Wall clock time and date at job start Tue Mar 31 2020 00:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53005 * 109.47682 * 2 1 4 4 H 1.08997 * 109.46575 * 54.80657 * 3 2 1 5 5 C 1.50697 * 109.47274 * 174.80592 * 3 2 1 6 6 H 1.08004 * 119.99745 * 120.00035 * 5 3 2 7 7 C 1.37879 * 120.00398 * 300.00164 * 5 3 2 8 8 N 1.31514 * 119.99969 * 0.02562 * 7 5 3 9 9 Si 1.86796 * 120.00097 * 179.72334 * 7 5 3 10 10 H 1.48498 * 109.47094 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46957 * 120.00148 * 9 7 5 12 12 H 1.48503 * 109.47407 * 240.00076 * 9 7 5 13 13 N 1.46894 * 109.47112 * 294.81091 * 3 2 1 14 14 C 1.46896 * 110.99993 * 153.26065 * 13 3 2 15 15 H 1.09000 * 110.73038 * 329.68688 * 14 13 3 16 16 C 1.54348 * 110.82046 * 206.28534 * 14 13 3 17 17 C 1.51378 * 105.17240 * 215.41719 * 16 14 13 18 18 C 1.38507 * 130.37831 * 197.21034 * 17 16 14 19 19 C 1.38074 * 120.23503 * 179.97438 * 18 17 16 20 20 C 1.38372 * 119.91970 * 359.97438 * 19 18 17 21 21 Cl 1.73602 * 120.04548 * 180.02562 * 20 19 18 22 22 C 1.38222 * 119.90740 * 0.02562 * 20 19 18 23 23 C 1.38227 * 109.75030 * 17.19476 * 17 16 14 24 24 C 1.51366 * 109.75914 * 359.97438 * 23 17 16 25 25 H 1.08995 * 109.47280 * 185.98534 * 1 2 3 26 26 H 1.08999 * 109.47076 * 305.98884 * 1 2 3 27 27 H 1.09005 * 109.46898 * 65.98263 * 1 2 3 28 28 H 1.09006 * 109.47365 * 239.99765 * 2 1 3 29 29 H 1.08998 * 109.47057 * 120.00219 * 2 1 3 30 30 H 0.96992 * 120.00092 * 179.97438 * 8 7 5 31 31 H 1.00900 * 111.00360 * 29.30523 * 13 3 2 32 32 H 1.09000 * 110.30673 * 334.34617 * 16 14 13 33 33 H 1.09009 * 110.30335 * 96.39784 * 16 14 13 34 34 H 1.07997 * 119.88214 * 359.96043 * 18 17 16 35 35 H 1.08003 * 120.04210 * 180.02562 * 19 18 17 36 36 H 1.08003 * 119.89416 * 179.97438 * 22 20 19 37 37 H 1.09003 * 110.30518 * 223.88439 * 24 23 17 38 38 H 1.08999 * 110.30420 * 101.73394 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6028 1.9824 0.8398 5 6 3.5416 1.4443 0.1286 6 1 4.1494 1.8880 -0.6461 7 6 4.1395 0.8796 1.2353 8 7 3.3994 0.3389 2.1784 9 14 6.0009 0.8751 1.3909 10 1 6.5987 1.5346 0.2023 11 1 6.3969 1.6130 2.6173 12 1 6.4871 -0.5255 1.4773 13 7 1.6555 2.0979 -1.2571 14 6 1.5361 3.5510 -1.0781 15 1 1.2276 3.7904 -0.0605 16 6 0.5526 4.1513 -2.1051 17 6 1.1242 5.5087 -2.4546 18 6 0.5305 6.6032 -3.0611 19 6 1.2585 7.7554 -3.2825 20 6 2.5859 7.8178 -2.8968 21 17 3.5042 9.2649 -3.1729 22 6 3.1798 6.7262 -2.2914 23 6 2.4504 5.5702 -2.0697 24 6 2.8603 4.2587 -1.4348 25 1 -0.3633 -1.0220 0.1072 26 1 -0.3633 0.6039 0.8315 27 1 -0.3633 0.4183 -0.9387 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 3.8200 -0.0587 2.9567 31 1 0.7997 1.7070 -1.6217 32 1 0.5024 3.5218 -2.9935 33 1 -0.4377 4.2590 -1.6622 34 1 -0.5056 6.5553 -3.3622 35 1 0.7923 8.6071 -3.7553 36 1 4.2160 6.7750 -1.9908 37 1 3.4465 4.4414 -0.5342 38 1 3.4309 3.6577 -2.1429 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134850805.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:43 Heat of formation + Delta-G solvation = -6.654367 kcal Electronic energy + Delta-G solvation = -19266.856790 eV Core-core repulsion = 16326.514485 eV Total energy + Delta-G solvation = -2940.342305 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.16744 -38.53446 -37.49619 -35.91691 -33.91534 -32.44689 -32.04939 -29.10368 -28.33446 -27.55848 -24.66556 -23.15550 -22.07435 -21.41265 -21.32322 -18.41206 -17.46684 -16.97264 -16.79120 -16.50403 -16.11637 -15.43023 -14.96393 -14.73622 -14.52057 -14.27394 -14.09593 -13.78253 -13.69232 -13.18651 -13.00503 -12.98100 -12.68163 -12.56436 -12.41844 -12.23781 -12.14264 -11.81738 -11.77907 -11.65438 -11.48242 -11.28845 -10.94488 -10.39993 -9.82836 -9.37244 -9.03682 -8.04183 -6.13977 0.17204 0.32475 1.12977 1.39222 1.42580 1.52939 2.44976 2.62991 3.21502 3.43918 3.47069 3.82111 3.98375 4.10355 4.23812 4.34654 4.48183 4.54501 4.60356 4.61800 4.74766 4.79984 4.88674 4.90923 5.05277 5.10360 5.18468 5.21533 5.24225 5.27247 5.34220 5.41809 5.65876 5.67093 5.79904 5.84968 5.95117 6.40570 6.55098 6.99935 7.04184 7.54633 8.99427 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.019038 B = 0.004513 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.427415 B = 6202.814568 C = 7524.415464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.123 4.123 3 C 0.225 3.775 4 H -0.030 1.030 5 C -0.500 4.500 6 H 0.053 0.947 7 C 0.010 3.990 8 N -0.921 5.921 9 Si 0.946 3.054 10 H -0.271 1.271 11 H -0.285 1.285 12 H -0.282 1.282 13 N -0.675 5.675 14 C 0.097 3.903 15 H 0.031 0.969 16 C -0.076 4.076 17 C -0.094 4.094 18 C -0.090 4.090 19 C -0.112 4.112 20 C -0.043 4.043 21 Cl -0.071 7.071 22 C -0.115 4.115 23 C -0.091 4.091 24 C -0.062 4.062 25 H 0.055 0.945 26 H 0.035 0.965 27 H 0.062 0.938 28 H 0.037 0.963 29 H 0.065 0.935 30 H 0.258 0.742 31 H 0.335 0.665 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.161 0.839 35 H 0.159 0.841 36 H 0.128 0.872 37 H 0.052 0.948 38 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.211 12.695 -10.807 18.164 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.162 4.162 3 C 0.117 3.883 4 H -0.012 1.012 5 C -0.539 4.539 6 H 0.072 0.928 7 C -0.188 4.188 8 N -0.562 5.562 9 Si 0.773 3.227 10 H -0.195 1.195 11 H -0.211 1.211 12 H -0.208 1.208 13 N -0.307 5.307 14 C -0.014 4.014 15 H 0.049 0.951 16 C -0.113 4.113 17 C -0.094 4.094 18 C -0.108 4.108 19 C -0.130 4.130 20 C -0.069 4.069 21 Cl -0.042 7.042 22 C -0.133 4.133 23 C -0.092 4.092 24 C -0.100 4.100 25 H 0.074 0.926 26 H 0.054 0.946 27 H 0.081 0.919 28 H 0.056 0.944 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.154 0.846 32 H 0.117 0.883 33 H 0.111 0.889 34 H 0.178 0.822 35 H 0.177 0.823 36 H 0.146 0.854 37 H 0.070 0.930 38 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -6.464 12.750 -10.900 17.977 hybrid contribution 0.770 -0.084 1.192 1.421 sum -5.694 12.666 -9.709 16.944 Atomic orbital electron populations 1.21750 0.96157 1.01074 1.00674 1.21617 0.94326 0.99030 1.01228 1.19016 0.94086 0.90615 0.84603 1.01213 1.21525 0.92796 1.35586 1.03990 0.92850 1.25609 1.01651 0.95702 0.95843 1.69998 1.35919 1.40227 1.10051 0.85676 0.81692 0.77581 0.77709 1.19512 1.21119 1.20769 1.60608 1.37530 1.01872 1.30738 1.22009 0.94179 0.88790 0.96402 0.95082 1.21248 0.98651 0.92015 0.99361 1.20810 0.94361 0.96201 0.98040 1.20865 1.01288 0.90699 0.97972 1.21204 0.91618 0.99607 1.00577 1.20817 0.93679 0.88583 1.03824 1.98354 1.74261 1.36466 1.95103 1.20571 1.00731 0.91579 1.00451 1.20693 0.95291 0.94658 0.98560 1.20958 0.98425 0.91336 0.99266 0.92624 0.94564 0.91922 0.94377 0.91605 0.93284 0.84559 0.88261 0.88935 0.82192 0.82337 0.85428 0.92973 0.90412 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.94 9.64 71.98 0.69 -4.25 16 2 C -0.12 -5.62 5.35 30.59 0.16 -5.46 16 3 C 0.23 10.89 2.03 44.17 0.09 10.98 16 4 H -0.03 -1.61 7.39 -2.39 -0.02 -1.63 16 5 C -0.50 -27.13 8.35 25.60 0.21 -26.92 16 6 H 0.05 2.94 7.47 -2.91 -0.02 2.92 16 7 C 0.01 0.53 5.29 84.66 0.45 0.98 16 8 N -0.92 -52.70 11.29 21.45 0.24 -52.46 16 9 Si 0.95 44.23 29.54 68.60 2.03 46.26 16 10 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 11 H -0.28 -13.17 7.11 99.48 0.71 -12.47 16 12 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 13 N -0.68 -26.55 6.14 -468.70 -2.88 -29.43 16 14 C 0.10 3.42 3.39 45.82 0.16 3.58 16 15 H 0.03 1.24 7.40 -2.39 -0.02 1.22 16 16 C -0.08 -1.95 6.21 30.52 0.19 -1.76 16 17 C -0.09 -2.42 6.14 -19.59 -0.12 -2.54 16 18 C -0.09 -1.81 10.04 22.30 0.22 -1.59 16 19 C -0.11 -2.22 9.83 22.26 0.22 -2.00 16 20 C -0.04 -1.01 6.32 22.30 0.14 -0.87 16 21 Cl -0.07 -1.52 28.96 -2.72 -0.08 -1.60 16 22 C -0.11 -3.19 9.82 22.32 0.22 -2.97 16 23 C -0.09 -2.77 6.14 -19.60 -0.12 -2.89 16 24 C -0.06 -2.24 5.72 30.51 0.17 -2.07 16 25 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.06 1.87 6.65 -2.38 -0.02 1.85 16 28 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 29 H 0.07 3.47 5.95 -2.39 -0.01 3.46 16 30 H 0.26 14.15 8.31 -92.71 -0.77 13.38 16 31 H 0.33 11.38 6.19 -89.69 -0.55 10.83 16 32 H 0.10 2.38 8.01 -2.39 -0.02 2.36 16 33 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 34 H 0.16 2.14 8.06 -2.91 -0.02 2.12 16 35 H 0.16 2.24 8.06 -2.91 -0.02 2.21 16 36 H 0.13 3.45 8.06 -2.91 -0.02 3.43 16 37 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.08 3.02 8.08 -2.39 -0.02 3.00 16 Total: -1.00 -59.95 321.83 2.51 -57.45 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: 0.50 Total: 17.55 kcal Atomic # 6 Polarization: -40.46 SS G_CDS: 2.69 Total: -37.77 kcal Atomic # 7 Polarization: -79.25 SS G_CDS: -2.63 Total: -81.89 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Atomic # 17 Polarization: -1.52 SS G_CDS: -0.08 Total: -1.60 kcal Total: -59.95 2.51 -57.45 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134850805.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.792 kcal (2) G-P(sol) polarization free energy of solvation -59.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds