Wall clock time and date at job start Tue Mar 31 2020 00:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47026 * 2 1 4 4 H 1.08995 * 109.47063 * 54.76337 * 3 2 1 5 5 C 1.50699 * 109.47067 * 174.76492 * 3 2 1 6 6 H 1.08003 * 120.00086 * 119.99991 * 5 3 2 7 7 C 1.37881 * 120.00069 * 299.72367 * 5 3 2 8 8 N 1.31512 * 119.99726 * 0.27442 * 7 5 3 9 9 Si 1.86799 * 119.99990 * 180.27531 * 7 5 3 10 10 H 1.48499 * 109.47084 * 60.00259 * 9 7 5 11 11 H 1.48510 * 109.46678 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.47308 * 299.99588 * 9 7 5 13 13 N 1.46904 * 109.46997 * 294.76093 * 3 2 1 14 14 C 1.46895 * 110.99752 * 153.52082 * 13 3 2 15 15 H 1.09004 * 110.73596 * 29.67095 * 14 13 3 16 16 C 1.54341 * 110.82215 * 153.08159 * 14 13 3 17 17 C 1.51378 * 105.17365 * 144.57720 * 16 14 13 18 18 C 1.38512 * 130.37818 * 162.83264 * 17 16 14 19 19 C 1.38076 * 120.23422 * 179.97438 * 18 17 16 20 20 C 1.38373 * 119.92229 * 359.97438 * 19 18 17 21 21 Cl 1.73595 * 120.04739 * 179.97438 * 20 19 18 22 22 C 1.38223 * 119.90631 * 0.02562 * 20 19 18 23 23 C 1.38223 * 109.75412 * 342.80615 * 17 16 14 24 24 C 1.51378 * 109.75849 * 0.02562 * 23 17 16 25 25 H 1.09004 * 109.46986 * 183.87914 * 1 2 3 26 26 H 1.08999 * 109.47301 * 303.87867 * 1 2 3 27 27 H 1.09007 * 109.46961 * 63.88437 * 1 2 3 28 28 H 1.09004 * 109.47407 * 240.00030 * 2 1 3 29 29 H 1.09006 * 109.46972 * 119.99896 * 2 1 3 30 30 H 0.97004 * 120.00069 * 180.02562 * 8 7 5 31 31 H 1.00894 * 110.99817 * 29.57025 * 13 3 2 32 32 H 1.08998 * 110.30324 * 263.50000 * 16 14 13 33 33 H 1.08998 * 110.30873 * 25.55366 * 16 14 13 34 34 H 1.08002 * 119.88236 * 359.95095 * 18 17 16 35 35 H 1.07997 * 120.04113 * 179.97438 * 19 18 17 36 36 H 1.07997 * 119.89889 * 179.97438 * 22 20 19 37 37 H 1.09003 * 110.30146 * 258.26872 * 24 23 17 38 38 H 1.09000 * 110.30138 * 136.11318 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6021 1.9827 0.8393 5 6 3.5414 1.4445 0.1296 6 1 4.1497 1.8880 -0.6448 7 6 4.1382 0.8852 1.2396 8 7 3.3975 0.3452 2.1826 9 14 5.9990 0.8945 1.4039 10 1 6.4891 2.2963 1.4011 11 1 6.3866 0.2376 2.6782 12 1 6.6003 0.1575 0.2636 13 7 1.6562 2.0975 -1.2577 14 6 1.5426 3.5513 -1.0807 15 1 2.2213 3.8995 -0.3020 16 6 1.8088 4.2884 -2.4104 17 6 0.8759 5.4804 -2.3963 18 6 0.8919 6.6414 -3.1516 19 6 -0.0772 7.6068 -2.9633 20 6 -1.0686 7.4143 -2.0173 21 17 -2.2881 8.6262 -1.7774 22 6 -1.0858 6.2563 -1.2629 23 6 -0.1139 5.2879 -1.4508 24 6 0.0865 3.9536 -0.7645 25 1 -0.3633 -1.0254 0.0695 26 1 -0.3634 0.5728 0.8532 27 1 -0.3633 0.4524 -0.9228 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8174 -0.0480 2.9637 31 1 0.7985 1.7093 -1.6205 32 1 2.8459 4.6204 -2.4577 33 1 1.5815 3.6384 -3.2553 34 1 1.6653 6.7922 -3.8902 35 1 -0.0615 8.5110 -3.5537 36 1 -1.8593 6.1064 -0.5243 37 1 -0.6055 3.2137 -1.1667 38 1 -0.0526 4.0572 0.3116 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134850846.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:51 Heat of formation + Delta-G solvation = 5.645472 kcal Electronic energy + Delta-G solvation = -19209.016369 eV Core-core repulsion = 16269.207425 eV Total energy + Delta-G solvation = -2939.808944 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -40.12223 -37.26166 -36.34661 -34.51532 -31.97781 -31.44154 -30.59028 -27.64323 -27.10753 -25.91449 -22.94610 -22.05062 -20.97647 -20.21074 -19.63318 -16.57992 -16.25238 -15.91215 -15.26788 -15.03708 -14.48092 -14.04421 -13.62637 -13.54031 -13.22187 -13.04419 -12.72643 -12.56880 -12.01924 -11.88603 -11.57395 -11.49979 -11.25022 -11.12576 -11.04219 -10.80287 -10.73032 -10.67023 -10.46882 -9.97677 -9.70928 -9.61991 -9.13288 -8.88042 -8.36787 -8.36095 -7.30108 -5.98471 -4.02805 1.15653 1.26999 2.05018 3.33315 3.37749 3.40954 3.60037 4.42771 4.51363 4.68363 4.87616 5.18047 5.22451 5.29786 5.31786 5.38853 5.65534 5.69387 5.76348 5.99672 6.09809 6.10937 6.12720 6.14785 6.20616 6.26205 6.36124 6.40839 6.62489 6.68213 6.80636 6.81902 7.04968 7.13726 7.46868 7.75053 7.89880 8.25439 8.36627 8.70754 9.04911 9.62442 11.06804 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.024853 B = 0.003822 C = 0.003593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.359741 B = 7325.126608 C = 7790.297629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.127 4.127 3 C 0.219 3.781 4 H 0.005 0.995 5 C -0.495 4.495 6 H 0.061 0.939 7 C 0.056 3.944 8 N -0.896 5.896 9 Si 0.895 3.105 10 H -0.279 1.279 11 H -0.289 1.289 12 H -0.277 1.277 13 N -0.676 5.676 14 C 0.101 3.899 15 H 0.094 0.906 16 C -0.076 4.076 17 C -0.081 4.081 18 C -0.099 4.099 19 C -0.115 4.115 20 C -0.040 4.040 21 Cl -0.080 7.080 22 C -0.102 4.102 23 C -0.076 4.076 24 C -0.112 4.112 25 H 0.037 0.963 26 H 0.042 0.958 27 H 0.034 0.966 28 H 0.041 0.959 29 H 0.100 0.900 30 H 0.260 0.740 31 H 0.320 0.680 32 H 0.077 0.923 33 H 0.087 0.913 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.128 0.872 37 H 0.080 0.920 38 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.741 11.094 -8.174 16.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.165 4.165 3 C 0.112 3.888 4 H 0.022 0.978 5 C -0.534 4.534 6 H 0.079 0.921 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.723 3.277 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.203 1.203 13 N -0.306 5.306 14 C -0.010 4.010 15 H 0.112 0.888 16 C -0.114 4.114 17 C -0.082 4.082 18 C -0.118 4.118 19 C -0.134 4.134 20 C -0.066 4.066 21 Cl -0.052 7.052 22 C -0.120 4.120 23 C -0.077 4.077 24 C -0.151 4.151 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.118 0.882 30 H 0.070 0.930 31 H 0.139 0.861 32 H 0.096 0.904 33 H 0.105 0.895 34 H 0.147 0.853 35 H 0.148 0.852 36 H 0.146 0.854 37 H 0.098 0.902 38 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -8.164 11.097 -8.195 16.030 hybrid contribution -0.079 0.252 0.717 0.764 sum -8.243 11.348 -7.478 15.895 Atomic orbital electron populations 1.21892 0.99621 0.99739 0.99530 1.21786 0.91190 1.00416 1.03142 1.19190 0.95424 0.89922 0.84274 0.97774 1.21185 0.91224 1.36708 1.04300 0.92061 1.24953 0.98084 0.95608 0.95824 1.69858 1.34834 1.39386 1.09514 0.86617 0.85808 0.78152 0.77134 1.20429 1.21491 1.20303 1.60701 1.36515 1.00624 1.32745 1.22168 0.92801 0.90298 0.95758 0.88803 1.21192 0.97872 0.92442 0.99855 1.20964 0.96798 0.95408 0.95001 1.20587 0.98649 0.92707 0.99818 1.20862 0.94243 1.00077 0.98194 1.20669 0.93573 0.91846 1.00536 1.98350 1.54872 1.55479 1.96450 1.20485 0.99506 0.92114 0.99930 1.20615 0.94183 0.95913 0.96966 1.22014 1.00123 0.92483 1.00477 0.94379 0.93849 0.94664 0.94023 0.88231 0.93018 0.86111 0.90426 0.89486 0.85339 0.85161 0.85437 0.90195 0.90644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 9.68 37.16 0.36 -2.41 16 2 C -0.13 -2.86 5.35 -26.73 -0.14 -3.00 16 3 C 0.22 5.15 1.87 -68.86 -0.13 5.02 16 4 H 0.00 0.12 7.83 -51.93 -0.41 -0.29 16 5 C -0.50 -13.17 8.64 -34.44 -0.30 -13.46 16 6 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 7 C 0.06 1.51 5.29 -17.82 -0.09 1.41 16 8 N -0.90 -24.88 11.30 55.43 0.63 -24.26 16 9 Si 0.89 21.08 29.54 -169.99 -5.02 16.06 16 10 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 11 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 12 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 13 N -0.68 -13.23 6.16 -99.49 -0.61 -13.84 16 14 C 0.10 1.76 3.18 -66.31 -0.21 1.55 16 15 H 0.09 1.87 7.74 -51.93 -0.40 1.46 16 16 C -0.08 -1.12 6.49 -26.85 -0.17 -1.30 16 17 C -0.08 -1.12 6.14 -104.19 -0.64 -1.76 16 18 C -0.10 -1.18 10.04 -39.54 -0.40 -1.58 16 19 C -0.12 -1.31 9.83 -39.59 -0.39 -1.70 16 20 C -0.04 -0.49 6.32 -39.54 -0.25 -0.74 16 21 Cl -0.08 -0.89 28.96 -51.86 -1.50 -2.39 16 22 C -0.10 -1.33 9.82 -39.50 -0.39 -1.71 16 23 C -0.08 -1.07 6.14 -104.21 -0.64 -1.71 16 24 C -0.11 -1.69 6.45 -26.85 -0.17 -1.86 16 25 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.04 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.03 0.57 6.57 -51.92 -0.34 0.23 16 28 H 0.04 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.10 2.55 5.96 -51.93 -0.31 2.25 16 30 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 31 H 0.32 5.72 5.84 -39.29 -0.23 5.49 16 32 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 33 H 0.09 1.26 8.08 -51.93 -0.42 0.84 16 34 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 35 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 36 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 37 H 0.08 1.15 7.54 -51.93 -0.39 0.76 16 38 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 323.09 15.07 4.87 4.87 Total: -1.00 -26.95 323.09 -10.63 -37.58 By element: Atomic # 1 Polarization: 10.67 SS G_CDS: -5.43 Total: 5.24 kcal Atomic # 6 Polarization: -19.70 SS G_CDS: -3.57 Total: -23.26 kcal Atomic # 7 Polarization: -38.11 SS G_CDS: 0.01 Total: -38.10 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -1.50 Total: -2.39 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -26.95 -10.63 -37.58 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134850846.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.225 kcal (2) G-P(sol) polarization free energy of solvation -26.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.580 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds