Wall clock time and date at job start Tue Mar 31 2020 00:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47682 * 2 1 4 4 H 1.08997 * 109.46575 * 54.80657 * 3 2 1 5 5 C 1.50697 * 109.47274 * 174.80592 * 3 2 1 6 6 H 1.08004 * 119.99745 * 120.00035 * 5 3 2 7 7 C 1.37879 * 120.00398 * 300.00164 * 5 3 2 8 8 N 1.31514 * 119.99969 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00097 * 179.72334 * 7 5 3 10 10 H 1.48498 * 109.47094 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46957 * 120.00148 * 9 7 5 12 12 H 1.48503 * 109.47407 * 240.00076 * 9 7 5 13 13 N 1.46894 * 109.47112 * 294.81091 * 3 2 1 14 14 C 1.46896 * 110.99993 * 153.26065 * 13 3 2 15 15 H 1.09000 * 110.73038 * 329.68688 * 14 13 3 16 16 C 1.54348 * 110.82046 * 206.28534 * 14 13 3 17 17 C 1.51378 * 105.17240 * 215.41719 * 16 14 13 18 18 C 1.38507 * 130.37831 * 197.21034 * 17 16 14 19 19 C 1.38074 * 120.23503 * 179.97438 * 18 17 16 20 20 C 1.38372 * 119.91970 * 359.97438 * 19 18 17 21 21 Cl 1.73602 * 120.04548 * 180.02562 * 20 19 18 22 22 C 1.38222 * 119.90740 * 0.02562 * 20 19 18 23 23 C 1.38227 * 109.75030 * 17.19476 * 17 16 14 24 24 C 1.51366 * 109.75914 * 359.97438 * 23 17 16 25 25 H 1.08995 * 109.47280 * 185.98534 * 1 2 3 26 26 H 1.08999 * 109.47076 * 305.98884 * 1 2 3 27 27 H 1.09005 * 109.46898 * 65.98263 * 1 2 3 28 28 H 1.09006 * 109.47365 * 239.99765 * 2 1 3 29 29 H 1.08998 * 109.47057 * 120.00219 * 2 1 3 30 30 H 0.96992 * 120.00092 * 179.97438 * 8 7 5 31 31 H 1.00900 * 111.00360 * 29.30523 * 13 3 2 32 32 H 1.09000 * 110.30673 * 334.34617 * 16 14 13 33 33 H 1.09009 * 110.30335 * 96.39784 * 16 14 13 34 34 H 1.07997 * 119.88214 * 359.96043 * 18 17 16 35 35 H 1.08003 * 120.04210 * 180.02562 * 19 18 17 36 36 H 1.08003 * 119.89416 * 179.97438 * 22 20 19 37 37 H 1.09003 * 110.30518 * 223.88439 * 24 23 17 38 38 H 1.08999 * 110.30420 * 101.73394 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6028 1.9824 0.8398 5 6 3.5416 1.4443 0.1286 6 1 4.1494 1.8880 -0.6461 7 6 4.1395 0.8796 1.2353 8 7 3.3994 0.3389 2.1784 9 14 6.0009 0.8751 1.3909 10 1 6.5987 1.5346 0.2023 11 1 6.3969 1.6130 2.6173 12 1 6.4871 -0.5255 1.4773 13 7 1.6555 2.0979 -1.2571 14 6 1.5361 3.5510 -1.0781 15 1 1.2276 3.7904 -0.0605 16 6 0.5526 4.1513 -2.1051 17 6 1.1242 5.5087 -2.4546 18 6 0.5305 6.6032 -3.0611 19 6 1.2585 7.7554 -3.2825 20 6 2.5859 7.8178 -2.8968 21 17 3.5042 9.2649 -3.1729 22 6 3.1798 6.7262 -2.2914 23 6 2.4504 5.5702 -2.0697 24 6 2.8603 4.2587 -1.4348 25 1 -0.3633 -1.0220 0.1072 26 1 -0.3633 0.6039 0.8315 27 1 -0.3633 0.4183 -0.9387 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8200 -0.0587 2.9567 31 1 0.7997 1.7070 -1.6217 32 1 0.5024 3.5218 -2.9935 33 1 -0.4377 4.2590 -1.6622 34 1 -0.5056 6.5553 -3.3622 35 1 0.7923 8.6071 -3.7553 36 1 4.2160 6.7750 -1.9908 37 1 3.4465 4.4414 -0.5342 38 1 3.4309 3.6577 -2.1429 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134850805.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:46 Heat of formation + Delta-G solvation = 6.639749 kcal Electronic energy + Delta-G solvation = -19266.280314 eV Core-core repulsion = 16326.514485 eV Total energy + Delta-G solvation = -2939.765829 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 2.36 seconds Orbital eigenvalues (eV) -40.04391 -37.19234 -36.30281 -34.49022 -32.00301 -31.37580 -30.57885 -27.60260 -27.09586 -25.91764 -22.92667 -21.99607 -20.96058 -20.05379 -19.55556 -16.63715 -16.23562 -15.73070 -15.23980 -15.17365 -14.52028 -13.89262 -13.62731 -13.46806 -13.24521 -12.97156 -12.70715 -12.42278 -12.23300 -11.74949 -11.58235 -11.41746 -11.20984 -11.12020 -10.87215 -10.81876 -10.65213 -10.62272 -10.43744 -9.92924 -9.68609 -9.60380 -9.07737 -8.78892 -8.36605 -8.29659 -7.34046 -5.98001 -4.01521 1.19971 1.34783 2.10655 3.30500 3.39126 3.43460 3.66113 4.43305 4.55085 4.73694 4.93430 5.16077 5.23244 5.31956 5.37151 5.42750 5.65735 5.74929 5.88771 6.02337 6.11697 6.13321 6.14289 6.23770 6.30355 6.34629 6.38179 6.55306 6.66444 6.77463 6.81473 6.90564 7.04786 7.15060 7.46873 7.75446 7.90950 8.26720 8.37028 8.70766 9.06424 9.63560 11.07661 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.019038 B = 0.004513 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.427415 B = 6202.814568 C = 7524.415464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.127 4.127 3 C 0.218 3.782 4 H 0.004 0.996 5 C -0.489 4.489 6 H 0.064 0.936 7 C 0.055 3.945 8 N -0.897 5.897 9 Si 0.891 3.109 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.286 1.286 13 N -0.678 5.678 14 C 0.101 3.899 15 H 0.053 0.947 16 C -0.089 4.089 17 C -0.088 4.088 18 C -0.099 4.099 19 C -0.120 4.120 20 C -0.036 4.036 21 Cl -0.081 7.081 22 C -0.103 4.103 23 C -0.069 4.069 24 C -0.067 4.067 25 H 0.037 0.963 26 H 0.042 0.958 27 H 0.035 0.965 28 H 0.041 0.959 29 H 0.100 0.900 30 H 0.258 0.742 31 H 0.321 0.679 32 H 0.088 0.912 33 H 0.070 0.930 34 H 0.126 0.874 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.079 0.921 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.710 11.404 -9.008 15.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.166 4.166 3 C 0.110 3.890 4 H 0.022 0.978 5 C -0.528 4.528 6 H 0.082 0.918 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.720 3.280 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.212 1.212 13 N -0.309 5.309 14 C -0.009 4.009 15 H 0.071 0.929 16 C -0.127 4.127 17 C -0.088 4.088 18 C -0.117 4.117 19 C -0.139 4.139 20 C -0.062 4.062 21 Cl -0.052 7.052 22 C -0.122 4.122 23 C -0.070 4.070 24 C -0.105 4.105 25 H 0.056 0.944 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.118 0.882 30 H 0.068 0.932 31 H 0.140 0.860 32 H 0.106 0.894 33 H 0.089 0.911 34 H 0.144 0.856 35 H 0.148 0.852 36 H 0.148 0.852 37 H 0.097 0.903 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -4.958 11.451 -9.086 15.436 hybrid contribution 0.287 0.232 0.661 0.757 sum -4.670 11.684 -8.425 15.143 Atomic orbital electron populations 1.21884 0.99627 0.99765 0.99491 1.21793 0.91193 1.00444 1.03157 1.19275 0.95648 0.89949 0.84098 0.97833 1.21254 0.91112 1.36142 1.04315 0.91824 1.24951 0.97969 0.95714 0.95913 1.69873 1.34601 1.39501 1.09702 0.86544 0.86006 0.77612 0.77871 1.19751 1.21289 1.21180 1.60765 1.36567 1.00647 1.32963 1.22029 0.92765 0.90014 0.96131 0.92929 1.21394 0.98990 0.92061 1.00235 1.20730 0.95078 0.95539 0.97487 1.20531 0.99828 0.91867 0.99458 1.20813 0.92356 0.98804 1.01919 1.20692 0.92892 0.88630 1.04018 1.98350 1.74300 1.37314 1.95217 1.20516 1.00597 0.91246 0.99848 1.20909 0.94064 0.95214 0.96768 1.21173 0.98894 0.89752 1.00687 0.94382 0.93902 0.94627 0.94011 0.88221 0.93174 0.86038 0.89359 0.91117 0.85597 0.85250 0.85212 0.90250 0.88599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 9.64 37.16 0.36 -2.40 16 2 C -0.13 -2.87 5.35 -26.73 -0.14 -3.01 16 3 C 0.22 5.11 2.03 -68.87 -0.14 4.97 16 4 H 0.00 0.11 7.39 -51.93 -0.38 -0.28 16 5 C -0.49 -12.82 8.35 -34.44 -0.29 -13.11 16 6 H 0.06 1.69 7.47 -52.48 -0.39 1.30 16 7 C 0.05 1.47 5.29 -17.82 -0.09 1.37 16 8 N -0.90 -24.89 11.29 55.43 0.63 -24.26 16 9 Si 0.89 21.05 29.54 -169.99 -5.02 16.02 16 10 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 11 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 12 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 13 N -0.68 -13.23 6.14 -99.50 -0.61 -13.84 16 14 C 0.10 1.77 3.39 -66.32 -0.22 1.54 16 15 H 0.05 1.00 7.40 -51.93 -0.38 0.62 16 16 C -0.09 -1.24 6.21 -26.84 -0.17 -1.41 16 17 C -0.09 -1.23 6.14 -104.19 -0.64 -1.86 16 18 C -0.10 -1.18 10.04 -39.54 -0.40 -1.57 16 19 C -0.12 -1.41 9.83 -39.59 -0.39 -1.80 16 20 C -0.04 -0.46 6.32 -39.54 -0.25 -0.71 16 21 Cl -0.08 -0.94 28.96 -51.86 -1.50 -2.44 16 22 C -0.10 -1.46 9.82 -39.50 -0.39 -1.84 16 23 C -0.07 -1.05 6.14 -104.21 -0.64 -1.69 16 24 C -0.07 -1.17 5.72 -26.86 -0.15 -1.32 16 25 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 27 H 0.03 0.57 6.65 -51.93 -0.35 0.23 16 28 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.10 2.56 5.95 -51.93 -0.31 2.25 16 30 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 31 H 0.32 5.66 6.19 -39.29 -0.24 5.42 16 32 H 0.09 1.18 8.01 -51.93 -0.42 0.77 16 33 H 0.07 0.88 8.14 -51.92 -0.42 0.46 16 34 H 0.13 1.19 8.06 -52.49 -0.42 0.76 16 35 H 0.13 1.22 8.06 -52.48 -0.42 0.80 16 36 H 0.13 1.71 8.06 -52.48 -0.42 1.28 16 37 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 38 H 0.10 1.77 8.08 -51.93 -0.42 1.35 16 LS Contribution 321.83 15.07 4.85 4.85 Total: -1.00 -26.94 321.83 -10.62 -37.56 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -5.41 Total: 4.95 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: -3.55 Total: -22.84 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: 0.02 Total: -38.10 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Atomic # 17 Polarization: -0.94 SS G_CDS: -1.50 Total: -2.44 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -26.94 -10.62 -37.56 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134850805.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.204 kcal (2) G-P(sol) polarization free energy of solvation -26.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.640 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.36 seconds