Wall clock time and date at job start Tue Mar 31 2020 00:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53002 * 115.55972 * 2 1 4 4 C 1.53073 * 117.51400 * 214.29097 * 2 1 3 5 5 C 1.52996 * 117.49575 * 145.68392 * 2 1 3 6 6 H 1.09000 * 117.49837 * 215.00393 * 5 2 1 7 7 C 1.50696 * 117.50151 * 0.02562 * 5 2 1 8 8 O 1.21284 * 120.00064 * 359.91236 * 7 5 2 9 9 N 1.34783 * 120.00310 * 179.90867 * 7 5 2 10 10 C 1.46493 * 120.00107 * 179.97438 * 9 7 5 11 11 C 1.50706 * 109.47128 * 90.00402 * 10 9 7 12 12 H 1.08005 * 119.99758 * 359.97438 * 11 10 9 13 13 C 1.37871 * 120.00102 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00217 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99766 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47483 * 269.99808 * 15 13 11 17 17 H 1.48499 * 109.47134 * 30.00322 * 15 13 11 18 18 H 1.48507 * 109.46904 * 150.00145 * 15 13 11 19 19 C 1.46497 * 119.99658 * 0.02562 * 9 7 5 20 20 C 1.53008 * 109.46926 * 269.99594 * 19 9 7 21 21 F 1.39896 * 109.47270 * 59.99967 * 20 19 9 22 22 F 1.39898 * 109.47051 * 180.02562 * 20 19 9 23 23 F 1.39898 * 109.46919 * 299.99970 * 20 19 9 24 24 H 1.08995 * 109.47180 * 274.31672 * 1 2 3 25 25 H 1.09003 * 109.46607 * 34.31339 * 1 2 3 26 26 H 1.09000 * 109.46953 * 154.31202 * 1 2 3 27 27 H 1.08997 * 109.46472 * 205.68721 * 3 2 1 28 28 H 1.09002 * 109.47233 * 325.68628 * 3 2 1 29 29 H 1.08996 * 109.46981 * 85.68787 * 3 2 1 30 30 H 1.09004 * 117.49244 * 145.03531 * 4 2 1 31 31 H 1.09002 * 117.53210 * 359.97438 * 4 2 1 32 32 H 1.09001 * 109.47786 * 330.00675 * 10 9 7 33 33 H 1.09006 * 109.47401 * 210.00260 * 10 9 7 34 34 H 0.97001 * 119.99646 * 359.97438 * 14 13 11 35 35 H 1.08998 * 109.47569 * 29.99343 * 19 9 7 36 36 H 1.08997 * 109.47185 * 150.00014 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1902 1.3803 0.0000 4 6 2.2372 -1.1216 -0.7649 5 6 2.2365 -1.1209 0.7651 6 1 3.1713 -0.8750 1.2687 7 6 1.3720 -2.1408 1.4605 8 8 0.1638 -2.0528 1.4018 9 7 1.9415 -3.1508 2.1476 10 6 1.1012 -4.1419 2.8241 11 6 0.8112 -5.2817 1.8818 12 1 1.2125 -5.2689 0.8791 13 6 0.0338 -6.3409 2.2997 14 7 -0.4553 -6.3563 3.5204 15 14 -0.3262 -7.7533 1.1314 16 1 -1.5688 -7.4632 0.3718 17 1 0.8067 -7.9137 0.1847 18 1 -0.5026 -9.0062 1.9090 19 6 3.4009 -3.2568 2.2189 20 6 3.9082 -4.1055 1.0512 21 9 3.5429 -3.5023 -0.1570 22 9 5.3018 -4.2073 1.1196 23 9 3.3437 -5.3835 1.1238 24 1 -0.3633 0.0773 1.0247 25 1 -0.3632 0.8489 -0.5793 26 1 -0.3633 -0.9261 -0.4455 27 1 3.1824 1.3084 -0.4455 28 1 1.5812 2.0743 -0.5793 29 1 2.2773 1.7414 1.0247 30 1 3.1725 -0.8757 -1.2679 31 1 1.6127 -1.8600 -1.2678 32 1 0.1643 -3.6761 3.1298 33 1 1.6224 -4.5209 3.7033 34 1 -0.2686 -5.6227 4.1269 35 1 3.8408 -2.2612 2.1623 36 1 3.6855 -3.7269 3.1602 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152749933.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:54 Heat of formation + Delta-G solvation = -165.897761 kcal Electronic energy + Delta-G solvation = -23720.121396 eV Core-core repulsion = 19790.307874 eV Total energy + Delta-G solvation = -3929.813522 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -49.56354 -47.17653 -46.89224 -39.91963 -37.18740 -35.27401 -32.98995 -29.49746 -29.15037 -27.31223 -26.79253 -24.03141 -23.13331 -22.17406 -19.67650 -18.52923 -18.09476 -18.00955 -17.07357 -16.80707 -16.54610 -15.17290 -14.53990 -14.15123 -13.96861 -13.86976 -13.79973 -13.68902 -13.50830 -13.37028 -13.18737 -13.08593 -12.89494 -12.64320 -12.34025 -12.11817 -11.81718 -11.76411 -11.61070 -11.33065 -11.09226 -10.83035 -10.60804 -10.09667 -10.00205 -9.64187 -9.23038 -8.94020 -8.37198 -7.91220 -6.37235 -4.08055 2.83433 3.25511 3.43185 3.47081 3.49354 3.65596 3.97102 4.27098 4.38630 4.50978 4.55574 4.77819 4.87007 4.96020 5.12579 5.18374 5.33782 5.37313 5.44103 5.61164 5.67825 5.83295 5.94840 6.05598 6.12665 6.22336 6.33940 6.63082 6.74386 7.00241 7.14389 7.96233 7.98510 8.44544 8.74786 8.84371 9.58975 11.00389 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.017233 B = 0.007560 C = 0.006104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.385104 B = 3702.783991 C = 4586.418795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.100 4.100 3 C -0.113 4.113 4 C -0.135 4.135 5 C -0.191 4.191 6 H 0.114 0.886 7 C 0.543 3.457 8 O -0.516 6.516 9 N -0.592 5.592 10 C 0.234 3.766 11 C -0.599 4.599 12 H 0.059 0.941 13 C 0.022 3.978 14 N -0.912 5.912 15 Si 1.070 2.930 16 H -0.288 1.288 17 H -0.288 1.288 18 H -0.284 1.284 19 C 0.078 3.922 20 C 0.425 3.575 21 F -0.184 7.184 22 F -0.197 7.197 23 F -0.152 7.152 24 H 0.066 0.934 25 H 0.044 0.956 26 H 0.066 0.934 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.059 0.941 30 H 0.099 0.901 31 H 0.099 0.901 32 H 0.040 0.960 33 H 0.024 0.976 34 H 0.266 0.734 35 H 0.108 0.892 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.345 11.611 -5.014 16.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.100 4.100 3 C -0.170 4.170 4 C -0.173 4.173 5 C -0.212 4.212 6 H 0.132 0.868 7 C 0.330 3.670 8 O -0.391 6.391 9 N -0.323 5.323 10 C 0.115 3.885 11 C -0.638 4.638 12 H 0.077 0.923 13 C -0.182 4.182 14 N -0.548 5.548 15 Si 0.898 3.102 16 H -0.214 1.214 17 H -0.214 1.214 18 H -0.210 1.210 19 C -0.050 4.050 20 C 0.369 3.631 21 F -0.165 7.165 22 F -0.179 7.179 23 F -0.133 7.133 24 H 0.085 0.915 25 H 0.063 0.937 26 H 0.085 0.915 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.078 0.922 30 H 0.117 0.883 31 H 0.118 0.882 32 H 0.057 0.943 33 H 0.041 0.959 34 H 0.076 0.924 35 H 0.126 0.874 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 8.862 10.170 -5.169 14.445 hybrid contribution 1.224 1.105 0.006 1.649 sum 10.086 11.275 -5.163 15.984 Atomic orbital electron populations 1.21342 0.90707 1.01314 1.02527 1.21610 0.96021 0.90319 1.02097 1.21369 0.99778 0.94009 1.01873 1.23137 1.02347 1.00871 0.90903 1.22449 1.01522 1.01007 0.96245 0.86771 1.19520 0.88105 0.80993 0.78336 1.90687 1.14313 1.74588 1.59561 1.47972 1.03758 1.28023 1.52570 1.19525 0.90117 0.86329 0.92513 1.22303 1.35398 1.05418 1.00667 0.92263 1.25714 0.93298 1.00484 0.98718 1.70793 1.43610 1.34429 1.05999 0.83528 0.76228 0.75622 0.74822 1.21439 1.21382 1.20960 1.22541 0.84960 1.00728 0.96745 1.21449 0.74551 0.81712 0.85369 1.93162 1.91349 1.83260 1.48762 1.93129 1.31665 1.96530 1.96558 1.93379 1.83806 1.39900 1.96208 0.91480 0.93674 0.91473 0.92491 0.91833 0.92227 0.88273 0.88221 0.94252 0.95856 0.92361 0.87381 0.86513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.55 8.09 37.16 0.30 -1.25 16 2 C -0.10 -1.35 2.70 -154.47 -0.42 -1.77 16 3 C -0.11 -1.14 9.85 37.16 0.37 -0.78 16 4 C -0.14 -1.88 7.94 -26.70 -0.21 -2.09 16 5 C -0.19 -2.86 4.13 -91.78 -0.38 -3.24 16 6 H 0.11 1.40 6.44 -51.93 -0.33 1.06 16 7 C 0.54 10.86 7.10 -10.98 -0.08 10.78 16 8 O -0.52 -12.22 12.68 5.55 0.07 -12.15 16 9 N -0.59 -11.97 2.40 -175.06 -0.42 -12.39 16 10 C 0.23 5.82 4.45 -5.19 -0.02 5.79 16 11 C -0.60 -16.70 7.68 -34.44 -0.26 -16.97 16 12 H 0.06 1.70 6.43 -52.48 -0.34 1.36 16 13 C 0.02 0.63 5.46 -17.82 -0.10 0.53 16 14 N -0.91 -27.51 13.65 55.43 0.76 -26.75 16 15 Si 1.07 26.10 29.90 -169.99 -5.08 21.01 16 16 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 17 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 19 C 0.08 1.21 5.38 -4.04 -0.02 1.18 16 20 C 0.43 7.25 3.29 37.16 0.12 7.37 16 21 F -0.18 -3.18 14.27 2.25 0.03 -3.15 16 22 F -0.20 -2.97 17.32 2.25 0.04 -2.93 16 23 F -0.15 -3.23 13.88 2.25 0.03 -3.20 16 24 H 0.07 1.13 7.26 -51.93 -0.38 0.75 16 25 H 0.04 0.57 7.92 -51.93 -0.41 0.15 16 26 H 0.07 1.18 7.02 -51.93 -0.36 0.82 16 27 H 0.06 0.50 7.90 -51.93 -0.41 0.09 16 28 H 0.06 0.58 7.92 -51.93 -0.41 0.17 16 29 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.10 1.14 8.05 -51.93 -0.42 0.72 16 31 H 0.10 1.59 8.05 -51.93 -0.42 1.17 16 32 H 0.04 1.09 7.29 -51.93 -0.38 0.71 16 33 H 0.02 0.58 7.76 -51.93 -0.40 0.17 16 34 H 0.27 7.92 7.22 -40.82 -0.29 7.62 16 35 H 0.11 1.25 6.00 -51.93 -0.31 0.94 16 36 H 0.12 1.62 7.89 -51.93 -0.41 1.21 16 LS Contribution 302.82 15.07 4.56 4.56 Total: -1.00 -32.36 302.82 -5.21 -37.57 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: -4.50 Total: -2.14 kcal Atomic # 6 Polarization: 0.27 SS G_CDS: -0.70 Total: -0.43 kcal Atomic # 7 Polarization: -39.48 SS G_CDS: 0.34 Total: -39.14 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: 0.07 Total: -12.15 kcal Atomic # 9 Polarization: -9.38 SS G_CDS: 0.10 Total: -9.28 kcal Atomic # 14 Polarization: 26.10 SS G_CDS: -5.08 Total: 21.01 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -32.36 -5.21 -37.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152749933.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -128.328 kcal (2) G-P(sol) polarization free energy of solvation -32.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.570 kcal (6) G-S(sol) free energy of system = (1) + (5) -165.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds