Wall clock time and date at job start Tue Mar 31 2020 00:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.47246 * 2 1 4 4 N 1.29023 * 124.91496 * 90.00202 * 3 2 1 5 5 C 1.31787 * 117.12197 * 179.97438 * 4 3 2 6 6 C 1.50700 * 122.74736 * 179.97438 * 5 4 3 7 7 N 1.46904 * 109.47365 * 275.02546 * 6 5 4 8 8 C 1.46897 * 110.99963 * 190.00091 * 7 6 5 9 9 C 1.50704 * 109.47230 * 71.92414 * 8 7 6 10 10 H 1.07999 * 119.99777 * 355.42486 * 9 8 7 11 11 C 1.37873 * 120.00272 * 175.43009 * 9 8 7 12 12 N 1.31521 * 119.99722 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 120.00270 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47319 * 59.99719 * 13 11 9 15 15 H 1.48497 * 109.47214 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47119 * 299.99698 * 13 11 9 17 17 C 1.46895 * 110.99636 * 66.04570 * 7 6 5 18 18 C 1.53011 * 109.46845 * 199.89073 * 17 7 6 19 19 C 1.47195 * 109.46857 * 181.70774 * 18 17 7 20 20 N 6.30019 * 53.68268 * 55.05956 * 2 1 3 21 21 C 1.33634 * 114.50216 * 0.22769 * 5 4 3 22 22 S 1.70975 * 124.91471 * 270.00052 * 3 2 1 23 23 H 1.08996 * 109.47812 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47421 * 300.00379 * 1 2 3 25 25 H 1.09002 * 109.46796 * 59.99796 * 1 2 3 26 26 H 1.09003 * 109.47001 * 239.99946 * 2 1 3 27 27 H 1.09002 * 109.46796 * 120.00204 * 2 1 3 28 28 H 1.08997 * 109.46833 * 155.02401 * 6 5 4 29 29 H 1.09004 * 109.46814 * 35.02601 * 6 5 4 30 30 H 1.08999 * 109.47337 * 191.92314 * 8 7 6 31 31 H 1.09003 * 109.47119 * 311.92594 * 8 7 6 32 32 H 0.96995 * 119.99924 * 180.02562 * 12 11 9 33 33 H 1.08993 * 109.47651 * 319.88749 * 17 7 6 34 34 H 1.09003 * 109.47496 * 79.89680 * 17 7 6 35 35 H 1.08996 * 109.46646 * 301.71151 * 18 17 7 36 36 H 1.08993 * 109.46722 * 61.70982 * 18 17 7 37 37 H 1.07998 * 126.03932 * 179.76604 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2786 2.1170 1.0580 5 6 2.7143 3.3479 0.8793 6 6 3.0404 4.2715 2.0245 7 7 1.8150 4.9451 2.4747 8 6 2.1248 6.0224 3.4240 9 6 2.7640 7.1719 2.6884 10 1 2.9916 7.0801 1.6366 11 6 3.0582 8.3406 3.3580 12 7 2.7807 8.4525 4.6387 13 14 3.8499 9.7657 2.4460 14 1 2.9602 10.2006 1.3393 15 1 4.0616 10.8973 3.3840 16 1 5.1566 9.3324 1.8894 17 6 0.8703 3.9839 3.0590 18 6 -0.5363 4.5862 3.0580 19 6 -1.4758 3.6396 3.6807 20 7 -2.2013 2.9074 4.1613 21 6 2.8383 3.7116 -0.4006 22 16 2.3586 2.3434 -1.4020 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.7647 5.0166 1.6954 29 1 3.4614 3.6946 2.8480 30 1 1.2053 6.3623 3.9006 31 1 2.8119 5.6504 4.1841 32 1 2.9874 9.2748 5.1097 33 1 0.8733 3.0672 2.4694 34 1 1.1681 3.7583 4.0830 35 1 -0.5324 5.5188 3.6222 36 1 -0.8461 4.7837 2.0318 37 1 3.1742 4.6737 -0.7581 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132851702.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:40 Heat of formation + Delta-G solvation = 65.788502 kcal Electronic energy + Delta-G solvation = -19138.622076 eV Core-core repulsion = 16235.757587 eV Total energy + Delta-G solvation = -2902.864489 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.86931 -37.22824 -35.97861 -34.09313 -32.69730 -31.23388 -29.57697 -27.40662 -25.70526 -25.07076 -23.09932 -21.86692 -20.18791 -19.45000 -17.58932 -16.98888 -16.52114 -15.62386 -15.05745 -14.70227 -14.55856 -14.45505 -14.03792 -13.95214 -13.57615 -13.05421 -12.82850 -12.58436 -12.32574 -12.06669 -12.04041 -11.84676 -11.61587 -11.36284 -11.27149 -11.08050 -10.89433 -10.80932 -10.68219 -10.38106 -9.89589 -9.44298 -9.32716 -9.18625 -8.55341 -8.47242 -7.42063 -6.08229 -4.10205 0.89855 1.51189 1.88871 2.93083 3.05446 3.06164 3.29852 3.35310 3.36897 4.11773 4.24740 4.40769 4.84266 5.01876 5.07703 5.18469 5.29607 5.43802 5.48870 5.52475 5.60081 5.63415 5.66417 5.80640 5.96716 6.03159 6.13911 6.23797 6.30350 6.41910 6.55032 7.09082 7.23648 7.71045 7.82735 7.94485 7.97202 8.08715 8.42161 8.96302 9.54455 11.02241 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.015045 B = 0.005412 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.662309 B = 5172.854135 C = 6659.646513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.044 4.044 3 C 0.045 3.955 4 N -0.464 5.464 5 C 0.083 3.917 6 C 0.136 3.864 7 N -0.528 5.528 8 C 0.190 3.810 9 C -0.509 4.509 10 H 0.063 0.937 11 C 0.058 3.942 12 N -0.897 5.897 13 Si 0.896 3.104 14 H -0.276 1.276 15 H -0.289 1.289 16 H -0.277 1.277 17 C 0.054 3.946 18 C -0.026 4.026 19 C 0.221 3.779 20 N -0.460 5.460 21 C -0.231 4.231 22 S 0.086 5.914 23 H 0.064 0.936 24 H 0.062 0.938 25 H 0.057 0.943 26 H 0.082 0.918 27 H 0.091 0.909 28 H 0.102 0.898 29 H 0.041 0.959 30 H 0.040 0.960 31 H -0.007 1.007 32 H 0.263 0.737 33 H 0.083 0.917 34 H 0.034 0.966 35 H 0.115 0.885 36 H 0.110 0.890 37 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.944 -12.626 -11.320 16.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.085 4.085 3 C -0.233 4.233 4 N -0.180 5.180 5 C -0.048 4.048 6 C 0.006 3.994 7 N -0.252 5.252 8 C 0.065 3.935 9 C -0.548 4.548 10 H 0.081 0.919 11 C -0.144 4.144 12 N -0.536 5.536 13 Si 0.724 3.276 14 H -0.202 1.202 15 H -0.214 1.214 16 H -0.203 1.203 17 C -0.076 4.076 18 C -0.066 4.066 19 C -0.096 4.096 20 N -0.138 5.138 21 C -0.371 4.371 22 S 0.340 5.660 23 H 0.083 0.917 24 H 0.081 0.919 25 H 0.076 0.924 26 H 0.100 0.900 27 H 0.109 0.891 28 H 0.120 0.880 29 H 0.060 0.940 30 H 0.058 0.942 31 H 0.011 0.989 32 H 0.072 0.928 33 H 0.101 0.899 34 H 0.052 0.948 35 H 0.133 0.867 36 H 0.128 0.872 37 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -2.374 -13.782 -11.403 18.045 hybrid contribution 1.292 1.526 0.805 2.155 sum -1.082 -12.257 -10.598 16.240 Atomic orbital electron populations 1.21760 0.93658 1.02275 1.02810 1.20165 0.96607 0.87904 1.03847 1.26948 1.03797 1.01574 0.91003 1.66121 1.14219 1.06220 1.31392 1.20463 0.99026 0.90431 0.94890 1.20553 0.93384 0.93541 0.91939 1.62046 1.11219 1.10242 1.41735 1.19856 0.96612 0.87537 0.89469 1.21077 1.39503 0.97878 0.96310 0.91860 1.24962 0.95980 0.98592 0.94844 1.69935 1.47925 1.27354 1.08400 0.86590 0.79780 0.81732 0.79473 1.20170 1.21425 1.20302 1.22011 0.90647 0.96143 0.98794 1.19354 0.90705 0.94932 1.01620 1.29511 0.93592 0.93694 0.92840 1.81193 1.11272 1.10884 1.10471 1.26822 1.11397 1.03442 0.95413 1.83783 1.61863 1.06770 1.13594 0.91674 0.91908 0.92394 0.89996 0.89061 0.87962 0.94042 0.94236 0.98911 0.92784 0.89872 0.94773 0.86723 0.87199 0.80384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.89 37.16 0.37 -0.95 16 2 C -0.04 -0.42 6.52 -27.88 -0.18 -0.60 16 3 C 0.05 0.57 6.64 -13.46 -0.09 0.48 16 4 N -0.46 -7.11 8.88 -8.06 -0.07 -7.18 16 5 C 0.08 1.31 5.64 -84.22 -0.48 0.83 16 6 C 0.14 2.44 5.24 -4.97 -0.03 2.41 16 7 N -0.53 -10.10 4.37 -237.51 -1.04 -11.14 16 8 C 0.19 4.42 4.55 -4.98 -0.02 4.40 16 9 C -0.51 -12.98 8.53 -34.44 -0.29 -13.27 16 10 H 0.06 1.58 7.42 -52.49 -0.39 1.19 16 11 C 0.06 1.53 5.46 -17.82 -0.10 1.44 16 12 N -0.90 -25.15 13.29 55.43 0.74 -24.42 16 13 Si 0.90 20.42 29.54 -169.99 -5.02 15.40 16 14 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 15 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 16 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 17 C 0.05 0.92 4.80 -3.82 -0.02 0.90 16 18 C -0.03 -0.38 5.84 -29.51 -0.17 -0.56 16 19 C 0.22 3.50 15.44 -20.72 -0.32 3.18 16 20 N -0.46 -8.16 18.55 42.21 0.78 -7.37 16 21 C -0.23 -3.24 11.12 29.12 0.32 -2.92 16 22 S 0.09 0.99 23.18 -107.50 -2.49 -1.50 16 23 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.10 1.89 6.97 -51.93 -0.36 1.53 16 29 H 0.04 0.76 8.12 -51.93 -0.42 0.34 16 30 H 0.04 0.97 6.53 -51.93 -0.34 0.63 16 31 H -0.01 -0.18 8.05 -51.93 -0.42 -0.59 16 32 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 33 H 0.08 1.40 5.63 -51.93 -0.29 1.10 16 34 H 0.03 0.61 8.00 -51.93 -0.42 0.19 16 35 H 0.11 1.78 6.72 -51.93 -0.35 1.43 16 36 H 0.11 1.50 8.14 -51.93 -0.42 1.07 16 37 H 0.18 2.30 8.06 -52.49 -0.42 1.88 16 LS Contribution 331.45 15.07 4.99 4.99 Total: -1.00 -29.04 331.45 -8.20 -37.24 By element: Atomic # 1 Polarization: 3.71 SS G_CDS: -5.08 Total: -1.37 kcal Atomic # 6 Polarization: -3.64 SS G_CDS: -1.01 Total: -4.65 kcal Atomic # 7 Polarization: -50.52 SS G_CDS: 0.41 Total: -50.11 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 16 Polarization: 0.99 SS G_CDS: -2.49 Total: -1.50 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.04 -8.20 -37.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132851702.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.025 kcal (2) G-P(sol) polarization free energy of solvation -29.042 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds