Wall clock time and date at job start Tue Mar 31 2020 00:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29027 * 124.91430 * 2 1 4 4 C 1.31777 * 117.12381 * 179.97438 * 3 2 1 5 5 C 1.50699 * 122.75112 * 179.97438 * 4 3 2 6 6 C 1.53002 * 109.46827 * 305.02196 * 5 4 3 7 7 N 1.46905 * 109.47050 * 179.97438 * 6 5 4 8 8 C 1.46899 * 110.99783 * 170.00015 * 7 6 5 9 9 C 1.50696 * 109.47414 * 284.31416 * 8 7 6 10 10 H 1.07999 * 119.99817 * 4.65427 * 9 8 7 11 11 C 1.37882 * 120.00094 * 184.66038 * 9 8 7 12 12 N 1.31509 * 120.00053 * 359.97438 * 11 9 8 13 13 Si 1.86801 * 119.99888 * 180.02562 * 11 9 8 14 14 H 1.48495 * 109.47043 * 59.99745 * 13 11 9 15 15 H 1.48498 * 109.46871 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.46974 * 299.99604 * 13 11 9 17 17 C 1.46898 * 111.00370 * 293.95641 * 7 6 5 18 18 C 1.52994 * 109.47315 * 164.05071 * 17 7 6 19 19 C 1.47206 * 109.47263 * 179.54509 * 18 17 7 20 20 N 8.84685 * 119.51652 * 17.00258 * 2 1 3 21 21 C 1.33647 * 114.50052 * 0.23363 * 4 3 2 22 22 S 1.70971 * 124.91556 * 179.97438 * 2 1 3 23 23 H 1.08999 * 109.47127 * 89.99788 * 1 2 3 24 24 H 1.09000 * 109.47009 * 209.99889 * 1 2 3 25 25 H 1.09001 * 109.47151 * 329.99471 * 1 2 3 26 26 H 1.09003 * 109.47351 * 185.02881 * 5 4 3 27 27 H 1.08997 * 109.47528 * 65.02111 * 5 4 3 28 28 H 1.08999 * 109.47499 * 300.00108 * 6 5 4 29 29 H 1.09004 * 109.47095 * 60.00358 * 6 5 4 30 30 H 1.08995 * 109.47420 * 44.31645 * 8 7 6 31 31 H 1.09002 * 109.47092 * 164.31331 * 8 7 6 32 32 H 0.96999 * 120.00484 * 180.02562 * 12 11 9 33 33 H 1.08997 * 109.46994 * 284.05690 * 17 7 6 34 34 H 1.09002 * 109.46651 * 44.04895 * 17 7 6 35 35 H 1.09002 * 109.47326 * 299.54341 * 18 17 7 36 36 H 1.08998 * 109.47202 * 59.54172 * 18 17 7 37 37 H 1.07996 * 126.03543 * 179.76932 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5511 0.8794 0.0005 5 6 4.5307 2.0246 0.0000 6 6 4.2334 2.9494 -1.1821 7 7 5.1878 4.0662 -1.1822 8 6 5.0896 4.8424 -2.4255 9 6 5.7511 4.0822 -3.5460 10 1 6.1329 3.0872 -3.3717 11 6 5.8689 4.6572 -4.7937 12 7 5.4035 5.8687 -5.0060 13 14 6.6883 3.7145 -6.1828 14 1 5.9402 2.4571 -6.4363 15 1 6.6884 4.5465 -7.4128 16 1 8.0870 3.3906 -5.8035 17 6 4.9920 4.9263 -0.0077 18 6 6.2183 5.8220 0.1788 19 6 6.0175 6.6916 1.3494 20 7 5.8656 7.3622 2.2512 21 6 3.9354 -0.4006 -0.0040 22 16 2.4856 -1.4020 0.0006 23 1 -0.3633 0.0000 -1.0277 24 1 -0.3633 -0.8900 0.5138 25 1 -0.3633 0.8899 0.5139 26 1 5.5448 1.6353 -0.0895 27 1 4.4368 2.5835 0.9311 28 1 4.3272 2.3906 -2.1132 29 1 3.2192 3.3388 -1.0926 30 1 4.0400 5.0077 -2.6687 31 1 5.5878 5.8030 -2.2944 32 1 5.4861 6.2731 -5.8839 33 1 4.1080 5.5467 -0.1550 34 1 4.8570 4.3060 0.8784 35 1 7.1011 5.2017 0.3342 36 1 6.3581 6.4364 -0.7106 37 1 4.9545 -0.7580 -0.0079 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000152917544.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:32:32 Heat of formation + Delta-G solvation = 46.055533 kcal Electronic energy + Delta-G solvation = -18707.584478 eV Core-core repulsion = 15803.864303 eV Total energy + Delta-G solvation = -2903.720175 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.89775 -39.00213 -37.48792 -34.83191 -34.18516 -32.42265 -30.96198 -29.17197 -28.16499 -25.09055 -24.84609 -23.19987 -21.39990 -20.59121 -18.58908 -18.40019 -18.36082 -16.85370 -16.31613 -16.17731 -15.99302 -15.85883 -15.27597 -15.01847 -14.52360 -14.39432 -14.13629 -14.02276 -13.72600 -13.59564 -13.37979 -13.15174 -12.99711 -12.77563 -12.58978 -12.54739 -12.38909 -12.19220 -12.07061 -11.68797 -11.38201 -11.19614 -10.54377 -10.48872 -10.30150 -9.53216 -9.01746 -8.11377 -6.19119 -0.17589 0.50421 0.81729 1.47384 1.48745 1.56359 1.75361 1.82957 1.85547 2.46716 2.91480 3.21803 3.23519 3.57937 4.07313 4.09461 4.21594 4.30615 4.39200 4.44206 4.54469 4.60093 4.67942 4.76116 4.82879 4.94218 5.02028 5.09890 5.18341 5.19412 5.30010 5.36365 5.44252 5.75347 6.15539 6.36697 6.58764 6.65742 6.89412 6.95929 7.49590 8.98749 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.010351 B = 0.005211 C = 0.003785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2704.440436 B = 5372.242803 C = 7394.958688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.033 3.967 3 N -0.507 5.507 4 C 0.055 3.945 5 C -0.032 4.032 6 C 0.085 3.915 7 N -0.528 5.528 8 C 0.202 3.798 9 C -0.513 4.513 10 H 0.064 0.936 11 C 0.004 3.996 12 N -0.935 5.935 13 Si 0.959 3.041 14 H -0.274 1.274 15 H -0.289 1.289 16 H -0.264 1.264 17 C 0.057 3.943 18 C -0.016 4.016 19 C 0.245 3.755 20 N -0.495 5.495 21 C -0.263 4.263 22 S 0.146 5.854 23 H 0.093 0.907 24 H 0.106 0.894 25 H 0.085 0.915 26 H 0.101 0.899 27 H 0.084 0.916 28 H 0.054 0.946 29 H 0.013 0.987 30 H -0.045 1.045 31 H 0.029 0.971 32 H 0.262 0.738 33 H 0.020 0.980 34 H 0.095 0.905 35 H 0.142 0.858 36 H 0.107 0.893 37 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.859 -15.493 10.243 19.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.244 4.244 3 N -0.223 5.223 4 C -0.076 4.076 5 C -0.073 4.073 6 C -0.044 4.044 7 N -0.251 5.251 8 C 0.075 3.925 9 C -0.551 4.551 10 H 0.082 0.918 11 C -0.194 4.194 12 N -0.576 5.576 13 Si 0.785 3.215 14 H -0.200 1.200 15 H -0.214 1.214 16 H -0.189 1.189 17 C -0.072 4.072 18 C -0.056 4.056 19 C -0.072 4.072 20 N -0.173 5.173 21 C -0.402 4.402 22 S 0.400 5.600 23 H 0.112 0.888 24 H 0.124 0.876 25 H 0.104 0.896 26 H 0.120 0.880 27 H 0.103 0.897 28 H 0.072 0.928 29 H 0.031 0.969 30 H -0.027 1.027 31 H 0.047 0.953 32 H 0.071 0.929 33 H 0.039 0.961 34 H 0.113 0.887 35 H 0.160 0.840 36 H 0.125 0.875 37 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -5.098 -15.131 11.485 19.669 hybrid contribution 0.057 0.924 -1.528 1.787 sum -5.041 -14.207 9.958 18.066 Atomic orbital electron populations 1.20597 0.83293 1.05190 1.04735 1.27630 1.03216 0.91167 1.02420 1.66098 1.05457 1.33223 1.17564 1.20413 0.90048 0.95166 1.01980 1.20200 0.96606 0.92008 0.98442 1.21685 0.92340 0.92222 0.98146 1.62020 1.50540 1.10340 1.02245 1.19520 0.92950 0.93484 0.86497 1.21427 1.36991 1.02049 0.94657 0.91825 1.25780 0.96524 0.95783 1.01266 1.70057 1.48049 1.15856 1.23597 0.85586 0.79481 0.78284 0.78165 1.19972 1.21441 1.18926 1.22007 0.94937 0.95123 0.95146 1.19331 1.01721 0.95090 0.89447 1.29393 0.91409 0.92672 0.93689 1.81098 1.10584 1.12117 1.13548 1.27145 1.04684 0.95401 1.12942 1.83585 0.96857 1.11506 1.68054 0.88846 0.87576 0.89635 0.88035 0.89746 0.92785 0.96892 1.02692 0.95307 0.92944 0.96136 0.88677 0.84036 0.87535 0.78515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.19 10.46 71.24 0.75 -0.45 16 2 C 0.03 0.77 7.39 88.52 0.65 1.42 16 3 N -0.51 -15.01 10.34 -179.40 -1.86 -16.87 16 4 C 0.06 1.54 6.08 41.52 0.25 1.79 16 5 C -0.03 -0.91 5.67 29.85 0.17 -0.74 16 6 C 0.08 3.09 4.68 86.30 0.40 3.49 16 7 N -0.53 -19.87 4.38 -900.80 -3.95 -23.82 16 8 C 0.20 9.80 4.59 85.56 0.39 10.19 16 9 C -0.51 -27.19 8.61 25.60 0.22 -26.97 16 10 H 0.06 3.30 7.66 -2.91 -0.02 3.28 16 11 C 0.00 0.23 5.46 84.66 0.46 0.70 16 12 N -0.93 -54.27 13.29 21.45 0.28 -53.98 16 13 Si 0.96 42.79 29.54 68.60 2.03 44.81 16 14 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 15 H -0.29 -12.79 7.11 99.48 0.71 -12.08 16 16 H -0.26 -11.25 7.11 99.48 0.71 -10.54 16 17 C 0.06 1.76 4.79 86.30 0.41 2.17 16 18 C -0.02 -0.42 5.77 28.79 0.17 -0.25 16 19 C 0.25 7.06 15.43 89.47 1.38 8.44 16 20 N -0.50 -16.57 18.52 19.98 0.37 -16.20 16 21 C -0.26 -5.88 11.07 66.78 0.74 -5.14 16 22 S 0.15 2.73 23.18 -56.49 -1.31 1.42 16 23 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.11 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.10 2.52 8.03 -2.39 -0.02 2.50 16 27 H 0.08 2.17 6.28 -2.39 -0.02 2.16 16 28 H 0.05 2.25 7.32 -2.39 -0.02 2.24 16 29 H 0.01 0.51 8.05 -2.38 -0.02 0.49 16 30 H -0.04 -2.46 8.00 -2.39 -0.02 -2.48 16 31 H 0.03 1.45 6.24 -2.39 -0.01 1.43 16 32 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 33 H 0.02 0.69 8.05 -2.39 -0.02 0.67 16 34 H 0.10 2.47 5.94 -2.39 -0.01 2.45 16 35 H 0.14 3.08 8.14 -2.39 -0.02 3.06 16 36 H 0.11 3.15 6.53 -2.39 -0.02 3.14 16 37 H 0.20 3.37 8.06 -2.91 -0.02 3.35 16 Total: -1.00 -66.91 331.61 2.64 -64.27 By element: Atomic # 1 Polarization: 4.64 SS G_CDS: 1.07 Total: 5.72 kcal Atomic # 6 Polarization: -11.34 SS G_CDS: 6.00 Total: -5.34 kcal Atomic # 7 Polarization: -105.73 SS G_CDS: -5.15 Total: -110.88 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.81 kcal Atomic # 16 Polarization: 2.73 SS G_CDS: -1.31 Total: 1.42 kcal Total: -66.91 2.64 -64.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000152917544.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.323 kcal (2) G-P(sol) polarization free energy of solvation -66.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds