Wall clock time and date at job start Tue Mar 31 2020 00:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52993 * 109.46925 * 2 1 4 4 H 1.08996 * 109.47483 * 304.17359 * 3 2 1 5 5 C 1.50704 * 109.46552 * 184.17187 * 3 2 1 6 6 H 1.08001 * 120.00021 * 239.99298 * 5 3 2 7 7 C 1.37872 * 120.00347 * 60.00540 * 5 3 2 8 8 N 1.31517 * 119.99685 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00494 * 179.97438 * 7 5 3 10 10 H 1.48491 * 109.47121 * 89.99496 * 9 7 5 11 11 H 1.48494 * 109.47319 * 209.99950 * 9 7 5 12 12 H 1.48503 * 109.46544 * 329.99714 * 9 7 5 13 13 N 1.46898 * 109.47317 * 64.17655 * 3 2 1 14 14 C 1.46898 * 110.99996 * 205.87196 * 13 3 2 15 15 H 1.09006 * 110.88399 * 327.49705 * 14 13 3 16 16 C 1.54339 * 110.82541 * 91.01331 * 14 13 3 17 17 C 1.51377 * 105.16494 * 144.59325 * 16 14 13 18 18 C 1.38506 * 130.37027 * 162.84044 * 17 16 14 19 19 C 1.38086 * 120.23157 * 179.97438 * 18 17 16 20 20 C 1.38367 * 119.91889 * 0.02562 * 19 18 17 21 21 Cl 1.73601 * 120.04379 * 179.97438 * 20 19 18 22 22 C 1.38217 * 119.90852 * 0.02562 * 20 19 18 23 23 C 1.38223 * 109.75566 * 342.77397 * 17 16 14 24 24 C 1.51370 * 109.76088 * 0.03905 * 23 17 16 25 25 H 1.08997 * 109.47031 * 174.79667 * 1 2 3 26 26 H 1.09001 * 109.46990 * 294.79828 * 1 2 3 27 27 H 1.08997 * 109.47351 * 54.79284 * 1 2 3 28 28 H 1.09006 * 109.46833 * 239.99815 * 2 1 3 29 29 H 1.09002 * 109.47092 * 120.00361 * 2 1 3 30 30 H 0.97003 * 120.00429 * 180.02562 * 8 7 5 31 31 H 1.00898 * 111.00108 * 81.91084 * 13 3 2 32 32 H 1.09002 * 110.30074 * 263.49763 * 16 14 13 33 33 H 1.08998 * 110.30613 * 25.55274 * 16 14 13 34 34 H 1.08006 * 119.88726 * 0.21929 * 18 17 16 35 35 H 1.08007 * 120.03741 * 179.97438 * 19 18 17 36 36 H 1.08004 * 119.89505 * 179.97438 * 22 20 19 37 37 H 1.09001 * 110.30321 * 136.08338 * 24 23 17 38 38 H 1.08998 * 110.30316 * 258.14567 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6169 1.9774 -0.8502 5 6 3.5435 1.4436 -0.1034 6 1 4.1382 1.8920 0.6787 7 6 4.1598 0.8725 -1.1964 8 7 3.4356 0.3262 -2.1487 9 14 6.0234 0.8746 -1.3250 10 1 6.5647 -0.3538 -0.6900 11 1 6.4209 0.9088 -2.7553 12 1 6.5660 2.0705 -0.6316 13 7 1.6344 2.1052 1.2466 14 6 1.5379 3.5594 1.0624 15 1 2.2703 3.9083 0.3344 16 6 0.1096 3.9656 0.6416 17 6 -0.1359 5.3007 1.3114 18 6 -1.0887 6.2722 1.0531 19 6 -1.1236 7.4294 1.8058 20 6 -0.2035 7.6200 2.8215 21 17 -0.2440 9.0738 3.7694 22 6 0.7485 6.6518 3.0797 23 6 0.7825 5.4899 2.3269 24 6 1.7087 4.2954 2.4084 25 1 -0.3633 -1.0234 -0.0932 26 1 -0.3633 0.4310 0.9329 27 1 -0.3634 0.5925 -0.8396 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.8692 -0.0759 -2.9176 31 1 2.2662 1.8772 1.9995 32 1 0.0497 4.0695 -0.4418 33 1 -0.6120 3.2270 0.9906 34 1 -1.8095 6.1225 0.2627 35 1 -1.8677 8.1851 1.6014 36 1 1.4668 6.8009 3.8722 37 1 2.7405 4.6246 2.5312 38 1 1.4180 3.6472 3.2351 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134850866.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:55 Heat of formation + Delta-G solvation = 1.887949 kcal Electronic energy + Delta-G solvation = -19197.952733 eV Core-core repulsion = 16257.980850 eV Total energy + Delta-G solvation = -2939.971882 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 3.76 seconds Orbital eigenvalues (eV) -40.07318 -37.17140 -36.26853 -34.46770 -31.92707 -31.40747 -30.67715 -27.71342 -27.09707 -25.71567 -22.89820 -21.99999 -21.02257 -20.01062 -19.45712 -16.65217 -16.55313 -15.78934 -15.34416 -15.05874 -14.57768 -13.69033 -13.56359 -13.36843 -13.26914 -13.00955 -12.84317 -12.49366 -11.97776 -11.63502 -11.55461 -11.37586 -11.17140 -11.12996 -11.10546 -10.79916 -10.71371 -10.61404 -10.42075 -10.11724 -9.61987 -9.52434 -9.10554 -8.85893 -8.41532 -8.33375 -7.37022 -6.03907 -4.17044 1.18354 1.29071 2.06279 3.24260 3.31913 3.33969 3.62671 4.36076 4.52992 4.70903 4.89464 5.14426 5.23389 5.26301 5.32559 5.39825 5.70296 5.75963 5.80389 6.07060 6.11274 6.19316 6.28551 6.30433 6.36201 6.39808 6.47311 6.66042 6.69054 6.70939 6.84372 7.09182 7.14172 7.41215 7.55656 7.73857 8.04053 8.09497 8.28266 8.59722 8.95231 9.51101 10.96376 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.024709 B = 0.003848 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.928989 B = 7275.047036 C = 7935.858809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.106 4.106 3 C 0.215 3.785 4 H 0.033 0.967 5 C -0.547 4.547 6 H 0.053 0.947 7 C 0.068 3.932 8 N -0.884 5.884 9 Si 0.888 3.112 10 H -0.280 1.280 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.680 5.680 14 C 0.096 3.904 15 H 0.062 0.938 16 C -0.075 4.075 17 C -0.077 4.077 18 C -0.100 4.100 19 C -0.115 4.115 20 C -0.041 4.041 21 Cl -0.081 7.081 22 C -0.101 4.101 23 C -0.077 4.077 24 C -0.086 4.086 25 H 0.024 0.976 26 H 0.046 0.954 27 H 0.036 0.964 28 H 0.090 0.910 29 H 0.030 0.970 30 H 0.261 0.739 31 H 0.331 0.669 32 H 0.071 0.929 33 H 0.092 0.908 34 H 0.129 0.871 35 H 0.130 0.870 36 H 0.128 0.872 37 H 0.073 0.927 38 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.838 11.275 7.960 15.872 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.145 4.145 3 C 0.107 3.893 4 H 0.051 0.949 5 C -0.587 4.587 6 H 0.072 0.928 7 C -0.134 4.134 8 N -0.522 5.522 9 Si 0.716 3.284 10 H -0.206 1.206 11 H -0.212 1.212 12 H -0.201 1.201 13 N -0.309 5.309 14 C -0.015 4.015 15 H 0.080 0.920 16 C -0.113 4.113 17 C -0.078 4.078 18 C -0.118 4.118 19 C -0.133 4.133 20 C -0.067 4.067 21 Cl -0.052 7.052 22 C -0.120 4.120 23 C -0.078 4.078 24 C -0.123 4.123 25 H 0.043 0.957 26 H 0.065 0.935 27 H 0.056 0.944 28 H 0.108 0.892 29 H 0.049 0.951 30 H 0.072 0.928 31 H 0.148 0.852 32 H 0.090 0.910 33 H 0.111 0.889 34 H 0.146 0.854 35 H 0.148 0.852 36 H 0.146 0.854 37 H 0.091 0.909 38 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.493 11.189 7.747 16.042 hybrid contribution 2.017 0.448 -0.117 2.070 sum -6.476 11.637 7.630 15.348 Atomic orbital electron populations 1.21695 0.99001 0.98311 1.00325 1.21498 0.92067 0.99205 1.01715 1.19196 0.92676 0.91173 0.86216 0.94875 1.21866 0.92672 1.38187 1.05929 0.92842 1.24923 0.97949 0.94944 0.95619 1.69874 1.34910 1.37858 1.09564 0.86665 0.86093 0.78405 0.77248 1.20630 1.21199 1.20074 1.60966 1.55288 1.04649 1.10039 1.21996 0.94943 0.90151 0.94375 0.91977 1.21215 0.98801 0.91535 0.99740 1.20951 0.94378 0.96287 0.96154 1.20600 0.98731 0.92670 0.99841 1.20861 0.98850 0.98364 0.95244 1.20650 0.99709 0.89470 0.96879 1.98349 1.98212 1.36682 1.71974 1.20445 0.98495 0.92461 1.00611 1.20583 0.97384 0.94607 0.95203 1.21336 0.97860 0.93275 0.99821 0.95699 0.93489 0.94449 0.89190 0.95081 0.92848 0.85152 0.91007 0.88931 0.85354 0.85174 0.85432 0.90853 0.89326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 9.73 37.16 0.36 -2.31 16 2 C -0.11 -2.44 5.44 -26.73 -0.15 -2.59 16 3 C 0.22 5.01 1.86 -68.87 -0.13 4.89 16 4 H 0.03 0.86 7.84 -51.93 -0.41 0.45 16 5 C -0.55 -14.13 8.36 -34.44 -0.29 -14.42 16 6 H 0.05 1.37 7.73 -52.49 -0.41 0.96 16 7 C 0.07 1.82 5.29 -17.82 -0.09 1.72 16 8 N -0.88 -24.31 11.29 55.43 0.63 -23.68 16 9 Si 0.89 20.64 29.54 -169.99 -5.02 15.62 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 N -0.68 -13.08 5.57 -99.48 -0.55 -13.63 16 14 C 0.10 1.66 3.14 -66.30 -0.21 1.46 16 15 H 0.06 1.24 7.75 -51.93 -0.40 0.83 16 16 C -0.08 -1.17 6.49 -26.85 -0.17 -1.35 16 17 C -0.08 -1.09 6.14 -104.20 -0.64 -1.73 16 18 C -0.10 -1.23 10.04 -39.54 -0.40 -1.63 16 19 C -0.11 -1.33 9.83 -39.59 -0.39 -1.72 16 20 C -0.04 -0.50 6.32 -39.54 -0.25 -0.75 16 21 Cl -0.08 -0.89 28.96 -51.86 -1.50 -2.39 16 22 C -0.10 -1.30 9.82 -39.50 -0.39 -1.69 16 23 C -0.08 -1.08 6.14 -104.21 -0.64 -1.72 16 24 C -0.09 -1.24 6.22 -26.85 -0.17 -1.40 16 25 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.87 7.88 -51.93 -0.41 0.46 16 27 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.09 2.33 5.97 -51.93 -0.31 2.02 16 29 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.26 6.91 8.31 -40.82 -0.34 6.57 16 31 H 0.33 6.29 8.08 -39.29 -0.32 5.97 16 32 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 33 H 0.09 1.47 8.08 -51.93 -0.42 1.05 16 34 H 0.13 1.32 8.06 -52.48 -0.42 0.89 16 35 H 0.13 1.23 8.06 -52.48 -0.42 0.80 16 36 H 0.13 1.45 8.06 -52.48 -0.42 1.02 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.09 1.22 8.04 -51.93 -0.42 0.81 16 LS Contribution 326.08 15.07 4.91 4.91 Total: -1.00 -26.28 326.08 -10.69 -36.97 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -5.61 Total: 5.45 kcal Atomic # 6 Polarization: -19.70 SS G_CDS: -3.55 Total: -23.25 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: 0.07 Total: -37.31 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -1.50 Total: -2.39 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -26.28 -10.69 -36.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134850866.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.862 kcal (2) G-P(sol) polarization free energy of solvation -26.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.974 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.77 seconds