Wall clock time and date at job start Tue Mar 31 2020 01:45:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46904 * 110.99737 * 2 1 4 4 C 1.52999 * 109.47201 * 293.95667 * 3 2 1 5 5 C 1.50703 * 109.47106 * 179.97438 * 4 3 2 6 6 N 1.29026 * 124.91438 * 89.69298 * 5 4 3 7 7 C 1.31789 * 117.11986 * 179.81411 * 6 5 4 8 8 C 1.33633 * 114.50060 * 0.47344 * 7 6 5 9 9 S 1.70974 * 124.91572 * 270.00347 * 5 4 3 10 10 C 1.46895 * 111.00342 * 123.95323 * 2 1 3 11 11 C 1.53007 * 109.47167 * 163.91475 * 10 2 1 12 12 H 1.09003 * 109.46515 * 57.07965 * 11 10 2 13 13 C 1.47199 * 109.46977 * 297.08187 * 11 10 2 14 14 N 3.63458 * 127.89807 * 205.07485 * 2 1 3 15 15 C 1.52995 * 109.47157 * 177.07754 * 11 10 2 16 16 C 1.50699 * 109.46971 * 185.00125 * 15 11 10 17 17 H 1.07995 * 120.00264 * 0.02562 * 16 15 11 18 18 C 1.37881 * 119.99942 * 179.72549 * 16 15 11 19 19 N 1.31518 * 119.99726 * 0.27523 * 18 16 15 20 20 Si 1.86801 * 120.00188 * 180.27734 * 18 16 15 21 21 H 1.48501 * 109.46982 * 59.99383 * 20 18 16 22 22 H 1.48496 * 109.47054 * 179.97438 * 20 18 16 23 23 H 1.48496 * 109.46915 * 300.00007 * 20 18 16 24 24 H 1.09007 * 109.47139 * 302.04436 * 1 2 3 25 25 H 1.09001 * 109.47596 * 62.04260 * 1 2 3 26 26 H 1.08998 * 109.46829 * 182.04802 * 1 2 3 27 27 H 1.09002 * 109.47161 * 53.95711 * 3 2 1 28 28 H 1.08997 * 109.46979 * 173.95787 * 3 2 1 29 29 H 1.08994 * 109.47285 * 299.99782 * 4 3 2 30 30 H 1.08997 * 109.47056 * 60.00167 * 4 3 2 31 31 H 1.07998 * 122.74651 * 180.23066 * 7 6 5 32 32 H 1.08008 * 126.03559 * 179.71288 * 8 7 6 33 33 H 1.09004 * 109.46935 * 43.91961 * 10 2 1 34 34 H 1.08997 * 109.47159 * 283.91634 * 10 2 1 35 35 H 1.09000 * 109.47400 * 65.00337 * 15 11 10 36 36 H 1.08995 * 109.47259 * 305.00101 * 15 11 10 37 37 H 0.96997 * 119.99303 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6313 2.0575 -1.3182 5 6 2.1708 3.4647 -1.3179 6 7 3.3402 3.8073 -1.7421 7 6 3.6533 5.0857 -1.6736 8 6 2.6985 5.8631 -1.1542 9 16 1.3247 4.8370 -0.7486 10 6 1.9955 -0.7659 1.1375 11 6 3.4723 -1.0859 0.8972 12 1 4.0243 -0.1589 0.7422 13 6 3.6016 -1.9392 -0.2953 14 7 3.7016 -2.5978 -1.2155 15 6 4.0396 -1.8201 2.1137 16 6 5.5211 -2.0264 1.9300 17 1 6.0092 -1.6693 1.0353 18 6 6.2544 -2.6658 2.9070 19 7 5.6601 -3.1002 3.9968 20 14 8.0921 -2.9147 2.6828 21 1 8.7569 -1.5944 2.5414 22 1 8.6438 -3.6220 3.8663 23 1 8.3366 -3.7252 1.4628 24 1 -0.3634 0.5453 0.8711 25 1 -0.3634 0.4818 -0.9077 26 1 -0.3633 -1.0270 0.0367 27 1 1.5611 1.9274 0.8310 28 1 3.0796 1.3445 0.1082 29 1 2.0656 1.5017 -2.1491 30 1 0.5471 2.0845 -1.4264 31 1 4.6051 5.4726 -2.0063 32 1 2.7586 6.9315 -1.0081 33 1 1.4346 -1.6949 1.2408 34 1 1.8950 -0.1774 2.0495 35 1 3.5480 -2.7875 2.2162 36 1 3.8640 -1.2264 3.0108 37 1 6.1761 -3.5496 4.6843 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000158032674.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:45:52 Heat of formation + Delta-G solvation = 44.572880 kcal Electronic energy + Delta-G solvation = -18712.544030 eV Core-core repulsion = 15808.759562 eV Total energy + Delta-G solvation = -2903.784467 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.63326 -39.42854 -37.35424 -35.53490 -34.12815 -32.98365 -30.01067 -28.96048 -27.03598 -25.83219 -24.11077 -23.51540 -21.98489 -20.82212 -18.94787 -18.49832 -18.22332 -16.80133 -16.62374 -16.34116 -15.98406 -15.86725 -15.12997 -15.10321 -14.65704 -14.36147 -14.27554 -13.91586 -13.68538 -13.52623 -13.16364 -13.05274 -12.93930 -12.62627 -12.60489 -12.43735 -12.40726 -12.31517 -12.05977 -11.64365 -11.36559 -11.10858 -10.55390 -10.54792 -10.33359 -9.78444 -9.23498 -8.19627 -6.27602 -0.21893 0.46461 0.83007 1.40308 1.41873 1.49207 1.90397 2.08689 2.16212 2.41371 2.85939 3.15713 3.35092 3.41578 3.96110 4.07460 4.14441 4.28325 4.38449 4.43095 4.50590 4.59124 4.67112 4.71066 4.78740 4.82702 4.98809 5.03794 5.07869 5.16354 5.27064 5.46061 5.61722 5.78914 6.03919 6.17446 6.23171 6.83003 6.85741 6.94923 7.40712 8.91081 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.017730 B = 0.003957 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1578.846037 B = 7073.954812 C = 7873.289592 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.559 5.559 3 C 0.063 3.937 4 C -0.036 4.036 5 C 0.037 3.963 6 N -0.511 5.511 7 C 0.016 3.984 8 C -0.255 4.255 9 S 0.152 5.848 10 C 0.073 3.927 11 C 0.020 3.980 12 H 0.107 0.893 13 C 0.268 3.732 14 N -0.514 5.514 15 C 0.039 3.961 16 C -0.541 4.541 17 H 0.050 0.950 18 C 0.015 3.985 19 N -0.922 5.922 20 Si 0.946 3.054 21 H -0.265 1.265 22 H -0.279 1.279 23 H -0.281 1.281 24 H 0.043 0.957 25 H 0.082 0.918 26 H 0.068 0.932 27 H 0.054 0.946 28 H 0.065 0.935 29 H 0.083 0.917 30 H 0.109 0.891 31 H 0.189 0.811 32 H 0.206 0.794 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.004 0.996 36 H 0.035 0.965 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.232 19.536 -6.116 24.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 N -0.284 5.284 3 C -0.067 4.067 4 C -0.077 4.077 5 C -0.241 4.241 6 N -0.226 5.226 7 C -0.134 4.134 8 C -0.394 4.394 9 S 0.405 5.595 10 C -0.056 4.056 11 C -0.002 4.002 12 H 0.124 0.876 13 C -0.048 4.048 14 N -0.192 5.192 15 C 0.000 4.000 16 C -0.579 4.579 17 H 0.068 0.932 18 C -0.185 4.185 19 N -0.562 5.562 20 Si 0.771 3.229 21 H -0.190 1.190 22 H -0.204 1.204 23 H -0.207 1.207 24 H 0.061 0.939 25 H 0.101 0.899 26 H 0.086 0.914 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.101 0.899 30 H 0.127 0.873 31 H 0.206 0.794 32 H 0.223 0.777 33 H 0.101 0.899 34 H 0.090 0.910 35 H 0.023 0.977 36 H 0.053 0.947 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.536 17.993 -7.549 23.748 hybrid contribution 1.958 0.467 0.740 2.145 sum -11.578 18.460 -6.809 22.829 Atomic orbital electron populations 1.22510 0.85388 1.02709 1.02015 1.61870 1.09595 1.13304 1.43588 1.22085 1.00583 0.88048 0.95946 1.20223 1.01757 0.86339 0.99366 1.27185 0.93406 1.02014 1.01486 1.66299 1.17253 1.19286 1.19806 1.22161 1.02378 0.86922 1.01948 1.27488 0.96685 1.06497 1.08685 1.83779 1.18875 0.99045 1.57769 1.22078 0.92074 0.98967 0.92465 1.19194 0.98151 0.95813 0.87058 0.87575 1.29284 0.90121 0.92254 0.93126 1.80964 1.11727 1.12328 1.14170 1.18982 0.94174 0.95078 0.91763 1.21510 0.94927 1.37624 1.03873 0.93201 1.25670 1.02485 0.95272 0.95034 1.70017 1.37511 1.39804 1.08819 0.85790 0.80949 0.78734 0.77380 1.18984 1.20426 1.20688 0.93855 0.89906 0.91365 0.92757 0.91674 0.89856 0.87295 0.79415 0.77669 0.89870 0.90970 0.97723 0.94662 0.92648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.38 9.27 127.69 1.18 1.56 16 2 N -0.56 -13.72 4.36 -922.44 -4.02 -17.75 16 3 C 0.06 1.42 4.79 86.30 0.41 1.83 16 4 C -0.04 -0.73 5.72 29.85 0.17 -0.56 16 5 C 0.04 0.79 6.64 88.52 0.59 1.38 16 6 N -0.51 -13.18 10.54 -191.45 -2.02 -15.20 16 7 C 0.02 0.32 11.35 83.65 0.95 1.27 16 8 C -0.25 -3.77 11.36 66.77 0.76 -3.01 16 9 S 0.15 2.35 23.18 -56.49 -1.31 1.04 16 10 C 0.07 2.06 4.36 86.31 0.38 2.44 16 11 C 0.02 0.74 2.22 -12.60 -0.03 0.71 16 12 H 0.11 3.85 6.51 -2.39 -0.02 3.83 16 13 C 0.27 11.50 13.62 89.44 1.22 12.72 16 14 N -0.51 -24.01 18.54 20.01 0.37 -23.64 16 15 C 0.04 1.82 4.42 29.85 0.13 1.95 16 16 C -0.54 -29.39 8.60 25.60 0.22 -29.17 16 17 H 0.05 2.72 7.59 -2.91 -0.02 2.69 16 18 C 0.01 0.81 5.46 84.66 0.46 1.27 16 19 N -0.92 -53.28 13.29 21.45 0.28 -53.00 16 20 Si 0.95 44.19 29.54 68.60 2.03 46.21 16 21 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 22 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 23 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 24 H 0.04 0.65 8.13 -2.38 -0.02 0.63 16 25 H 0.08 1.21 6.57 -2.39 -0.02 1.19 16 26 H 0.07 1.25 7.95 -2.39 -0.02 1.23 16 27 H 0.05 1.06 8.11 -2.39 -0.02 1.04 16 28 H 0.06 1.78 6.37 -2.39 -0.02 1.77 16 29 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 30 H 0.11 1.63 6.60 -2.39 -0.02 1.61 16 31 H 0.19 2.89 8.06 -2.91 -0.02 2.86 16 32 H 0.21 1.62 8.06 -2.91 -0.02 1.60 16 33 H 0.08 2.34 7.87 -2.38 -0.02 2.32 16 34 H 0.07 1.81 8.05 -2.39 -0.02 1.79 16 35 H 0.00 0.22 8.14 -2.39 -0.02 0.20 16 36 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.26 14.53 8.31 -92.71 -0.77 13.76 16 Total: -1.00 -68.22 331.17 2.84 -65.38 By element: Atomic # 1 Polarization: 3.50 SS G_CDS: 1.07 Total: 4.56 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: 6.44 Total: -7.61 kcal Atomic # 7 Polarization: -104.20 SS G_CDS: -5.39 Total: -109.59 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.21 kcal Atomic # 16 Polarization: 2.35 SS G_CDS: -1.31 Total: 1.04 kcal Total: -68.22 2.84 -65.38 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000158032674.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.957 kcal (2) G-P(sol) polarization free energy of solvation -68.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds