Wall clock time and date at job start Tue Mar 31 2020 00:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53002 * 115.55972 * 2 1 4 4 C 1.53073 * 117.51400 * 214.29097 * 2 1 3 5 5 C 1.52996 * 117.49575 * 145.68392 * 2 1 3 6 6 H 1.09000 * 117.49837 * 215.00393 * 5 2 1 7 7 C 1.50696 * 117.50151 * 0.02562 * 5 2 1 8 8 O 1.21284 * 120.00064 * 359.91236 * 7 5 2 9 9 N 1.34783 * 120.00310 * 179.90867 * 7 5 2 10 10 C 1.46493 * 120.00107 * 179.97438 * 9 7 5 11 11 C 1.50706 * 109.47128 * 90.00402 * 10 9 7 12 12 H 1.08005 * 119.99758 * 359.97438 * 11 10 9 13 13 C 1.37871 * 120.00102 * 179.97438 * 11 10 9 14 14 N 1.31516 * 120.00217 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99766 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47483 * 269.99808 * 15 13 11 17 17 H 1.48499 * 109.47134 * 30.00322 * 15 13 11 18 18 H 1.48507 * 109.46904 * 150.00145 * 15 13 11 19 19 C 1.46497 * 119.99658 * 0.02562 * 9 7 5 20 20 C 1.53008 * 109.46926 * 269.99594 * 19 9 7 21 21 F 1.39896 * 109.47270 * 59.99967 * 20 19 9 22 22 F 1.39898 * 109.47051 * 180.02562 * 20 19 9 23 23 F 1.39898 * 109.46919 * 299.99970 * 20 19 9 24 24 H 1.08995 * 109.47180 * 274.31672 * 1 2 3 25 25 H 1.09003 * 109.46607 * 34.31339 * 1 2 3 26 26 H 1.09000 * 109.46953 * 154.31202 * 1 2 3 27 27 H 1.08997 * 109.46472 * 205.68721 * 3 2 1 28 28 H 1.09002 * 109.47233 * 325.68628 * 3 2 1 29 29 H 1.08996 * 109.46981 * 85.68787 * 3 2 1 30 30 H 1.09004 * 117.49244 * 145.03531 * 4 2 1 31 31 H 1.09002 * 117.53210 * 359.97438 * 4 2 1 32 32 H 1.09001 * 109.47786 * 330.00675 * 10 9 7 33 33 H 1.09006 * 109.47401 * 210.00260 * 10 9 7 34 34 H 0.97001 * 119.99646 * 359.97438 * 14 13 11 35 35 H 1.08998 * 109.47569 * 29.99343 * 19 9 7 36 36 H 1.08997 * 109.47185 * 150.00014 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1902 1.3803 0.0000 4 6 2.2372 -1.1216 -0.7649 5 6 2.2365 -1.1209 0.7651 6 1 3.1713 -0.8750 1.2687 7 6 1.3720 -2.1408 1.4605 8 8 0.1638 -2.0528 1.4018 9 7 1.9415 -3.1508 2.1476 10 6 1.1012 -4.1419 2.8241 11 6 0.8112 -5.2817 1.8818 12 1 1.2125 -5.2689 0.8791 13 6 0.0338 -6.3409 2.2997 14 7 -0.4553 -6.3563 3.5204 15 14 -0.3262 -7.7533 1.1314 16 1 -1.5688 -7.4632 0.3718 17 1 0.8067 -7.9137 0.1847 18 1 -0.5026 -9.0062 1.9090 19 6 3.4009 -3.2568 2.2189 20 6 3.9082 -4.1055 1.0512 21 9 3.5429 -3.5023 -0.1570 22 9 5.3018 -4.2073 1.1196 23 9 3.3437 -5.3835 1.1238 24 1 -0.3633 0.0773 1.0247 25 1 -0.3632 0.8489 -0.5793 26 1 -0.3633 -0.9261 -0.4455 27 1 3.1824 1.3084 -0.4455 28 1 1.5812 2.0743 -0.5793 29 1 2.2773 1.7414 1.0247 30 1 3.1725 -0.8757 -1.2679 31 1 1.6127 -1.8600 -1.2678 32 1 0.1643 -3.6761 3.1298 33 1 1.6224 -4.5209 3.7033 34 1 -0.2686 -5.6227 4.1269 35 1 3.8408 -2.2612 2.1623 36 1 3.6855 -3.7269 3.1602 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152749933.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:24:54 Heat of formation + Delta-G solvation = -185.648954 kcal Electronic energy + Delta-G solvation = -23720.977872 eV Core-core repulsion = 19790.307874 eV Total energy + Delta-G solvation = -3930.669998 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -50.93539 -48.48376 -48.37925 -41.35832 -38.51108 -36.91368 -35.08705 -30.87064 -30.50094 -28.53857 -28.32013 -25.79359 -24.61170 -23.75148 -21.00133 -19.83403 -19.61629 -19.39738 -18.75584 -18.42555 -17.99926 -16.77376 -15.94070 -15.72367 -15.51359 -15.34188 -15.26074 -15.09800 -14.87154 -14.62733 -14.55308 -14.52102 -14.37143 -13.95496 -13.77370 -13.58158 -13.30042 -13.12188 -13.02364 -12.74891 -12.65279 -12.54190 -12.10850 -11.99365 -11.23149 -11.13135 -10.81188 -10.58829 -10.43605 -9.73732 -8.65094 -6.36707 1.37767 1.47113 1.54723 1.72407 1.84727 2.01579 2.51931 2.78061 2.96393 3.07075 3.17921 3.23063 3.60440 3.67966 3.83939 3.93940 4.11430 4.20189 4.24442 4.58713 4.71435 4.82748 4.83980 4.90080 4.98750 5.05627 5.10653 5.13065 5.30347 5.37430 5.55458 5.82480 6.18834 6.39303 6.51968 7.19429 7.38406 8.71854 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.017233 B = 0.007560 C = 0.006104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1624.385104 B = 3702.783991 C = 4586.418795 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.100 4.100 2 C -0.094 4.094 3 C -0.107 4.107 4 C -0.129 4.129 5 C -0.196 4.196 6 H 0.154 0.846 7 C 0.532 3.468 8 O -0.567 6.567 9 N -0.598 5.598 10 C 0.246 3.754 11 C -0.597 4.597 12 H 0.048 0.952 13 C -0.029 4.029 14 N -0.936 5.936 15 Si 1.108 2.892 16 H -0.281 1.281 17 H -0.275 1.275 18 H -0.276 1.276 19 C 0.075 3.925 20 C 0.425 3.575 21 F -0.185 7.185 22 F -0.181 7.181 23 F -0.183 7.183 24 H 0.043 0.957 25 H 0.072 0.928 26 H 0.031 0.969 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.066 0.934 30 H 0.135 0.865 31 H 0.069 0.931 32 H 0.002 0.998 33 H 0.026 0.974 34 H 0.256 0.744 35 H 0.158 0.842 36 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.807 13.215 -6.068 19.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.094 4.094 3 C -0.164 4.164 4 C -0.166 4.166 5 C -0.217 4.217 6 H 0.171 0.829 7 C 0.322 3.678 8 O -0.445 6.445 9 N -0.329 5.329 10 C 0.125 3.875 11 C -0.636 4.636 12 H 0.066 0.934 13 C -0.227 4.227 14 N -0.574 5.574 15 Si 0.931 3.069 16 H -0.208 1.208 17 H -0.200 1.200 18 H -0.201 1.201 19 C -0.051 4.051 20 C 0.369 3.631 21 F -0.167 7.167 22 F -0.163 7.163 23 F -0.164 7.164 24 H 0.062 0.938 25 H 0.090 0.910 26 H 0.050 0.950 27 H 0.098 0.902 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.153 0.847 31 H 0.088 0.912 32 H 0.020 0.980 33 H 0.044 0.956 34 H 0.066 0.934 35 H 0.176 0.824 36 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 11.372 11.795 -6.227 17.528 hybrid contribution 0.466 0.654 0.312 0.861 sum 11.839 12.449 -5.915 18.169 Atomic orbital electron populations 1.21260 0.92743 1.00588 1.01126 1.21777 0.94734 0.92137 1.00786 1.21388 1.00721 0.91346 1.02897 1.23198 1.03379 1.00205 0.89836 1.22502 1.02266 1.00259 0.96674 0.82883 1.20528 0.88218 0.81418 0.77607 1.90669 1.16865 1.75844 1.61132 1.47895 1.05671 1.27072 1.52240 1.19032 0.89716 0.86354 0.92445 1.22521 1.34504 1.06097 1.00488 0.93351 1.27004 0.93247 1.03103 0.99379 1.70897 1.45177 1.34506 1.06795 0.83029 0.76718 0.73529 0.73600 1.20761 1.19969 1.20072 1.22944 0.81886 1.03394 0.96828 1.21608 0.75111 0.80565 0.85768 1.93159 1.91463 1.83044 1.49017 1.93158 1.30233 1.96399 1.96503 1.93310 1.84550 1.42195 1.96373 0.93801 0.90963 0.95003 0.90208 0.90711 0.91472 0.84733 0.91194 0.97973 0.95569 0.93416 0.82432 0.84860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.04 8.09 71.99 0.58 -2.46 16 2 C -0.09 -2.31 2.70 -52.15 -0.14 -2.45 16 3 C -0.11 -1.67 9.85 71.98 0.71 -0.97 16 4 C -0.13 -3.25 7.94 30.62 0.24 -3.01 16 5 C -0.20 -5.38 4.13 -11.54 -0.05 -5.42 16 6 H 0.15 2.95 6.44 -2.39 -0.02 2.93 16 7 C 0.53 21.28 7.10 87.65 0.62 21.90 16 8 O -0.57 -28.03 12.68 -3.04 -0.04 -28.07 16 9 N -0.60 -24.01 2.40 -826.14 -1.98 -26.00 16 10 C 0.25 12.58 4.45 85.64 0.38 12.96 16 11 C -0.60 -34.10 7.68 25.60 0.20 -33.91 16 12 H 0.05 2.83 6.43 -2.91 -0.02 2.81 16 13 C -0.03 -1.71 5.46 84.65 0.46 -1.25 16 14 N -0.94 -57.92 13.65 21.45 0.29 -57.63 16 15 Si 1.11 53.04 29.90 68.60 2.05 55.09 16 16 H -0.28 -13.09 7.11 99.48 0.71 -12.38 16 17 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 18 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 19 C 0.08 2.13 5.38 86.38 0.46 2.60 16 20 C 0.43 13.60 3.29 71.98 0.24 13.84 16 21 F -0.19 -6.01 14.27 44.97 0.64 -5.37 16 22 F -0.18 -4.92 17.32 44.97 0.78 -4.14 16 23 F -0.18 -7.70 13.88 44.97 0.62 -7.07 16 24 H 0.04 1.52 7.26 -2.39 -0.02 1.50 16 25 H 0.07 1.73 7.92 -2.39 -0.02 1.71 16 26 H 0.03 1.16 7.02 -2.39 -0.02 1.14 16 27 H 0.08 0.94 7.90 -2.39 -0.02 0.92 16 28 H 0.07 1.04 7.92 -2.39 -0.02 1.02 16 29 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.13 2.45 8.05 -2.38 -0.02 2.43 16 31 H 0.07 2.20 8.05 -2.39 -0.02 2.18 16 32 H 0.00 0.13 7.29 -2.39 -0.02 0.12 16 33 H 0.03 1.33 7.76 -2.38 -0.02 1.31 16 34 H 0.26 15.87 7.22 -92.71 -0.67 15.20 16 35 H 0.16 2.88 6.00 -2.39 -0.01 2.87 16 36 H 0.13 3.36 7.89 -2.39 -0.02 3.34 16 Total: -1.00 -74.30 302.82 7.28 -67.02 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: 1.20 Total: 4.32 kcal Atomic # 6 Polarization: -1.86 SS G_CDS: 3.71 Total: 1.85 kcal Atomic # 7 Polarization: -81.93 SS G_CDS: -1.69 Total: -83.62 kcal Atomic # 8 Polarization: -28.03 SS G_CDS: -0.04 Total: -28.07 kcal Atomic # 9 Polarization: -18.63 SS G_CDS: 2.04 Total: -16.58 kcal Atomic # 14 Polarization: 53.04 SS G_CDS: 2.05 Total: 55.09 kcal Total: -74.30 7.28 -67.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152749933.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.627 kcal (2) G-P(sol) polarization free energy of solvation -74.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds