Wall clock time and date at job start Tue Mar 31 2020 01:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46904 * 110.99737 * 2 1 4 4 C 1.52999 * 109.47201 * 293.95667 * 3 2 1 5 5 C 1.50703 * 109.47106 * 179.97438 * 4 3 2 6 6 N 1.29026 * 124.91438 * 89.69298 * 5 4 3 7 7 C 1.31789 * 117.11986 * 179.81411 * 6 5 4 8 8 C 1.33633 * 114.50060 * 0.47344 * 7 6 5 9 9 S 1.70974 * 124.91572 * 270.00347 * 5 4 3 10 10 C 1.46895 * 111.00342 * 123.95323 * 2 1 3 11 11 C 1.53007 * 109.47167 * 163.91475 * 10 2 1 12 12 H 1.09003 * 109.46515 * 57.07965 * 11 10 2 13 13 C 1.47199 * 109.46977 * 297.08187 * 11 10 2 14 14 N 3.63458 * 127.89807 * 205.07485 * 2 1 3 15 15 C 1.52995 * 109.47157 * 177.07754 * 11 10 2 16 16 C 1.50699 * 109.46971 * 185.00125 * 15 11 10 17 17 H 1.07995 * 120.00264 * 0.02562 * 16 15 11 18 18 C 1.37881 * 119.99942 * 179.72549 * 16 15 11 19 19 N 1.31518 * 119.99726 * 0.27523 * 18 16 15 20 20 Si 1.86801 * 120.00188 * 180.27734 * 18 16 15 21 21 H 1.48501 * 109.46982 * 59.99383 * 20 18 16 22 22 H 1.48496 * 109.47054 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.46915 * 300.00007 * 20 18 16 24 24 H 1.09007 * 109.47139 * 302.04436 * 1 2 3 25 25 H 1.09001 * 109.47596 * 62.04260 * 1 2 3 26 26 H 1.08998 * 109.46829 * 182.04802 * 1 2 3 27 27 H 1.09002 * 109.47161 * 53.95711 * 3 2 1 28 28 H 1.08997 * 109.46979 * 173.95787 * 3 2 1 29 29 H 1.08994 * 109.47285 * 299.99782 * 4 3 2 30 30 H 1.08997 * 109.47056 * 60.00167 * 4 3 2 31 31 H 1.07998 * 122.74651 * 180.23066 * 7 6 5 32 32 H 1.08008 * 126.03559 * 179.71288 * 8 7 6 33 33 H 1.09004 * 109.46935 * 43.91961 * 10 2 1 34 34 H 1.08997 * 109.47159 * 283.91634 * 10 2 1 35 35 H 1.09000 * 109.47400 * 65.00337 * 15 11 10 36 36 H 1.08995 * 109.47259 * 305.00101 * 15 11 10 37 37 H 0.96997 * 119.99303 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6313 2.0575 -1.3182 5 6 2.1708 3.4647 -1.3179 6 7 3.3402 3.8073 -1.7421 7 6 3.6533 5.0857 -1.6736 8 6 2.6985 5.8631 -1.1542 9 16 1.3247 4.8370 -0.7486 10 6 1.9955 -0.7659 1.1375 11 6 3.4723 -1.0859 0.8972 12 1 4.0243 -0.1589 0.7422 13 6 3.6016 -1.9392 -0.2953 14 7 3.7016 -2.5978 -1.2155 15 6 4.0396 -1.8201 2.1137 16 6 5.5211 -2.0264 1.9300 17 1 6.0092 -1.6693 1.0353 18 6 6.2544 -2.6658 2.9070 19 7 5.6601 -3.1002 3.9968 20 14 8.0921 -2.9147 2.6828 21 1 8.7569 -1.5944 2.5414 22 1 8.6438 -3.6220 3.8663 23 1 8.3366 -3.7252 1.4628 24 1 -0.3634 0.5453 0.8711 25 1 -0.3634 0.4818 -0.9077 26 1 -0.3633 -1.0270 0.0367 27 1 1.5611 1.9274 0.8310 28 1 3.0796 1.3445 0.1082 29 1 2.0656 1.5017 -2.1491 30 1 0.5471 2.0845 -1.4264 31 1 4.6051 5.4726 -2.0063 32 1 2.7586 6.9315 -1.0081 33 1 1.4346 -1.6949 1.2408 34 1 1.8950 -0.1774 2.0495 35 1 3.5480 -2.7875 2.2162 36 1 3.8640 -1.2264 3.0108 37 1 6.1761 -3.5496 4.6843 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000158032674.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:45:54 Heat of formation + Delta-G solvation = 64.559314 kcal Electronic energy + Delta-G solvation = -18711.677353 eV Core-core repulsion = 15808.759562 eV Total energy + Delta-G solvation = -2902.917791 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.84614 -38.25563 -35.81350 -33.71921 -32.85409 -31.48983 -29.17195 -27.45477 -26.02103 -24.55334 -23.03949 -21.71147 -20.97232 -20.05744 -18.16900 -16.79714 -16.44647 -15.81464 -15.52268 -15.11473 -14.81641 -14.52409 -14.15113 -14.09741 -13.27345 -13.17133 -12.93184 -12.60369 -12.32584 -12.02835 -11.90592 -11.71549 -11.66101 -11.46566 -11.17489 -11.05580 -10.99102 -10.62158 -10.51949 -10.10442 -9.76881 -9.59738 -9.50683 -9.21991 -9.06061 -8.43032 -8.26493 -6.07289 -4.10100 0.51766 1.17080 1.55572 2.68040 3.33663 3.37366 3.41783 3.74200 3.81013 3.91433 4.20686 4.44109 4.84080 4.93599 4.95291 4.97810 5.07563 5.25375 5.30130 5.30943 5.42014 5.44362 5.64998 5.72269 5.86382 5.90818 5.96024 5.99790 6.07259 6.38241 6.52514 7.09860 7.11107 7.44372 7.55059 7.59701 7.88248 8.25995 8.65004 8.94524 9.55271 11.03642 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.017730 B = 0.003957 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.846037 B = 7073.954812 C = 7873.289592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 N -0.544 5.544 3 C 0.059 3.941 4 C -0.043 4.043 5 C 0.063 3.937 6 N -0.471 5.471 7 C 0.042 3.958 8 C -0.265 4.265 9 S 0.109 5.891 10 C 0.063 3.937 11 C 0.010 3.990 12 H 0.099 0.901 13 C 0.258 3.742 14 N -0.480 5.480 15 C 0.032 3.968 16 C -0.526 4.526 17 H 0.056 0.944 18 C 0.063 3.937 19 N -0.893 5.893 20 Si 0.891 3.109 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.276 1.276 24 H 0.027 0.973 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.039 0.961 28 H 0.089 0.911 29 H 0.104 0.896 30 H 0.085 0.915 31 H 0.176 0.824 32 H 0.176 0.824 33 H 0.082 0.918 34 H 0.055 0.945 35 H 0.026 0.974 36 H 0.037 0.963 37 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.254 17.651 -6.269 22.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.268 5.268 3 C -0.071 4.071 4 C -0.084 4.084 5 C -0.216 4.216 6 N -0.185 5.185 7 C -0.109 4.109 8 C -0.404 4.404 9 S 0.362 5.638 10 C -0.065 4.065 11 C -0.012 4.012 12 H 0.117 0.883 13 C -0.059 4.059 14 N -0.157 5.157 15 C -0.007 4.007 16 C -0.564 4.564 17 H 0.075 0.925 18 C -0.139 4.139 19 N -0.531 5.531 20 Si 0.719 3.281 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.202 1.202 24 H 0.045 0.955 25 H 0.085 0.915 26 H 0.088 0.912 27 H 0.057 0.943 28 H 0.107 0.893 29 H 0.123 0.877 30 H 0.103 0.897 31 H 0.193 0.807 32 H 0.193 0.807 33 H 0.100 0.900 34 H 0.074 0.926 35 H 0.045 0.955 36 H 0.055 0.945 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -12.546 16.098 -7.695 21.812 hybrid contribution 1.689 0.980 0.794 2.108 sum -10.857 17.078 -6.901 21.381 Atomic orbital electron populations 1.22439 0.87551 1.02230 1.00435 1.61955 1.07626 1.12794 1.44439 1.22146 1.01996 0.88284 0.94645 1.20312 1.00559 0.86623 1.00943 1.27143 0.93039 1.00994 1.00378 1.66312 1.15945 1.17593 1.18625 1.21871 1.01037 0.87314 1.00629 1.27061 0.97507 1.05129 1.10720 1.83999 1.19848 1.00774 1.59133 1.22260 0.95129 0.98127 0.91034 1.19240 0.95061 0.96827 0.90072 0.88343 1.28793 0.91229 0.92768 0.93096 1.80973 1.10387 1.11343 1.13001 1.19165 0.95975 0.95699 0.89867 1.21110 0.92917 1.38054 1.04297 0.92535 1.24941 0.98563 0.95271 0.95112 1.69931 1.36101 1.38969 1.08140 0.86661 0.85352 0.78515 0.77618 1.20066 1.21203 1.20174 0.95494 0.91528 0.91210 0.94307 0.89264 0.87729 0.89650 0.80729 0.80675 0.89979 0.92639 0.95546 0.94523 0.92777 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.27 60.06 0.56 0.78 16 2 N -0.54 -7.08 4.36 -242.91 -1.06 -8.14 16 3 C 0.06 0.70 4.79 -3.82 -0.02 0.69 16 4 C -0.04 -0.46 5.72 -27.88 -0.16 -0.62 16 5 C 0.06 0.72 6.64 -13.46 -0.09 0.63 16 6 N -0.47 -6.14 10.54 -11.86 -0.13 -6.26 16 7 C 0.04 0.44 11.35 -19.18 -0.22 0.22 16 8 C -0.27 -2.28 11.36 29.12 0.33 -1.95 16 9 S 0.11 0.98 23.18 -107.50 -2.49 -1.52 16 10 C 0.06 0.93 4.36 -3.82 -0.02 0.91 16 11 C 0.01 0.19 2.22 -93.41 -0.21 -0.02 16 12 H 0.10 1.79 6.51 -51.93 -0.34 1.45 16 13 C 0.26 5.50 13.62 -20.76 -0.28 5.22 16 14 N -0.48 -11.10 18.54 42.15 0.78 -10.32 16 15 C 0.03 0.74 4.42 -27.89 -0.12 0.61 16 16 C -0.53 -14.17 8.60 -34.44 -0.30 -14.47 16 17 H 0.06 1.53 7.59 -52.49 -0.40 1.13 16 18 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 19 N -0.89 -25.68 13.29 55.43 0.74 -24.95 16 20 Si 0.89 21.56 29.54 -169.99 -5.02 16.54 16 21 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 24 H 0.03 0.24 8.13 -51.92 -0.42 -0.18 16 25 H 0.07 0.58 6.57 -51.93 -0.34 0.24 16 26 H 0.07 0.71 7.95 -51.93 -0.41 0.30 16 27 H 0.04 0.42 8.11 -51.93 -0.42 0.00 16 28 H 0.09 1.23 6.37 -51.93 -0.33 0.90 16 29 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.09 0.73 6.60 -51.93 -0.34 0.39 16 31 H 0.18 1.41 8.06 -52.49 -0.42 0.98 16 32 H 0.18 1.00 8.06 -52.48 -0.42 0.58 16 33 H 0.08 1.20 7.87 -51.93 -0.41 0.79 16 34 H 0.06 0.75 8.05 -51.93 -0.42 0.33 16 35 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 LS Contribution 331.17 15.07 4.99 4.99 Total: -1.00 -31.70 331.17 -7.89 -39.59 By element: Atomic # 1 Polarization: 1.50 SS G_CDS: -5.08 Total: -3.58 kcal Atomic # 6 Polarization: -5.74 SS G_CDS: -0.62 Total: -6.36 kcal Atomic # 7 Polarization: -50.00 SS G_CDS: 0.33 Total: -49.67 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Atomic # 16 Polarization: 0.98 SS G_CDS: -2.49 Total: -1.52 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.70 -7.89 -39.59 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158032674.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.152 kcal (2) G-P(sol) polarization free energy of solvation -31.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds