Wall clock time and date at job start Tue Mar 31 2020 00:54:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52993 * 109.46925 * 2 1 4 4 H 1.08996 * 109.47483 * 304.17359 * 3 2 1 5 5 C 1.50704 * 109.46552 * 184.17187 * 3 2 1 6 6 H 1.08001 * 120.00021 * 239.99298 * 5 3 2 7 7 C 1.37872 * 120.00347 * 60.00540 * 5 3 2 8 8 N 1.31517 * 119.99685 * 359.97438 * 7 5 3 9 9 Si 1.86801 * 120.00494 * 179.97438 * 7 5 3 10 10 H 1.48491 * 109.47121 * 89.99496 * 9 7 5 11 11 H 1.48494 * 109.47319 * 209.99950 * 9 7 5 12 12 H 1.48503 * 109.46544 * 329.99714 * 9 7 5 13 13 N 1.46898 * 109.47317 * 64.17655 * 3 2 1 14 14 C 1.46898 * 110.99996 * 205.87196 * 13 3 2 15 15 H 1.09006 * 110.88399 * 327.49705 * 14 13 3 16 16 C 1.54339 * 110.82541 * 91.01331 * 14 13 3 17 17 C 1.51377 * 105.16494 * 144.59325 * 16 14 13 18 18 C 1.38506 * 130.37027 * 162.84044 * 17 16 14 19 19 C 1.38086 * 120.23157 * 179.97438 * 18 17 16 20 20 C 1.38367 * 119.91889 * 0.02562 * 19 18 17 21 21 Cl 1.73601 * 120.04379 * 179.97438 * 20 19 18 22 22 C 1.38217 * 119.90852 * 0.02562 * 20 19 18 23 23 C 1.38223 * 109.75566 * 342.77397 * 17 16 14 24 24 C 1.51370 * 109.76088 * 0.03905 * 23 17 16 25 25 H 1.08997 * 109.47031 * 174.79667 * 1 2 3 26 26 H 1.09001 * 109.46990 * 294.79828 * 1 2 3 27 27 H 1.08997 * 109.47351 * 54.79284 * 1 2 3 28 28 H 1.09006 * 109.46833 * 239.99815 * 2 1 3 29 29 H 1.09002 * 109.47092 * 120.00361 * 2 1 3 30 30 H 0.97003 * 120.00429 * 180.02562 * 8 7 5 31 31 H 1.00898 * 111.00108 * 81.91084 * 13 3 2 32 32 H 1.09002 * 110.30074 * 263.49763 * 16 14 13 33 33 H 1.08998 * 110.30613 * 25.55274 * 16 14 13 34 34 H 1.08006 * 119.88726 * 0.21929 * 18 17 16 35 35 H 1.08007 * 120.03741 * 179.97438 * 19 18 17 36 36 H 1.08004 * 119.89505 * 179.97438 * 22 20 19 37 37 H 1.09001 * 110.30321 * 136.08338 * 24 23 17 38 38 H 1.08998 * 110.30316 * 258.14567 * 24 23 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6169 1.9774 -0.8502 5 6 3.5435 1.4436 -0.1034 6 1 4.1382 1.8920 0.6787 7 6 4.1598 0.8725 -1.1964 8 7 3.4356 0.3262 -2.1487 9 14 6.0234 0.8746 -1.3250 10 1 6.5647 -0.3538 -0.6900 11 1 6.4209 0.9088 -2.7553 12 1 6.5660 2.0705 -0.6316 13 7 1.6344 2.1052 1.2466 14 6 1.5379 3.5594 1.0624 15 1 2.2703 3.9083 0.3344 16 6 0.1096 3.9656 0.6416 17 6 -0.1359 5.3007 1.3114 18 6 -1.0887 6.2722 1.0531 19 6 -1.1236 7.4294 1.8058 20 6 -0.2035 7.6200 2.8215 21 17 -0.2440 9.0738 3.7694 22 6 0.7485 6.6518 3.0797 23 6 0.7825 5.4899 2.3269 24 6 1.7087 4.2954 2.4084 25 1 -0.3633 -1.0234 -0.0932 26 1 -0.3633 0.4310 0.9329 27 1 -0.3634 0.5925 -0.8396 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 3.8692 -0.0759 -2.9176 31 1 2.2662 1.8772 1.9995 32 1 0.0497 4.0695 -0.4418 33 1 -0.6120 3.2270 0.9906 34 1 -1.8095 6.1225 0.2627 35 1 -1.8677 8.1851 1.6014 36 1 1.4668 6.8009 3.8722 37 1 2.7405 4.6246 2.5312 38 1 1.4180 3.6472 3.2351 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000134850866.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:53 Heat of formation + Delta-G solvation = -10.222004 kcal Electronic energy + Delta-G solvation = -19198.477860 eV Core-core repulsion = 16257.980850 eV Total energy + Delta-G solvation = -2940.497009 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.16305 -38.45336 -37.45724 -35.91622 -33.79359 -32.43151 -32.22127 -29.15800 -28.24418 -27.42179 -24.64306 -23.13080 -22.11091 -21.37981 -21.20761 -18.62135 -17.55019 -17.00207 -16.77131 -16.54189 -15.97476 -15.21624 -14.90186 -14.74545 -14.42131 -14.31630 -14.21405 -13.70319 -13.46203 -13.25382 -13.10782 -12.87630 -12.73054 -12.58909 -12.40878 -12.20968 -12.19015 -11.81146 -11.72891 -11.66037 -11.46095 -11.30376 -10.96758 -10.44091 -9.83498 -9.37774 -9.07542 -8.04566 -6.26157 0.17441 0.31574 1.13181 1.38613 1.40827 1.48746 2.40824 2.62497 3.15553 3.45586 3.47549 3.81072 3.98856 4.11733 4.24994 4.34297 4.50077 4.63182 4.67616 4.70450 4.79464 4.87142 4.93215 4.95824 5.06786 5.13267 5.21289 5.23855 5.26743 5.28051 5.46515 5.56164 5.66074 5.68241 5.81374 5.83435 6.13570 6.22994 6.41216 6.84186 7.04091 7.45581 8.92080 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.024709 B = 0.003848 C = 0.003527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.928989 B = 7275.047036 C = 7935.858809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.103 4.103 3 C 0.225 3.775 4 H 0.001 0.999 5 C -0.560 4.560 6 H 0.051 0.949 7 C 0.021 3.979 8 N -0.910 5.910 9 Si 0.947 3.053 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.272 1.272 13 N -0.668 5.668 14 C 0.092 3.908 15 H 0.030 0.970 16 C -0.067 4.067 17 C -0.094 4.094 18 C -0.099 4.099 19 C -0.110 4.110 20 C -0.045 4.045 21 Cl -0.068 7.068 22 C -0.105 4.105 23 C -0.089 4.089 24 C -0.075 4.075 25 H 0.041 0.959 26 H 0.059 0.941 27 H 0.031 0.969 28 H 0.059 0.941 29 H 0.028 0.972 30 H 0.261 0.739 31 H 0.334 0.666 32 H 0.061 0.939 33 H 0.090 0.910 34 H 0.148 0.852 35 H 0.156 0.844 36 H 0.141 0.859 37 H 0.077 0.923 38 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.418 12.549 9.190 17.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.142 4.142 3 C 0.116 3.884 4 H 0.019 0.981 5 C -0.599 4.599 6 H 0.069 0.931 7 C -0.179 4.179 8 N -0.549 5.549 9 Si 0.774 3.226 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.197 1.197 13 N -0.297 5.297 14 C -0.019 4.019 15 H 0.048 0.952 16 C -0.105 4.105 17 C -0.094 4.094 18 C -0.117 4.117 19 C -0.129 4.129 20 C -0.071 4.071 21 Cl -0.039 7.039 22 C -0.124 4.124 23 C -0.089 4.089 24 C -0.112 4.112 25 H 0.060 0.940 26 H 0.078 0.922 27 H 0.050 0.950 28 H 0.077 0.923 29 H 0.047 0.953 30 H 0.070 0.930 31 H 0.151 0.849 32 H 0.079 0.921 33 H 0.108 0.892 34 H 0.166 0.834 35 H 0.173 0.827 36 H 0.159 0.841 37 H 0.095 0.905 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -9.078 12.473 8.994 17.857 hybrid contribution 2.166 0.134 -0.479 2.222 sum -6.912 12.607 8.515 16.709 Atomic orbital electron populations 1.21549 0.96351 0.99452 1.00715 1.21360 0.94419 0.98385 0.99995 1.18928 0.91289 0.91422 0.86774 0.98103 1.22210 0.94157 1.37696 1.05811 0.93067 1.25630 1.01887 0.94874 0.95510 1.70004 1.36351 1.38597 1.09971 0.85729 0.81405 0.78443 0.77073 1.20138 1.21140 1.19725 1.60897 1.54669 1.05868 1.08262 1.21966 0.95351 0.88972 0.95578 0.95230 1.21024 0.97423 0.92767 0.99236 1.20877 0.95752 0.96123 0.96669 1.20837 0.98414 0.92251 1.00244 1.21161 0.98886 0.98435 0.94379 1.20808 0.99519 0.89763 0.97051 1.98357 1.98157 1.35784 1.71640 1.20577 0.98985 0.92038 1.00751 1.20529 0.97474 0.94992 0.95934 1.21178 0.98480 0.93516 0.98053 0.93972 0.92223 0.95022 0.92287 0.95288 0.92961 0.84882 0.92084 0.89175 0.83396 0.82674 0.84133 0.90452 0.88431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.79 9.73 71.98 0.70 -4.09 16 2 C -0.10 -4.79 5.44 30.59 0.17 -4.63 16 3 C 0.22 10.75 1.86 44.17 0.08 10.83 16 4 H 0.00 0.05 7.84 -2.39 -0.02 0.04 16 5 C -0.56 -29.47 8.36 25.60 0.21 -29.25 16 6 H 0.05 2.65 7.73 -2.91 -0.02 2.63 16 7 C 0.02 1.14 5.29 84.65 0.45 1.59 16 8 N -0.91 -51.26 11.29 21.45 0.24 -51.02 16 9 Si 0.95 42.76 29.54 68.60 2.03 44.79 16 10 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 11 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 12 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 13 N -0.67 -25.96 5.57 -468.65 -2.61 -28.57 16 14 C 0.09 3.24 3.14 45.83 0.14 3.38 16 15 H 0.03 1.23 7.75 -2.38 -0.02 1.21 16 16 C -0.07 -2.10 6.49 30.52 0.20 -1.90 16 17 C -0.09 -2.56 6.14 -19.59 -0.12 -2.68 16 18 C -0.10 -2.24 10.04 22.30 0.22 -2.02 16 19 C -0.11 -2.25 9.83 22.26 0.22 -2.03 16 20 C -0.04 -0.99 6.32 22.30 0.14 -0.85 16 21 Cl -0.07 -1.33 28.96 -2.72 -0.08 -1.41 16 22 C -0.10 -2.49 9.82 22.32 0.22 -2.27 16 23 C -0.09 -2.38 6.14 -19.60 -0.12 -2.50 16 24 C -0.07 -2.12 6.22 30.52 0.19 -1.93 16 25 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.06 2.15 7.88 -2.39 -0.02 2.13 16 27 H 0.03 1.23 8.14 -2.39 -0.02 1.22 16 28 H 0.06 3.13 5.97 -2.38 -0.01 3.12 16 29 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 30 H 0.26 14.07 8.31 -92.71 -0.77 13.30 16 31 H 0.33 12.66 8.08 -89.70 -0.72 11.94 16 32 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 33 H 0.09 2.84 8.08 -2.39 -0.02 2.82 16 34 H 0.15 2.68 8.06 -2.91 -0.02 2.66 16 35 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 36 H 0.14 2.88 8.06 -2.91 -0.02 2.86 16 37 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.10 2.58 8.04 -2.39 -0.02 2.56 16 Total: -1.00 -56.44 326.08 2.61 -53.83 By element: Atomic # 1 Polarization: 20.42 SS G_CDS: 0.33 Total: 20.75 kcal Atomic # 6 Polarization: -41.06 SS G_CDS: 2.71 Total: -38.36 kcal Atomic # 7 Polarization: -77.22 SS G_CDS: -2.37 Total: -79.59 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Atomic # 17 Polarization: -1.33 SS G_CDS: -0.08 Total: -1.41 kcal Total: -56.44 2.61 -53.83 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134850866.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.606 kcal (2) G-P(sol) polarization free energy of solvation -56.439 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds