23 C -0.115 4.115 24 C -0.085 4.085 25 H 0.066 0.934 26 H 0.077 0.923 27 H 0.066 0.934 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.066 0.934 31 H 0.159 0.841 32 H 0.115 0.885 33 H 0.101 0.899 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.174 0.826 37 H 0.153 0.847 38 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 1.779 4.568 -14.397 15.209 hybrid contribution 0.489 -0.865 -0.998 1.408 sum 2.268 3.703 -15.395 15.996 Atomic orbital electron populations 1.21495 0.94821 1.00203 1.01570 1.22078 0.97769 0.99888 0.98649 1.19107 0.93120 0.89191 0.88253 0.98947 1.22013 1.30267 1.16454 0.92136 0.93999 1.26823 0.96700 0.96031 1.02791 1.70924 1.21051 1.31072 1.34663 0.83110 0.75591 0.75532 0.73165 1.19564 1.21545 1.20558 1.60685 1.04513 1.62476 1.02659 1.21171 0.91906 0.93684 0.92971 0.94167 1.22546 0.98286 1.02830 0.91540 1.21040 0.94304 0.98803 0.96252 1.20821 0.96983 0.96121 0.95042 1.20632 0.95691 0.96254 0.99350 1.20735 0.96128 0.95430 0.94364 1.98343 1.56638 1.53081 1.95580 1.20994 0.99008 0.98124 0.95978 1.20658 0.95514 0.96323 0.98998 1.20867 0.96413 0.97475 0.93738 0.93411 0.92338 0.93351 0.94359 0.94724 0.93412 0.84074 0.88514 0.89857 0.87951 0.88149 0.82582 0.84746 0.88339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.78 9.39 71.98 0.68 -4.11 16 2 C -0.14 -6.35 5.46 30.59 0.17 -6.19 16 3 C 0.21 10.16 1.55 44.17 0.07 10.23 16 4 H -0.01 -0.40 5.92 -2.39 -0.01 -0.41 16 5 C -0.57 -30.80 7.22 25.60 0.18 -30.62 16 6 H 0.04 2.33 7.83 -2.91 -0.02 2.31 16 7 C -0.03 -1.40 5.21 84.66 0.44 -0.96 16 8 N -0.94 -56.02 12.96 21.45 0.28 -55.74 16 9 Si 1.10 50.35 29.91 68.60 2.05 52.40 16 10 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 11 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 12 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 13 N -0.67 -26.80 6.03 -473.70 -2.85 -29.65 16 14 C 0.11 3.77 2.95 44.84 0.13 3.90 16 15 H 0.04 1.45 7.24 -2.38 -0.02 1.43 16 16 C -0.11 -2.63 6.47 31.50 0.20 -2.43 16 17 C -0.07 -1.31 6.77 30.52 0.21 -1.10 16 18 C -0.09 -2.41 6.14 -19.59 -0.12 -2.53 16 19 C -0.10 -2.54 9.83 22.32 0.22 -2.32 16 20 C -0.04 -1.12 6.32 22.30 0.14 -0.98 16 21 Cl -0.07 -1.57 28.96 -2.72 -0.08 -1.65 16 22 C -0.12 -4.02 9.83 22.26 0.22 -3.80 16 23 C -0.10 -3.71 9.72 22.30 0.22 -3.49 16 24 C -0.08 -2.91 5.78 -19.59 -0.11 -3.03 16 25 H 0.05 2.09 6.89 -2.39 -0.02 2.08 16 26 H 0.06 1.94 6.62 -2.39 -0.02 1.92 16 27 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.04 1.51 7.52 -2.39 -0.02 1.49 16 29 H 0.03 1.74 6.43 -2.39 -0.02 1.72 16 30 H 0.26 15.46 6.11 -92.71 -0.57 14.90 16 31 H 0.34 12.35 6.20 -89.69 -0.56 11.79 16 32 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.08 1.92 8.03 -2.39 -0.02 1.90 16 34 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 35 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 36 H 0.16 2.94 8.06 -2.91 -0.02 2.91 16 37 H 0.13 4.11 8.06 -2.91 -0.02 4.08 16 38 H 0.10 4.54 6.82 -2.91 -0.02 4.52 16 Total: -1.00 -62.65 316.10 2.75 -59.90 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: 0.71 Total: 22.16 kcal Atomic # 6 Polarization: -50.07 SS G_CDS: 2.64 Total: -47.43 kcal Atomic # 7 Polarization: -82.81 SS G_CDS: -2.58 Total: -85.39 kcal Atomic # 14 Polarization: 50.35 SS G_CDS: 2.05 Total: 52.40 kcal Atomic # 17 Polarization: -1.57 SS G_CDS: -0.08 Total: -1.65 kcal Total: -62.65 2.75 -59.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127463926.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.775 kcal (2) G-P(sol) polarization free energy of solvation -62.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.44 seconds