Wall clock time and date at job start Tue Mar 31 2020 00:41:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50698 * 109.47246 * 2 1 4 4 N 1.29023 * 124.91496 * 90.00202 * 3 2 1 5 5 C 1.31787 * 117.12197 * 179.97438 * 4 3 2 6 6 C 1.50700 * 122.74736 * 179.97438 * 5 4 3 7 7 N 1.46904 * 109.47365 * 275.02546 * 6 5 4 8 8 C 1.46897 * 110.99963 * 190.00091 * 7 6 5 9 9 C 1.50704 * 109.47230 * 71.92414 * 8 7 6 10 10 H 1.07999 * 119.99777 * 355.42486 * 9 8 7 11 11 C 1.37873 * 120.00272 * 175.43009 * 9 8 7 12 12 N 1.31521 * 119.99722 * 359.97438 * 11 9 8 13 13 Si 1.86795 * 120.00270 * 180.02562 * 11 9 8 14 14 H 1.48499 * 109.47319 * 59.99719 * 13 11 9 15 15 H 1.48497 * 109.47214 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47119 * 299.99698 * 13 11 9 17 17 C 1.46895 * 110.99636 * 66.04570 * 7 6 5 18 18 C 1.53011 * 109.46845 * 199.89073 * 17 7 6 19 19 C 1.47195 * 109.46857 * 181.70774 * 18 17 7 20 20 N 6.30019 * 53.68268 * 55.05956 * 2 1 3 21 21 C 1.33634 * 114.50216 * 0.22769 * 5 4 3 22 22 S 1.70975 * 124.91471 * 270.00052 * 3 2 1 23 23 H 1.08996 * 109.47812 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.47421 * 300.00379 * 1 2 3 25 25 H 1.09002 * 109.46796 * 59.99796 * 1 2 3 26 26 H 1.09003 * 109.47001 * 239.99946 * 2 1 3 27 27 H 1.09002 * 109.46796 * 120.00204 * 2 1 3 28 28 H 1.08997 * 109.46833 * 155.02401 * 6 5 4 29 29 H 1.09004 * 109.46814 * 35.02601 * 6 5 4 30 30 H 1.08999 * 109.47337 * 191.92314 * 8 7 6 31 31 H 1.09003 * 109.47119 * 311.92594 * 8 7 6 32 32 H 0.96995 * 119.99924 * 180.02562 * 12 11 9 33 33 H 1.08993 * 109.47651 * 319.88749 * 17 7 6 34 34 H 1.09003 * 109.47496 * 79.89680 * 17 7 6 35 35 H 1.08996 * 109.46646 * 301.71151 * 18 17 7 36 36 H 1.08993 * 109.46722 * 61.70982 * 18 17 7 37 37 H 1.07998 * 126.03932 * 179.76604 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2786 2.1170 1.0580 5 6 2.7143 3.3479 0.8793 6 6 3.0404 4.2715 2.0245 7 7 1.8150 4.9451 2.4747 8 6 2.1248 6.0224 3.4240 9 6 2.7640 7.1719 2.6884 10 1 2.9916 7.0801 1.6366 11 6 3.0582 8.3406 3.3580 12 7 2.7807 8.4525 4.6387 13 14 3.8499 9.7657 2.4460 14 1 2.9602 10.2006 1.3393 15 1 4.0616 10.8973 3.3840 16 1 5.1566 9.3324 1.8894 17 6 0.8703 3.9839 3.0590 18 6 -0.5363 4.5862 3.0580 19 6 -1.4758 3.6396 3.6807 20 7 -2.2013 2.9074 4.1613 21 6 2.8383 3.7116 -0.4006 22 16 2.3586 2.3434 -1.4020 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 1.8933 -0.5139 0.8900 28 1 3.7647 5.0166 1.6954 29 1 3.4614 3.6946 2.8480 30 1 1.2053 6.3623 3.9006 31 1 2.8119 5.6504 4.1841 32 1 2.9874 9.2748 5.1097 33 1 0.8733 3.0672 2.4694 34 1 1.1681 3.7583 4.0830 35 1 -0.5324 5.5188 3.6222 36 1 -0.8461 4.7837 2.0318 37 1 3.1742 4.6737 -0.7581 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000132851702.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:41:39 Heat of formation + Delta-G solvation = 48.715517 kcal Electronic energy + Delta-G solvation = -19139.362416 eV Core-core repulsion = 16235.757587 eV Total energy + Delta-G solvation = -2903.604829 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = -0.07 seconds Orbital eigenvalues (eV) -40.99902 -38.66931 -37.39564 -35.03046 -34.59356 -32.57158 -30.83289 -29.06307 -27.07521 -26.09217 -24.79582 -22.99581 -21.60719 -20.55201 -18.79178 -18.49580 -18.15226 -17.01827 -16.38034 -16.20621 -15.79088 -15.66558 -15.31462 -15.13289 -14.83268 -14.30516 -14.24745 -13.87421 -13.73342 -13.49117 -13.31397 -13.09311 -12.90891 -12.69943 -12.54279 -12.49547 -12.36173 -12.15939 -12.00290 -11.95248 -11.54661 -11.23301 -10.51866 -10.46309 -10.22057 -9.59947 -9.05245 -8.10976 -6.19118 -0.12526 0.53494 0.85030 1.49728 1.51065 1.58299 1.65478 1.74594 1.85784 2.48061 2.91369 3.14694 3.23910 3.66518 3.99077 4.12908 4.20416 4.23593 4.29252 4.36424 4.49403 4.63296 4.72171 4.80866 4.89307 4.93477 5.00208 5.05180 5.11398 5.22587 5.30794 5.32776 5.39731 5.74674 6.12063 6.31548 6.51984 6.59692 6.91681 6.95752 7.50002 8.99466 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.015045 B = 0.005412 C = 0.004203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.662309 B = 5172.854135 C = 6659.646513 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.045 4.045 3 C 0.038 3.962 4 N -0.496 5.496 5 C 0.065 3.935 6 C 0.141 3.859 7 N -0.523 5.523 8 C 0.203 3.797 9 C -0.514 4.514 10 H 0.068 0.932 11 C 0.006 3.994 12 N -0.934 5.934 13 Si 0.961 3.039 14 H -0.268 1.268 15 H -0.291 1.291 16 H -0.269 1.269 17 C 0.059 3.941 18 C -0.014 4.014 19 C 0.242 3.758 20 N -0.488 5.488 21 C -0.245 4.245 22 S 0.155 5.845 23 H 0.085 0.915 24 H 0.037 0.963 25 H 0.062 0.938 26 H 0.111 0.889 27 H 0.090 0.910 28 H 0.091 0.909 29 H 0.028 0.972 30 H 0.026 0.974 31 H -0.038 1.038 32 H 0.262 0.738 33 H 0.090 0.910 34 H 0.021 0.979 35 H 0.111 0.889 36 H 0.131 0.869 37 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.118 -13.377 -13.962 19.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.086 4.086 3 C -0.240 4.240 4 N -0.212 5.212 5 C -0.066 4.066 6 C 0.010 3.990 7 N -0.247 5.247 8 C 0.078 3.922 9 C -0.553 4.553 10 H 0.086 0.914 11 C -0.192 4.192 12 N -0.575 5.575 13 Si 0.786 3.214 14 H -0.193 1.193 15 H -0.217 1.217 16 H -0.194 1.194 17 C -0.071 4.071 18 C -0.054 4.054 19 C -0.075 4.075 20 N -0.167 5.167 21 C -0.385 4.385 22 S 0.410 5.590 23 H 0.104 0.896 24 H 0.057 0.943 25 H 0.081 0.919 26 H 0.129 0.871 27 H 0.108 0.892 28 H 0.109 0.891 29 H 0.046 0.954 30 H 0.044 0.956 31 H -0.020 1.020 32 H 0.071 0.929 33 H 0.108 0.892 34 H 0.039 0.961 35 H 0.129 0.871 36 H 0.149 0.851 37 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -2.551 -14.559 -14.075 20.411 hybrid contribution 1.356 1.647 1.555 2.640 sum -1.195 -12.912 -12.520 18.025 Atomic orbital electron populations 1.21742 0.93234 1.03383 1.01807 1.20354 0.96829 0.86189 1.05232 1.27539 1.02542 1.02693 0.91181 1.66077 1.15763 1.06288 1.33068 1.20072 1.01124 0.90791 0.94617 1.20392 0.92504 0.93482 0.92586 1.61986 1.12105 1.10369 1.40247 1.19537 0.94978 0.88441 0.89284 1.21413 1.38889 0.98370 0.96590 0.91367 1.25776 0.96614 1.01292 0.95501 1.70067 1.49457 1.28004 1.09979 0.85562 0.79173 0.78371 0.78261 1.19258 1.21704 1.19437 1.21988 0.91106 0.96029 0.97986 1.19278 0.89276 0.94174 1.02701 1.29484 0.92991 0.93058 0.91993 1.81213 1.12278 1.11734 1.11444 1.27014 1.10815 1.04953 0.95676 1.83515 1.60054 1.04136 1.11281 0.89582 0.94340 0.91885 0.87102 0.89199 0.89123 0.95388 0.95585 1.01983 0.92940 0.89202 0.96071 0.87087 0.85077 0.79735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 9.89 71.98 0.71 -1.52 16 2 C -0.05 -0.73 6.52 29.85 0.19 -0.54 16 3 C 0.04 0.89 6.64 88.52 0.59 1.48 16 4 N -0.50 -14.78 8.88 -179.41 -1.59 -16.38 16 5 C 0.06 2.02 5.64 41.52 0.23 2.26 16 6 C 0.14 5.15 5.24 85.56 0.45 5.60 16 7 N -0.52 -20.34 4.37 -905.35 -3.96 -24.30 16 8 C 0.20 9.77 4.55 85.56 0.39 10.16 16 9 C -0.51 -26.48 8.53 25.60 0.22 -26.26 16 10 H 0.07 3.38 7.42 -2.91 -0.02 3.36 16 11 C 0.01 0.33 5.46 84.65 0.46 0.79 16 12 N -0.93 -53.41 13.29 21.45 0.28 -53.13 16 13 Si 0.96 41.77 29.54 68.60 2.03 43.80 16 14 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 15 H -0.29 -12.70 7.11 99.48 0.71 -12.00 16 16 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 17 C 0.06 2.01 4.80 86.31 0.41 2.43 16 18 C -0.01 -0.41 5.84 28.79 0.17 -0.24 16 19 C 0.24 7.51 15.44 89.42 1.38 8.90 16 20 N -0.49 -17.08 18.55 20.02 0.37 -16.70 16 21 C -0.24 -6.48 11.12 66.77 0.74 -5.74 16 22 S 0.16 3.12 23.18 -56.49 -1.31 1.81 16 23 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 24 H 0.04 0.79 8.14 -2.38 -0.02 0.77 16 25 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 28 H 0.09 3.46 6.97 -2.39 -0.02 3.44 16 29 H 0.03 1.08 8.12 -2.38 -0.02 1.06 16 30 H 0.03 1.32 6.53 -2.39 -0.02 1.30 16 31 H -0.04 -2.01 8.05 -2.39 -0.02 -2.03 16 32 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 33 H 0.09 3.01 5.63 -2.39 -0.01 3.00 16 34 H 0.02 0.77 8.00 -2.39 -0.02 0.75 16 35 H 0.11 3.44 6.72 -2.39 -0.02 3.42 16 36 H 0.13 3.35 8.14 -2.39 -0.02 3.33 16 37 H 0.19 4.50 8.06 -2.91 -0.02 4.48 16 Total: -1.00 -62.57 331.45 2.84 -59.72 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: 1.07 Total: 7.86 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: 5.95 Total: -2.69 kcal Atomic # 7 Polarization: -105.62 SS G_CDS: -4.89 Total: -110.51 kcal Atomic # 14 Polarization: 41.77 SS G_CDS: 2.03 Total: 43.80 kcal Atomic # 16 Polarization: 3.12 SS G_CDS: -1.31 Total: 1.81 kcal Total: -62.57 2.84 -59.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132851702.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.438 kcal (2) G-P(sol) polarization free energy of solvation -62.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.722 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = -0.07 seconds