Wall clock time and date at job start Tue Mar 31 2020 00:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47026 * 2 1 4 4 H 1.08995 * 109.47063 * 54.76337 * 3 2 1 5 5 C 1.50699 * 109.47067 * 174.76492 * 3 2 1 6 6 H 1.08003 * 120.00086 * 119.99991 * 5 3 2 7 7 C 1.37881 * 120.00069 * 299.72367 * 5 3 2 8 8 N 1.31512 * 119.99726 * 0.27442 * 7 5 3 9 9 Si 1.86799 * 119.99990 * 180.27531 * 7 5 3 10 10 H 1.48499 * 109.47084 * 60.00259 * 9 7 5 11 11 H 1.48510 * 109.46678 * 179.97438 * 9 7 5 12 12 H 1.48493 * 109.47308 * 299.99588 * 9 7 5 13 13 N 1.46904 * 109.46997 * 294.76093 * 3 2 1 14 14 C 1.46895 * 110.99752 * 153.52082 * 13 3 2 15 15 H 1.09004 * 110.73596 * 29.67095 * 14 13 3 16 16 C 1.54341 * 110.82215 * 153.08159 * 14 13 3 17 17 C 1.51378 * 105.17365 * 144.57720 * 16 14 13 18 18 C 1.38512 * 130.37818 * 162.83264 * 17 16 14 19 19 C 1.38076 * 120.23422 * 179.97438 * 18 17 16 20 20 C 1.38373 * 119.92229 * 359.97438 * 19 18 17 21 21 Cl 1.73595 * 120.04739 * 179.97438 * 20 19 18 22 22 C 1.38223 * 119.90631 * 0.02562 * 20 19 18 23 23 C 1.38223 * 109.75412 * 342.80615 * 17 16 14 24 24 C 1.51378 * 109.75849 * 0.02562 * 23 17 16 25 25 H 1.09004 * 109.46986 * 183.87914 * 1 2 3 26 26 H 1.08999 * 109.47301 * 303.87867 * 1 2 3 27 27 H 1.09007 * 109.46961 * 63.88437 * 1 2 3 28 28 H 1.09004 * 109.47407 * 240.00030 * 2 1 3 29 29 H 1.09006 * 109.46972 * 119.99896 * 2 1 3 30 30 H 0.97004 * 120.00069 * 180.02562 * 8 7 5 31 31 H 1.00894 * 110.99817 * 29.57025 * 13 3 2 32 32 H 1.08998 * 110.30324 * 263.50000 * 16 14 13 33 33 H 1.08998 * 110.30873 * 25.55366 * 16 14 13 34 34 H 1.08002 * 119.88236 * 359.95095 * 18 17 16 35 35 H 1.07997 * 120.04113 * 179.97438 * 19 18 17 36 36 H 1.07997 * 119.89889 * 179.97438 * 22 20 19 37 37 H 1.09003 * 110.30146 * 258.26872 * 24 23 17 38 38 H 1.09000 * 110.30138 * 136.11318 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6021 1.9827 0.8393 5 6 3.5414 1.4445 0.1296 6 1 4.1497 1.8880 -0.6448 7 6 4.1382 0.8852 1.2396 8 7 3.3975 0.3452 2.1826 9 14 5.9990 0.8945 1.4039 10 1 6.4891 2.2963 1.4011 11 1 6.3866 0.2376 2.6782 12 1 6.6003 0.1575 0.2636 13 7 1.6562 2.0975 -1.2577 14 6 1.5426 3.5513 -1.0807 15 1 2.2213 3.8995 -0.3020 16 6 1.8088 4.2884 -2.4104 17 6 0.8759 5.4804 -2.3963 18 6 0.8919 6.6414 -3.1516 19 6 -0.0772 7.6068 -2.9633 20 6 -1.0686 7.4143 -2.0173 21 17 -2.2881 8.6262 -1.7774 22 6 -1.0858 6.2563 -1.2629 23 6 -0.1139 5.2879 -1.4508 24 6 0.0865 3.9536 -0.7645 25 1 -0.3633 -1.0254 0.0695 26 1 -0.3634 0.5728 0.8532 27 1 -0.3633 0.4524 -0.9228 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 3.8174 -0.0480 2.9637 31 1 0.7985 1.7093 -1.6205 32 1 2.8459 4.6204 -2.4577 33 1 1.5815 3.6384 -3.2553 34 1 1.6653 6.7922 -3.8902 35 1 -0.0615 8.5110 -3.5537 36 1 -1.8593 6.1064 -0.5243 37 1 -0.6055 3.2137 -1.1667 38 1 -0.0526 4.0572 0.3116 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134850846.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:50 Heat of formation + Delta-G solvation = -7.397338 kcal Electronic energy + Delta-G solvation = -19209.581948 eV Core-core repulsion = 16269.207425 eV Total energy + Delta-G solvation = -2940.374523 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.21321 -38.57010 -37.49694 -35.94011 -33.88744 -32.45559 -32.05810 -29.13416 -28.23717 -27.60135 -24.68154 -23.17791 -22.00770 -21.60697 -21.37738 -18.28220 -17.56911 -17.13490 -16.82955 -16.18060 -16.05962 -15.57105 -14.98983 -14.69697 -14.51264 -14.27683 -14.13984 -13.80188 -13.60621 -13.31775 -13.04442 -12.85236 -12.68170 -12.52363 -12.49662 -12.33080 -12.18748 -11.95476 -11.71629 -11.67497 -11.50696 -11.31805 -11.01792 -10.40537 -9.85538 -9.38525 -8.97467 -8.04184 -6.15789 0.16178 0.29974 1.12192 1.43841 1.44542 1.52137 2.45843 2.61058 3.20846 3.38166 3.50269 3.84947 3.97497 4.09936 4.21923 4.33835 4.35385 4.53524 4.59157 4.64286 4.67492 4.73026 4.81407 4.88554 5.03533 5.09285 5.18350 5.19469 5.24549 5.27260 5.29597 5.39967 5.63469 5.65859 5.78490 5.83509 5.93416 6.39401 6.54533 6.97906 7.02776 7.53329 8.98508 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.024853 B = 0.003822 C = 0.003593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.359741 B = 7325.126608 C = 7790.297629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.122 4.122 3 C 0.227 3.773 4 H -0.027 1.027 5 C -0.512 4.512 6 H 0.051 0.949 7 C 0.010 3.990 8 N -0.919 5.919 9 Si 0.952 3.048 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.273 1.273 13 N -0.674 5.674 14 C 0.097 3.903 15 H 0.059 0.941 16 C -0.065 4.065 17 C -0.093 4.093 18 C -0.096 4.096 19 C -0.110 4.110 20 C -0.045 4.045 21 Cl -0.069 7.069 22 C -0.108 4.108 23 C -0.091 4.091 24 C -0.102 4.102 25 H 0.055 0.945 26 H 0.036 0.964 27 H 0.059 0.941 28 H 0.037 0.963 29 H 0.066 0.934 30 H 0.259 0.741 31 H 0.332 0.668 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.154 0.846 35 H 0.157 0.843 36 H 0.135 0.865 37 H 0.088 0.912 38 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.264 12.358 -9.778 18.280 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.161 4.161 3 C 0.119 3.881 4 H -0.010 1.010 5 C -0.551 4.551 6 H 0.069 0.931 7 C -0.188 4.188 8 N -0.560 5.560 9 Si 0.778 3.222 10 H -0.201 1.201 11 H -0.212 1.212 12 H -0.198 1.198 13 N -0.305 5.305 14 C -0.014 4.014 15 H 0.078 0.922 16 C -0.103 4.103 17 C -0.093 4.093 18 C -0.114 4.114 19 C -0.128 4.128 20 C -0.072 4.072 21 Cl -0.040 7.040 22 C -0.127 4.127 23 C -0.092 4.092 24 C -0.141 4.141 25 H 0.074 0.926 26 H 0.056 0.944 27 H 0.077 0.923 28 H 0.056 0.944 29 H 0.085 0.915 30 H 0.068 0.932 31 H 0.151 0.849 32 H 0.095 0.905 33 H 0.111 0.889 34 H 0.172 0.828 35 H 0.175 0.825 36 H 0.153 0.847 37 H 0.106 0.894 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.700 12.374 -9.815 18.031 hybrid contribution 0.046 -0.062 1.201 1.204 sum -8.654 12.312 -8.614 17.340 Atomic orbital electron populations 1.21758 0.96272 1.01123 1.00525 1.21611 0.94209 0.99096 1.01205 1.18918 0.93814 0.90531 0.84832 1.00975 1.21490 0.92980 1.36484 1.04126 0.93087 1.25648 1.02037 0.95438 0.95650 1.69991 1.36230 1.39961 1.09804 0.85705 0.81141 0.78170 0.77142 1.20071 1.21155 1.19815 1.60589 1.37418 1.01862 1.30648 1.22081 0.93751 0.89046 0.96555 0.92232 1.21007 0.98251 0.92864 0.98176 1.20918 0.96542 0.95916 0.95931 1.20857 0.99191 0.91687 0.99617 1.21191 0.93262 1.00690 0.97649 1.20817 0.94064 0.91799 1.00476 1.98357 1.54432 1.54826 1.96417 1.20583 0.99496 0.92242 1.00374 1.20504 0.95286 0.95756 0.97609 1.21799 0.98496 0.93786 1.00036 0.92571 0.94441 0.92252 0.94448 0.91546 0.93170 0.84858 0.90533 0.88889 0.82841 0.82537 0.84722 0.89354 0.91760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.01 9.68 71.98 0.70 -4.31 16 2 C -0.12 -5.61 5.35 30.59 0.16 -5.45 16 3 C 0.23 11.00 1.87 44.17 0.08 11.08 16 4 H -0.03 -1.48 7.83 -2.39 -0.02 -1.50 16 5 C -0.51 -27.97 8.64 25.60 0.22 -27.75 16 6 H 0.05 2.82 7.81 -2.91 -0.02 2.80 16 7 C 0.01 0.57 5.29 84.66 0.45 1.02 16 8 N -0.92 -52.43 11.30 21.45 0.24 -52.19 16 9 Si 0.95 43.83 29.54 68.60 2.03 45.85 16 10 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 11 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 12 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 13 N -0.67 -26.67 6.16 -468.67 -2.89 -29.56 16 14 C 0.10 3.43 3.18 45.82 0.15 3.57 16 15 H 0.06 2.50 7.74 -2.38 -0.02 2.48 16 16 C -0.07 -1.89 6.49 30.52 0.20 -1.70 16 17 C -0.09 -2.41 6.14 -19.59 -0.12 -2.53 16 18 C -0.10 -2.00 10.04 22.30 0.22 -1.78 16 19 C -0.11 -2.16 9.83 22.26 0.22 -1.94 16 20 C -0.05 -1.00 6.32 22.30 0.14 -0.86 16 21 Cl -0.07 -1.38 28.96 -2.72 -0.08 -1.46 16 22 C -0.11 -2.67 9.82 22.32 0.22 -2.45 16 23 C -0.09 -2.49 6.14 -19.60 -0.12 -2.61 16 24 C -0.10 -3.10 6.45 30.52 0.20 -2.90 16 25 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 26 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.06 1.83 6.57 -2.38 -0.02 1.81 16 28 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.07 3.51 5.96 -2.38 -0.01 3.49 16 30 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 31 H 0.33 11.63 5.84 -89.70 -0.52 11.10 16 32 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.09 2.57 8.08 -2.39 -0.02 2.55 16 34 H 0.15 2.42 8.06 -2.91 -0.02 2.39 16 35 H 0.16 2.25 8.06 -2.91 -0.02 2.22 16 36 H 0.13 3.02 8.06 -2.91 -0.02 3.00 16 37 H 0.09 2.48 7.54 -2.39 -0.02 2.47 16 38 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -58.74 323.09 2.55 -56.19 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: 0.53 Total: 19.76 kcal Atomic # 6 Polarization: -41.32 SS G_CDS: 2.72 Total: -38.60 kcal Atomic # 7 Polarization: -79.10 SS G_CDS: -2.64 Total: -81.75 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 2.03 Total: 45.85 kcal Atomic # 17 Polarization: -1.38 SS G_CDS: -0.08 Total: -1.46 kcal Total: -58.74 2.55 -56.19 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134850846.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.792 kcal (2) G-P(sol) polarization free energy of solvation -58.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds