Wall clock time and date at job start Tue Mar 31 2020 00:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29027 * 124.91430 * 2 1 4 4 C 1.31777 * 117.12381 * 179.97438 * 3 2 1 5 5 C 1.50699 * 122.75112 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.46827 * 305.02196 * 5 4 3 7 7 N 1.46905 * 109.47050 * 179.97438 * 6 5 4 8 8 C 1.46899 * 110.99783 * 170.00015 * 7 6 5 9 9 C 1.50696 * 109.47414 * 284.31416 * 8 7 6 10 10 H 1.07999 * 119.99817 * 4.65427 * 9 8 7 11 11 C 1.37882 * 120.00094 * 184.66038 * 9 8 7 12 12 N 1.31509 * 120.00053 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99888 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47043 * 59.99745 * 13 11 9 15 15 H 1.48498 * 109.46871 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.46974 * 299.99604 * 13 11 9 17 17 C 1.46898 * 111.00370 * 293.95641 * 7 6 5 18 18 C 1.52994 * 109.47315 * 164.05071 * 17 7 6 19 19 C 1.47206 * 109.47263 * 179.54509 * 18 17 7 20 20 N 8.84685 * 119.51652 * 17.00258 * 2 1 3 21 21 C 1.33647 * 114.50052 * 0.23363 * 4 3 2 22 22 S 1.70971 * 124.91556 * 179.97438 * 2 1 3 23 23 H 1.08999 * 109.47127 * 89.99788 * 1 2 3 24 24 H 1.09000 * 109.47009 * 209.99889 * 1 2 3 25 25 H 1.09001 * 109.47151 * 329.99471 * 1 2 3 26 26 H 1.09003 * 109.47351 * 185.02881 * 5 4 3 27 27 H 1.08997 * 109.47528 * 65.02111 * 5 4 3 28 28 H 1.08999 * 109.47499 * 300.00108 * 6 5 4 29 29 H 1.09004 * 109.47095 * 60.00358 * 6 5 4 30 30 H 1.08995 * 109.47420 * 44.31645 * 8 7 6 31 31 H 1.09002 * 109.47092 * 164.31331 * 8 7 6 32 32 H 0.96999 * 120.00484 * 180.02562 * 12 11 9 33 33 H 1.08997 * 109.46994 * 284.05690 * 17 7 6 34 34 H 1.09002 * 109.46651 * 44.04895 * 17 7 6 35 35 H 1.09002 * 109.47326 * 299.54341 * 18 17 7 36 36 H 1.08998 * 109.47202 * 59.54172 * 18 17 7 37 37 H 1.07996 * 126.03543 * 179.76932 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5511 0.8794 0.0005 5 6 4.5307 2.0246 0.0000 6 6 4.2334 2.9494 -1.1821 7 7 5.1878 4.0662 -1.1822 8 6 5.0896 4.8424 -2.4255 9 6 5.7511 4.0822 -3.5460 10 1 6.1329 3.0872 -3.3717 11 6 5.8689 4.6572 -4.7937 12 7 5.4035 5.8687 -5.0060 13 14 6.6883 3.7145 -6.1828 14 1 5.9402 2.4571 -6.4363 15 1 6.6884 4.5465 -7.4128 16 1 8.0870 3.3906 -5.8035 17 6 4.9920 4.9263 -0.0077 18 6 6.2183 5.8220 0.1788 19 6 6.0175 6.6916 1.3494 20 7 5.8656 7.3622 2.2512 21 6 3.9354 -0.4006 -0.0040 22 16 2.4856 -1.4020 0.0006 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8899 0.5139 26 1 5.5448 1.6353 -0.0895 27 1 4.4368 2.5835 0.9311 28 1 4.3272 2.3906 -2.1132 29 1 3.2192 3.3388 -1.0926 30 1 4.0400 5.0077 -2.6687 31 1 5.5878 5.8030 -2.2944 32 1 5.4861 6.2731 -5.8839 33 1 4.1080 5.5467 -0.1550 34 1 4.8570 4.3060 0.8784 35 1 7.1011 5.2017 0.3342 36 1 6.3581 6.4364 -0.7106 37 1 4.9545 -0.7580 -0.0079 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000152917544.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:32 Heat of formation + Delta-G solvation = 65.126446 kcal Electronic energy + Delta-G solvation = -18706.757501 eV Core-core repulsion = 15803.864303 eV Total energy + Delta-G solvation = -2902.893198 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 2.09 seconds Orbital eigenvalues (eV) -39.91129 -37.56211 -36.13585 -33.34842 -32.64519 -31.21875 -29.62874 -28.11063 -26.52132 -23.87924 -23.17990 -22.01496 -19.87730 -19.64753 -17.41464 -17.22098 -16.50121 -15.43099 -15.16129 -14.97169 -14.61075 -14.32120 -14.05508 -13.78616 -13.43037 -13.24138 -12.79138 -12.69929 -12.48524 -12.28032 -12.20631 -12.03139 -11.62856 -11.42609 -11.15881 -10.96037 -10.85321 -10.73572 -10.39084 -10.25199 -9.76575 -9.58686 -9.39206 -9.28095 -8.60746 -8.43176 -7.37769 -6.04272 -4.05360 0.73114 1.36289 1.73154 2.84993 3.01057 3.06428 3.32551 3.37298 3.39548 4.06214 4.21482 4.43666 4.87428 5.00882 5.22650 5.28138 5.30698 5.32175 5.33846 5.43640 5.60404 5.62610 5.71332 5.86980 5.91510 5.99359 6.19968 6.23221 6.38209 6.55993 6.69344 7.14669 7.29394 7.76512 7.81400 7.82243 8.02659 8.12331 8.47492 9.01561 9.58821 11.06224 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.010351 B = 0.005211 C = 0.003785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2704.440436 B = 5372.242803 C = 7394.958688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.050 3.950 3 N -0.465 5.465 4 C 0.084 3.916 5 C -0.046 4.046 6 C 0.075 3.925 7 N -0.534 5.534 8 C 0.189 3.811 9 C -0.505 4.505 10 H 0.063 0.937 11 C 0.056 3.944 12 N -0.899 5.899 13 Si 0.896 3.104 14 H -0.278 1.278 15 H -0.289 1.289 16 H -0.276 1.276 17 C 0.057 3.943 18 C -0.028 4.028 19 C 0.221 3.779 20 N -0.462 5.462 21 C -0.258 4.258 22 S 0.091 5.909 23 H 0.086 0.914 24 H 0.078 0.922 25 H 0.088 0.912 26 H 0.087 0.913 27 H 0.076 0.924 28 H 0.082 0.918 29 H 0.032 0.968 30 H -0.008 1.008 31 H 0.038 0.962 32 H 0.262 0.738 33 H 0.033 0.967 34 H 0.070 0.930 35 H 0.115 0.885 36 H 0.117 0.883 37 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.515 -13.238 9.613 17.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.229 4.229 3 N -0.180 5.180 4 C -0.048 4.048 5 C -0.086 4.086 6 C -0.053 4.053 7 N -0.258 5.258 8 C 0.064 3.936 9 C -0.543 4.543 10 H 0.081 0.919 11 C -0.145 4.145 12 N -0.538 5.538 13 Si 0.724 3.276 14 H -0.204 1.204 15 H -0.214 1.214 16 H -0.201 1.201 17 C -0.073 4.073 18 C -0.068 4.068 19 C -0.096 4.096 20 N -0.139 5.139 21 C -0.397 4.397 22 S 0.345 5.655 23 H 0.105 0.895 24 H 0.097 0.903 25 H 0.107 0.893 26 H 0.106 0.894 27 H 0.095 0.905 28 H 0.101 0.899 29 H 0.050 0.950 30 H 0.010 0.990 31 H 0.056 0.944 32 H 0.071 0.929 33 H 0.052 0.948 34 H 0.088 0.912 35 H 0.133 0.867 36 H 0.135 0.865 37 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -5.750 -12.853 10.832 17.765 hybrid contribution 0.342 0.304 -1.358 1.433 sum -5.408 -12.550 9.474 16.629 Atomic orbital electron populations 1.20433 0.85379 1.03964 1.03940 1.27034 1.01682 0.90819 1.03368 1.66096 1.04808 1.31344 1.15757 1.20416 0.89994 0.94503 0.99842 1.20369 0.95661 0.92378 1.00202 1.21821 0.93591 0.92335 0.97577 1.62090 1.50329 1.10321 1.03106 1.19830 0.95671 0.93428 0.84635 1.21091 1.37532 1.01965 0.93751 0.91902 1.24963 0.95839 0.94978 0.98721 1.69930 1.46566 1.14270 1.23072 0.86599 0.80053 0.79671 0.81308 1.20402 1.21441 1.20134 1.21932 0.94579 0.95025 0.95758 1.19401 1.01602 0.95466 0.90352 1.29416 0.92530 0.93445 0.94256 1.81067 1.09424 1.11088 1.12342 1.26810 1.02803 0.95558 1.14491 1.83820 0.98733 1.13458 1.69524 0.89546 0.90325 0.89312 0.89401 0.90549 0.89948 0.94950 0.99029 0.94436 0.92856 0.94838 0.91197 0.86713 0.86549 0.80556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 10.46 36.01 0.38 -0.27 16 2 C 0.05 0.60 7.39 -13.46 -0.10 0.50 16 3 N -0.46 -6.96 10.34 -8.06 -0.08 -7.04 16 4 C 0.08 1.20 6.08 -84.23 -0.51 0.69 16 5 C -0.05 -0.66 5.67 -27.88 -0.16 -0.82 16 6 C 0.08 1.35 4.68 -3.82 -0.02 1.33 16 7 N -0.53 -10.03 4.38 -236.07 -1.03 -11.06 16 8 C 0.19 4.47 4.59 -4.98 -0.02 4.44 16 9 C -0.50 -13.23 8.61 -34.44 -0.30 -13.52 16 10 H 0.06 1.63 7.66 -52.49 -0.40 1.23 16 11 C 0.06 1.52 5.46 -17.82 -0.10 1.43 16 12 N -0.90 -25.61 13.29 55.43 0.74 -24.87 16 13 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 14 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 15 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 16 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 17 C 0.06 0.89 4.79 -3.83 -0.02 0.87 16 18 C -0.03 -0.39 5.77 -29.52 -0.17 -0.56 16 19 C 0.22 3.31 15.43 -20.82 -0.32 2.99 16 20 N -0.46 -7.92 18.52 42.08 0.78 -7.14 16 21 C -0.26 -3.14 11.07 29.12 0.32 -2.82 16 22 S 0.09 0.96 23.18 -107.50 -2.49 -1.53 16 23 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 24 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 25 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.09 1.17 8.03 -51.93 -0.42 0.76 16 27 H 0.08 1.04 6.28 -51.93 -0.33 0.72 16 28 H 0.08 1.67 7.32 -51.93 -0.38 1.29 16 29 H 0.03 0.62 8.05 -51.93 -0.42 0.20 16 30 H -0.01 -0.21 8.00 -51.93 -0.42 -0.63 16 31 H 0.04 0.92 6.24 -51.93 -0.32 0.59 16 32 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 33 H 0.03 0.56 8.05 -51.93 -0.42 0.14 16 34 H 0.07 0.97 5.94 -51.93 -0.31 0.66 16 35 H 0.11 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.12 1.75 6.53 -51.93 -0.34 1.41 16 37 H 0.18 1.75 8.06 -52.49 -0.42 1.33 16 LS Contribution 331.61 15.07 5.00 5.00 Total: -1.00 -30.59 331.61 -8.13 -38.72 By element: Atomic # 1 Polarization: 2.78 SS G_CDS: -5.00 Total: -2.22 kcal Atomic # 6 Polarization: -4.71 SS G_CDS: -1.01 Total: -5.72 kcal Atomic # 7 Polarization: -50.51 SS G_CDS: 0.40 Total: -50.12 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -2.49 Total: -1.53 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.59 -8.13 -38.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152917544.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.850 kcal (2) G-P(sol) polarization free energy of solvation -30.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.724 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.09 seconds