Wall clock time and date at job start Tue Mar 31 2020 00:54:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47002 * 2 1 4 4 H 1.09001 * 109.47530 * 304.31704 * 3 2 1 5 5 C 1.50703 * 109.47154 * 184.31839 * 3 2 1 6 6 H 1.08004 * 119.99746 * 239.99941 * 5 3 2 7 7 C 1.37879 * 120.00297 * 59.99977 * 5 3 2 8 8 N 1.31522 * 119.99446 * 0.02562 * 7 5 3 9 9 Si 1.86792 * 120.00260 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.46897 * 90.00061 * 9 7 5 11 11 H 1.48498 * 109.47303 * 209.99661 * 9 7 5 12 12 H 1.48498 * 109.47247 * 330.00019 * 9 7 5 13 13 N 1.46894 * 109.47490 * 64.31748 * 3 2 1 14 14 C 1.46899 * 111.00634 * 206.87583 * 13 3 2 15 15 H 1.09007 * 110.72326 * 30.38211 * 14 13 3 16 16 C 1.54344 * 110.98851 * 266.86428 * 14 13 3 17 17 C 1.51385 * 105.16628 * 215.33601 * 16 14 13 18 18 C 1.38508 * 130.37061 * 197.20887 * 17 16 14 19 19 C 1.38084 * 120.22931 * 180.02562 * 18 17 16 20 20 C 1.38369 * 119.92107 * 359.97438 * 19 18 17 21 21 Cl 1.73600 * 120.04275 * 180.02562 * 20 19 18 22 22 C 1.38215 * 119.90624 * 359.97438 * 20 19 18 23 23 C 1.38217 * 109.75488 * 17.19676 * 17 16 14 24 24 C 1.51372 * 109.75902 * 359.97438 * 23 17 16 25 25 H 1.08999 * 109.47189 * 54.94899 * 1 2 3 26 26 H 1.09003 * 109.47022 * 174.94903 * 1 2 3 27 27 H 1.08998 * 109.47307 * 294.95161 * 1 2 3 28 28 H 1.08999 * 109.47076 * 240.00123 * 2 1 3 29 29 H 1.09002 * 109.47626 * 119.99907 * 2 1 3 30 30 H 0.96998 * 119.99594 * 180.02562 * 8 7 5 31 31 H 1.00902 * 111.00370 * 82.91393 * 13 3 2 32 32 H 1.08993 * 110.30503 * 334.26336 * 16 14 13 33 33 H 1.09002 * 110.30503 * 96.42242 * 16 14 13 34 34 H 1.07992 * 119.88507 * 0.02562 * 18 17 16 35 35 H 1.07999 * 120.03840 * 179.97438 * 19 18 17 36 36 H 1.08008 * 119.89484 * 179.97438 * 22 20 19 37 37 H 1.09000 * 110.30486 * 223.88719 * 24 23 17 38 38 H 1.09001 * 110.38861 * 101.77705 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6149 1.9782 -0.8488 5 6 3.5432 1.4439 -0.1070 6 1 4.1397 1.8916 0.6742 7 6 4.1570 0.8736 -1.2020 8 7 3.4304 0.3289 -2.1535 9 14 6.0202 0.8760 -1.3350 10 1 6.5631 -0.3530 -0.7023 11 1 6.4143 0.9113 -2.7663 12 1 6.5644 2.0713 -0.6420 13 7 1.6373 2.1043 1.2481 14 6 1.5173 3.5561 1.0593 15 1 1.2206 3.7889 0.0365 16 6 2.8350 4.2720 1.4247 17 6 2.4127 5.5871 2.0442 18 6 3.1354 6.7479 2.2649 19 6 2.5321 7.8407 2.8554 20 6 1.2010 7.7769 3.2275 21 17 0.4392 9.1492 3.9694 22 6 0.4784 6.6196 3.0068 23 6 1.0828 5.5229 2.4155 24 6 0.5203 4.1606 2.0704 25 1 -0.3633 0.5902 -0.8413 26 1 -0.3633 -1.0237 -0.0905 27 1 -0.3634 0.4335 0.9317 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8622 -0.0726 -2.9237 31 1 2.2801 1.8887 1.9954 32 1 3.4005 3.6794 2.1438 33 1 3.4299 4.4498 0.5288 34 1 4.1742 6.7984 1.9743 35 1 3.0987 8.7441 3.0264 36 1 -0.5606 6.5699 3.2977 37 1 -0.4651 4.2624 1.6158 38 1 0.4621 3.5368 2.9623 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134850825.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:48 Heat of formation + Delta-G solvation = 2.270194 kcal Electronic energy + Delta-G solvation = -19254.598971 eV Core-core repulsion = 16314.643664 eV Total energy + Delta-G solvation = -2939.955307 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -40.06798 -37.19589 -36.27128 -34.44470 -31.92943 -31.39010 -30.61623 -27.73954 -26.91675 -25.74820 -22.86056 -21.99847 -20.90247 -20.24410 -19.56661 -16.74814 -16.42388 -15.74149 -15.18720 -15.02110 -14.53575 -13.69869 -13.55335 -13.50859 -13.01522 -12.96563 -12.86188 -12.46448 -11.98179 -11.59853 -11.56351 -11.31276 -11.25617 -11.07306 -10.97750 -10.91458 -10.69990 -10.67014 -10.45308 -10.19101 -9.62250 -9.50851 -9.07774 -8.83120 -8.42570 -8.30693 -7.36917 -6.04175 -4.16907 1.20333 1.31656 2.07727 3.23388 3.31332 3.32684 3.65007 4.35126 4.55061 4.79253 4.92367 5.15142 5.24490 5.30100 5.37023 5.45916 5.66807 5.78722 5.87222 6.07993 6.16494 6.19947 6.23763 6.33949 6.37102 6.46671 6.51245 6.59211 6.69315 6.74667 6.87796 7.09579 7.14363 7.39632 7.54836 7.73656 8.04153 8.08221 8.27609 8.58526 8.95018 9.50995 10.96326 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.023737 B = 0.004113 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.313479 B = 6805.465442 C = 7824.809258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.107 4.107 3 C 0.215 3.785 4 H 0.033 0.967 5 C -0.544 4.544 6 H 0.055 0.945 7 C 0.068 3.932 8 N -0.884 5.884 9 Si 0.887 3.113 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.678 5.678 14 C 0.105 3.895 15 H 0.082 0.918 16 C -0.105 4.105 17 C -0.080 4.080 18 C -0.100 4.100 19 C -0.116 4.116 20 C -0.040 4.040 21 Cl -0.082 7.082 22 C -0.102 4.102 23 C -0.080 4.080 24 C -0.075 4.075 25 H 0.036 0.964 26 H 0.024 0.976 27 H 0.046 0.954 28 H 0.090 0.910 29 H 0.030 0.970 30 H 0.261 0.739 31 H 0.331 0.669 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.128 0.872 35 H 0.130 0.870 36 H 0.128 0.872 37 H 0.073 0.927 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.096 11.604 8.895 15.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.146 4.146 3 C 0.107 3.893 4 H 0.051 0.949 5 C -0.583 4.583 6 H 0.073 0.927 7 C -0.135 4.135 8 N -0.522 5.522 9 Si 0.715 3.285 10 H -0.207 1.207 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.307 5.307 14 C -0.007 4.007 15 H 0.100 0.900 16 C -0.144 4.144 17 C -0.081 4.081 18 C -0.118 4.118 19 C -0.134 4.134 20 C -0.067 4.067 21 Cl -0.053 7.053 22 C -0.121 4.121 23 C -0.080 4.080 24 C -0.113 4.113 25 H 0.055 0.945 26 H 0.043 0.957 27 H 0.065 0.935 28 H 0.108 0.892 29 H 0.049 0.951 30 H 0.071 0.929 31 H 0.149 0.851 32 H 0.101 0.899 33 H 0.100 0.900 34 H 0.145 0.855 35 H 0.148 0.852 36 H 0.146 0.854 37 H 0.092 0.908 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -4.837 11.478 8.662 15.172 hybrid contribution 2.060 0.487 -0.124 2.121 sum -2.777 11.966 8.538 14.959 Atomic orbital electron populations 1.21692 0.98996 0.98312 1.00368 1.21510 0.92085 0.99250 1.01720 1.19235 0.92895 0.91193 0.85932 0.94929 1.21865 0.92538 1.38099 1.05833 0.92664 1.24925 0.97826 0.95003 0.95708 1.69877 1.34857 1.37963 1.09538 0.86689 0.86213 0.78397 0.77236 1.20676 1.21249 1.20077 1.60868 1.54478 1.05038 1.10278 1.22077 0.91455 0.89285 0.97903 0.89956 1.21948 1.00309 0.91562 1.00565 1.20983 0.94414 0.95661 0.96999 1.20631 1.00113 0.91844 0.99243 1.20857 0.93004 0.99360 1.00211 1.20658 0.93815 0.89370 1.02845 1.98347 1.81975 1.43577 1.81387 1.20443 1.00119 0.91093 1.00423 1.20726 0.94911 0.95501 0.96886 1.21197 0.99425 0.90281 1.00404 0.94461 0.95695 0.93463 0.89171 0.95076 0.92870 0.85107 0.89941 0.90030 0.85456 0.85246 0.85419 0.90804 0.89486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 9.73 37.16 0.36 -2.33 16 2 C -0.11 -2.45 5.45 -26.73 -0.15 -2.59 16 3 C 0.22 4.95 1.99 -68.87 -0.14 4.81 16 4 H 0.03 0.84 7.39 -51.93 -0.38 0.46 16 5 C -0.54 -13.66 8.12 -34.44 -0.28 -13.94 16 6 H 0.06 1.36 7.39 -52.48 -0.39 0.97 16 7 C 0.07 1.78 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -24.10 11.30 55.43 0.63 -23.48 16 9 Si 0.89 20.38 29.54 -169.99 -5.02 15.35 16 10 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 12 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 13 N -0.68 -12.92 5.63 -99.49 -0.56 -13.48 16 14 C 0.10 1.78 3.37 -66.32 -0.22 1.55 16 15 H 0.08 1.53 7.40 -51.92 -0.38 1.15 16 16 C -0.11 -1.70 5.71 -26.84 -0.15 -1.86 16 17 C -0.08 -1.17 6.14 -104.19 -0.64 -1.81 16 18 C -0.10 -1.30 10.04 -39.54 -0.40 -1.69 16 19 C -0.12 -1.39 9.83 -39.59 -0.39 -1.78 16 20 C -0.04 -0.50 6.32 -39.54 -0.25 -0.75 16 21 Cl -0.08 -0.91 28.96 -51.86 -1.50 -2.41 16 22 C -0.10 -1.31 9.82 -39.50 -0.39 -1.70 16 23 C -0.08 -1.12 6.14 -104.21 -0.64 -1.76 16 24 C -0.08 -1.08 6.49 -26.86 -0.17 -1.25 16 25 H 0.04 0.74 8.14 -51.93 -0.42 0.31 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.88 7.88 -51.93 -0.41 0.47 16 28 H 0.09 2.32 5.97 -51.93 -0.31 2.01 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 31 H 0.33 6.26 7.72 -39.29 -0.30 5.95 16 32 H 0.08 1.35 7.56 -51.93 -0.39 0.96 16 33 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 34 H 0.13 1.44 8.06 -52.49 -0.42 1.02 16 35 H 0.13 1.29 8.06 -52.49 -0.42 0.86 16 36 H 0.13 1.44 8.06 -52.48 -0.42 1.01 16 37 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 38 H 0.09 1.22 8.08 -51.93 -0.42 0.80 16 LS Contribution 323.76 15.07 4.88 4.88 Total: -1.00 -25.68 323.76 -10.63 -36.31 By element: Atomic # 1 Polarization: 11.74 SS G_CDS: -5.51 Total: 6.24 kcal Atomic # 6 Polarization: -19.86 SS G_CDS: -3.55 Total: -23.41 kcal Atomic # 7 Polarization: -37.02 SS G_CDS: 0.07 Total: -36.96 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 17 Polarization: -0.91 SS G_CDS: -1.50 Total: -2.41 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -25.68 -10.63 -36.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134850825.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.580 kcal (2) G-P(sol) polarization free energy of solvation -25.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds