Wall clock time and date at job start Tue Mar 31 2020 00:54:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47002 * 2 1 4 4 H 1.09001 * 109.47530 * 304.31704 * 3 2 1 5 5 C 1.50703 * 109.47154 * 184.31839 * 3 2 1 6 6 H 1.08004 * 119.99746 * 239.99941 * 5 3 2 7 7 C 1.37879 * 120.00297 * 59.99977 * 5 3 2 8 8 N 1.31522 * 119.99446 * 0.02562 * 7 5 3 9 9 Si 1.86792 * 120.00260 * 179.97438 * 7 5 3 10 10 H 1.48507 * 109.46897 * 90.00061 * 9 7 5 11 11 H 1.48498 * 109.47303 * 209.99661 * 9 7 5 12 12 H 1.48498 * 109.47247 * 330.00019 * 9 7 5 13 13 N 1.46894 * 109.47490 * 64.31748 * 3 2 1 14 14 C 1.46899 * 111.00634 * 206.87583 * 13 3 2 15 15 H 1.09007 * 110.72326 * 30.38211 * 14 13 3 16 16 C 1.54344 * 110.98851 * 266.86428 * 14 13 3 17 17 C 1.51385 * 105.16628 * 215.33601 * 16 14 13 18 18 C 1.38508 * 130.37061 * 197.20887 * 17 16 14 19 19 C 1.38084 * 120.22931 * 180.02562 * 18 17 16 20 20 C 1.38369 * 119.92107 * 359.97438 * 19 18 17 21 21 Cl 1.73600 * 120.04275 * 180.02562 * 20 19 18 22 22 C 1.38215 * 119.90624 * 359.97438 * 20 19 18 23 23 C 1.38217 * 109.75488 * 17.19676 * 17 16 14 24 24 C 1.51372 * 109.75902 * 359.97438 * 23 17 16 25 25 H 1.08999 * 109.47189 * 54.94899 * 1 2 3 26 26 H 1.09003 * 109.47022 * 174.94903 * 1 2 3 27 27 H 1.08998 * 109.47307 * 294.95161 * 1 2 3 28 28 H 1.08999 * 109.47076 * 240.00123 * 2 1 3 29 29 H 1.09002 * 109.47626 * 119.99907 * 2 1 3 30 30 H 0.96998 * 119.99594 * 180.02562 * 8 7 5 31 31 H 1.00902 * 111.00370 * 82.91393 * 13 3 2 32 32 H 1.08993 * 110.30503 * 334.26336 * 16 14 13 33 33 H 1.09002 * 110.30503 * 96.42242 * 16 14 13 34 34 H 1.07992 * 119.88507 * 0.02562 * 18 17 16 35 35 H 1.07999 * 120.03840 * 179.97438 * 19 18 17 36 36 H 1.08008 * 119.89484 * 179.97438 * 22 20 19 37 37 H 1.09000 * 110.30486 * 223.88719 * 24 23 17 38 38 H 1.09001 * 110.38861 * 101.77705 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6149 1.9782 -0.8488 5 6 3.5432 1.4439 -0.1070 6 1 4.1397 1.8916 0.6742 7 6 4.1570 0.8736 -1.2020 8 7 3.4304 0.3289 -2.1535 9 14 6.0202 0.8760 -1.3350 10 1 6.5631 -0.3530 -0.7023 11 1 6.4143 0.9113 -2.7663 12 1 6.5644 2.0713 -0.6420 13 7 1.6373 2.1043 1.2481 14 6 1.5173 3.5561 1.0593 15 1 1.2206 3.7889 0.0365 16 6 2.8350 4.2720 1.4247 17 6 2.4127 5.5871 2.0442 18 6 3.1354 6.7479 2.2649 19 6 2.5321 7.8407 2.8554 20 6 1.2010 7.7769 3.2275 21 17 0.4392 9.1492 3.9694 22 6 0.4784 6.6196 3.0068 23 6 1.0828 5.5229 2.4155 24 6 0.5203 4.1606 2.0704 25 1 -0.3633 0.5902 -0.8413 26 1 -0.3633 -1.0237 -0.0905 27 1 -0.3634 0.4335 0.9317 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.8622 -0.0726 -2.9237 31 1 2.2801 1.8887 1.9954 32 1 3.4005 3.6794 2.1438 33 1 3.4299 4.4498 0.5288 34 1 4.1742 6.7984 1.9743 35 1 3.0987 8.7441 3.0264 36 1 -0.5606 6.5699 3.2977 37 1 -0.4651 4.2624 1.6158 38 1 0.4621 3.5368 2.9623 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134850825.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:47 Heat of formation + Delta-G solvation = -9.252049 kcal Electronic energy + Delta-G solvation = -19255.098613 eV Core-core repulsion = 16314.643664 eV Total energy + Delta-G solvation = -2940.454949 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.18469 -38.48582 -37.45000 -35.90259 -33.77543 -32.48275 -32.10459 -29.16220 -28.11812 -27.43687 -24.59162 -23.16518 -21.96964 -21.63872 -21.31561 -18.58995 -17.49853 -17.03236 -16.75933 -16.17903 -16.07641 -15.24005 -14.90114 -14.72739 -14.46929 -14.24642 -14.11091 -13.71352 -13.55611 -13.19950 -13.05270 -12.75883 -12.68860 -12.60299 -12.43077 -12.29458 -12.19243 -12.02178 -11.69639 -11.65444 -11.45706 -11.26669 -10.91280 -10.42075 -9.83214 -9.37759 -9.03522 -8.01857 -6.22305 0.16659 0.31526 1.12787 1.39471 1.42267 1.49412 2.42426 2.61924 3.18826 3.39203 3.60620 3.87135 3.98587 4.13789 4.23861 4.31148 4.45037 4.62291 4.65857 4.76422 4.80461 4.86333 4.96491 4.97346 5.04732 5.19281 5.22317 5.25388 5.26230 5.27822 5.46641 5.57538 5.67023 5.68286 5.81851 5.83640 6.15057 6.24412 6.43509 6.85260 7.06235 7.48992 8.95110 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.023737 B = 0.004113 C = 0.003578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.313479 B = 6805.465442 C = 7824.809258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.104 4.104 3 C 0.223 3.777 4 H -0.001 1.001 5 C -0.549 4.549 6 H 0.057 0.943 7 C 0.020 3.980 8 N -0.913 5.913 9 Si 0.944 3.056 10 H -0.278 1.278 11 H -0.288 1.288 12 H -0.270 1.270 13 N -0.668 5.668 14 C 0.101 3.899 15 H 0.060 0.940 16 C -0.097 4.097 17 C -0.098 4.098 18 C -0.103 4.103 19 C -0.112 4.112 20 C -0.044 4.044 21 Cl -0.067 7.067 22 C -0.103 4.103 23 C -0.087 4.087 24 C -0.063 4.063 25 H 0.029 0.971 26 H 0.041 0.959 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.029 0.971 30 H 0.260 0.740 31 H 0.334 0.666 32 H 0.078 0.922 33 H 0.060 0.940 34 H 0.141 0.859 35 H 0.153 0.847 36 H 0.144 0.856 37 H 0.083 0.917 38 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.217 13.013 10.481 17.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.143 4.143 3 C 0.115 3.885 4 H 0.017 0.983 5 C -0.588 4.588 6 H 0.075 0.925 7 C -0.180 4.180 8 N -0.552 5.552 9 Si 0.771 3.229 10 H -0.204 1.204 11 H -0.214 1.214 12 H -0.195 1.195 13 N -0.296 5.296 14 C -0.011 4.011 15 H 0.078 0.922 16 C -0.136 4.136 17 C -0.099 4.099 18 C -0.121 4.121 19 C -0.130 4.130 20 C -0.070 4.070 21 Cl -0.038 7.038 22 C -0.122 4.122 23 C -0.087 4.087 24 C -0.100 4.100 25 H 0.048 0.952 26 H 0.060 0.940 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.048 0.952 30 H 0.069 0.931 31 H 0.152 0.848 32 H 0.096 0.904 33 H 0.078 0.922 34 H 0.159 0.841 35 H 0.171 0.829 36 H 0.162 0.838 37 H 0.101 0.899 38 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -4.962 12.903 10.267 17.219 hybrid contribution 2.074 0.140 -0.587 2.160 sum -2.888 13.043 9.680 16.497 Atomic orbital electron populations 1.21554 0.96478 0.99423 1.00704 1.21379 0.94338 0.98552 1.00023 1.18979 0.91714 0.91356 0.86473 0.98258 1.22191 0.93815 1.37227 1.05596 0.92509 1.25617 1.01584 0.95066 0.95691 1.70012 1.36242 1.38947 1.09999 0.85776 0.81763 0.78452 0.76932 1.20405 1.21442 1.19456 1.60801 1.54021 1.06311 1.08481 1.22060 0.93087 0.88173 0.97764 0.92172 1.21726 0.99333 0.92830 0.99673 1.20881 0.95104 0.95529 0.98369 1.20823 1.00816 0.91472 0.98999 1.21124 0.93051 0.99763 0.99097 1.20809 0.94091 0.89703 1.02409 1.98356 1.81748 1.42689 1.81054 1.20599 1.00957 0.90704 0.99917 1.20671 0.94692 0.95682 0.97685 1.21014 0.98811 0.90549 0.99649 0.95185 0.93989 0.92149 0.92272 0.95233 0.93111 0.84795 0.90353 0.92160 0.84121 0.82906 0.83785 0.89887 0.88849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.84 9.73 71.98 0.70 -4.14 16 2 C -0.10 -4.83 5.45 30.59 0.17 -4.66 16 3 C 0.22 10.54 1.99 44.17 0.09 10.62 16 4 H 0.00 -0.03 7.39 -2.39 -0.02 -0.05 16 5 C -0.55 -28.04 8.12 25.60 0.21 -27.83 16 6 H 0.06 2.82 7.39 -2.91 -0.02 2.80 16 7 C 0.02 1.07 5.29 84.65 0.45 1.52 16 8 N -0.91 -51.06 11.30 21.45 0.24 -50.81 16 9 Si 0.94 42.22 29.54 68.60 2.03 44.25 16 10 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 11 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 12 H -0.27 -11.70 7.11 99.48 0.71 -11.00 16 13 N -0.67 -25.56 5.63 -468.68 -2.64 -28.20 16 14 C 0.10 3.45 3.37 45.82 0.15 3.60 16 15 H 0.06 2.33 7.40 -2.38 -0.02 2.31 16 16 C -0.10 -3.16 5.71 30.52 0.17 -2.99 16 17 C -0.10 -2.78 6.14 -19.59 -0.12 -2.90 16 18 C -0.10 -2.49 10.04 22.30 0.22 -2.27 16 19 C -0.11 -2.40 9.83 22.26 0.22 -2.18 16 20 C -0.04 -0.97 6.32 22.30 0.14 -0.83 16 21 Cl -0.07 -1.32 28.96 -2.72 -0.08 -1.39 16 22 C -0.10 -2.41 9.82 22.32 0.22 -2.19 16 23 C -0.09 -2.31 6.14 -19.60 -0.12 -2.43 16 24 C -0.06 -1.72 6.49 30.51 0.20 -1.53 16 25 H 0.03 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.06 2.18 7.88 -2.39 -0.02 2.16 16 28 H 0.06 3.13 5.97 -2.39 -0.01 3.12 16 29 H 0.03 1.33 8.14 -2.39 -0.02 1.32 16 30 H 0.26 13.97 8.31 -92.71 -0.77 13.20 16 31 H 0.33 12.55 7.72 -89.69 -0.69 11.86 16 32 H 0.08 2.58 7.56 -2.39 -0.02 2.56 16 33 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.14 2.94 8.06 -2.91 -0.02 2.92 16 35 H 0.15 2.52 8.06 -2.91 -0.02 2.50 16 36 H 0.14 2.84 8.06 -2.91 -0.02 2.81 16 37 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.09 2.46 8.08 -2.39 -0.02 2.44 16 Total: -1.00 -54.91 323.76 2.61 -52.29 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: 0.36 Total: 22.07 kcal Atomic # 6 Polarization: -40.90 SS G_CDS: 2.70 Total: -38.20 kcal Atomic # 7 Polarization: -76.62 SS G_CDS: -2.40 Total: -79.02 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -0.08 Total: -1.39 kcal Total: -54.91 2.61 -52.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134850825.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.041 kcal (2) G-P(sol) polarization free energy of solvation -54.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds