Wall clock time and date at job start Tue Mar 31 2020 00:31:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31782 * 122.74720 * 2 1 4 4 C 1.29023 * 117.12440 * 179.97438 * 3 2 1 5 5 S 1.70978 * 110.16886 * 359.72601 * 4 3 2 6 6 C 1.33635 * 122.75048 * 179.97438 * 2 1 3 7 7 C 1.50699 * 126.03854 * 0.02562 * 6 2 1 8 8 N 1.46898 * 109.47241 * 89.99998 * 7 6 2 9 9 C 1.46903 * 110.99357 * 293.94935 * 8 7 6 10 10 C 1.46900 * 110.99882 * 170.00318 * 8 7 6 11 11 C 1.53002 * 109.46933 * 284.28230 * 10 8 7 12 12 H 1.09003 * 109.46852 * 54.43080 * 11 10 8 13 13 C 1.47194 * 109.47466 * 294.43379 * 11 10 8 14 14 N 6.33676 * 114.80107 * 212.93831 * 2 1 3 15 15 C 1.52994 * 109.47227 * 174.43021 * 11 10 8 16 16 C 1.50703 * 109.47125 * 185.00596 * 15 11 10 17 17 H 1.07998 * 120.00336 * 359.97438 * 16 15 11 18 18 C 1.37883 * 120.00107 * 180.02562 * 16 15 11 19 19 N 1.31521 * 119.99707 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00019 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47167 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.46928 * 119.99860 * 20 18 16 23 23 H 1.48503 * 109.47044 * 239.99912 * 20 18 16 24 24 H 1.09004 * 109.47248 * 270.00076 * 1 2 3 25 25 H 1.08991 * 109.47345 * 30.00297 * 1 2 3 26 26 H 1.09006 * 109.46771 * 150.00109 * 1 2 3 27 27 H 1.08003 * 124.91650 * 179.97438 * 4 3 2 28 28 H 1.09004 * 109.46817 * 209.99550 * 7 6 2 29 29 H 1.08998 * 109.47131 * 329.99302 * 7 6 2 30 30 H 1.09004 * 109.47149 * 61.76699 * 9 8 7 31 31 H 1.09002 * 109.46848 * 181.76258 * 9 8 7 32 32 H 1.08992 * 109.47446 * 301.76162 * 9 8 7 33 33 H 1.08999 * 109.47521 * 44.28927 * 10 8 7 34 34 H 1.09004 * 109.47200 * 164.28916 * 10 8 7 35 35 H 1.09008 * 109.47460 * 305.00142 * 15 11 10 36 36 H 1.08994 * 109.47130 * 65.00162 * 15 11 10 37 37 H 0.96996 * 119.99981 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5039 0.9820 0.0005 5 16 3.9333 -0.6730 0.0088 6 6 2.2300 -1.1239 0.0005 7 6 1.6847 -2.5288 0.0006 8 7 1.5081 -2.9856 -1.3843 9 6 0.4662 -2.2065 -2.0667 10 6 1.2058 -4.4225 -1.4302 11 6 2.4849 -5.2211 -1.1714 12 1 2.9346 -4.8932 -0.2341 13 6 3.4337 -4.9994 -2.2747 14 7 4.1651 -4.8277 -3.1277 15 6 2.1467 -6.7105 -1.0812 16 6 3.3838 -7.4846 -0.7049 17 1 4.3178 -6.9663 -0.5464 18 6 3.3233 -8.8549 -0.5640 19 7 2.1859 -9.4863 -0.7575 20 14 4.8568 -9.8145 -0.0982 21 1 5.9977 -8.8775 0.0609 22 1 4.6224 -10.5317 1.1808 23 1 5.1693 -10.7973 -1.1668 24 1 -0.3634 0.0000 1.0277 25 1 -0.3633 0.8899 -0.5138 26 1 -0.3633 -0.8901 -0.5139 27 1 4.2059 1.8027 0.0002 28 1 2.3829 -3.1894 0.5148 29 1 0.7235 -2.5455 0.5142 30 1 0.7639 -1.1586 -2.1069 31 1 0.3340 -2.5858 -3.0800 32 1 -0.4721 -2.2969 -1.5196 33 1 0.4664 -4.6629 -0.6663 34 1 0.8098 -4.6793 -2.4128 35 1 1.3780 -6.8634 -0.3235 36 1 1.7797 -7.0589 -2.0465 37 1 2.1432 -10.4502 -0.6580 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171988805.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:48 Heat of formation + Delta-G solvation = 68.442569 kcal Electronic energy + Delta-G solvation = -19091.900152 eV Core-core repulsion = 16189.150752 eV Total energy + Delta-G solvation = -2902.749400 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 2.08 seconds Orbital eigenvalues (eV) -40.12751 -38.09557 -35.79467 -33.70499 -32.49806 -31.34585 -29.58562 -27.42059 -25.82536 -25.01558 -23.85365 -21.79547 -21.49797 -18.88960 -18.17379 -16.87205 -16.53191 -16.00543 -15.56785 -15.12406 -14.42447 -14.37541 -14.19373 -13.63980 -13.35578 -13.02617 -12.76854 -12.65629 -12.50078 -12.31590 -12.12279 -11.95271 -11.62820 -11.38065 -11.23252 -11.09791 -11.04163 -10.72591 -10.52701 -10.23514 -9.70592 -9.58011 -9.32430 -9.24083 -8.83802 -8.48086 -8.27767 -6.11927 -4.14939 0.62976 1.33782 1.74469 2.67002 3.27067 3.35597 3.40174 3.71346 3.82270 4.00213 4.13558 4.39945 4.73942 4.86408 4.90656 5.03993 5.19002 5.26534 5.30463 5.33731 5.44928 5.46061 5.59345 5.65594 5.73315 5.83043 5.90455 5.93960 6.17396 6.29772 6.44766 7.00016 7.04063 7.39175 7.49830 7.62893 7.83616 8.20792 8.57961 8.90074 9.50850 10.99016 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.024720 B = 0.004097 C = 0.003851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.398804 B = 6832.868049 C = 7269.572925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.057 3.943 3 N -0.471 5.471 4 C 0.004 3.996 5 S 0.149 5.851 6 C -0.202 4.202 7 C 0.125 3.875 8 N -0.541 5.541 9 C 0.021 3.979 10 C 0.061 3.939 11 C 0.012 3.988 12 H 0.098 0.902 13 C 0.255 3.745 14 N -0.479 5.479 15 C 0.031 3.969 16 C -0.525 4.525 17 H 0.057 0.943 18 C 0.063 3.937 19 N -0.892 5.892 20 Si 0.891 3.109 21 H -0.272 1.272 22 H -0.282 1.282 23 H -0.284 1.284 24 H 0.072 0.928 25 H 0.073 0.927 26 H 0.083 0.917 27 H 0.196 0.804 28 H 0.095 0.905 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.031 0.969 33 H 0.059 0.941 34 H 0.083 0.917 35 H 0.038 0.962 36 H 0.026 0.974 37 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.449 17.899 3.911 18.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.077 4.077 3 N -0.185 5.185 4 C -0.293 4.293 5 S 0.403 5.597 6 C -0.324 4.324 7 C -0.004 4.004 8 N -0.265 5.265 9 C -0.127 4.127 10 C -0.067 4.067 11 C -0.010 4.010 12 H 0.115 0.885 13 C -0.062 4.062 14 N -0.155 5.155 15 C -0.008 4.008 16 C -0.563 4.563 17 H 0.076 0.924 18 C -0.139 4.139 19 N -0.530 5.530 20 Si 0.718 3.282 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.210 1.210 24 H 0.091 0.909 25 H 0.092 0.908 26 H 0.102 0.898 27 H 0.212 0.788 28 H 0.113 0.887 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.087 0.913 32 H 0.050 0.950 33 H 0.078 0.922 34 H 0.101 0.899 35 H 0.056 0.944 36 H 0.045 0.955 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -2.213 18.097 2.379 18.386 hybrid contribution -0.897 -0.707 0.964 1.495 sum -3.110 17.390 3.343 17.979 Atomic orbital electron populations 1.20666 0.87452 1.03871 1.02990 1.20181 0.98059 0.86255 1.03165 1.66173 1.05122 1.31663 1.15540 1.28241 0.95310 1.00593 1.05205 1.84282 1.06954 1.02347 1.66157 1.25626 0.95244 1.00249 1.11288 1.20516 1.00281 0.89142 0.90504 1.61991 1.45941 1.04166 1.14417 1.22616 0.92141 0.98968 0.99007 1.22302 0.96539 0.85073 1.02802 1.19225 0.89806 1.00304 0.91708 0.88453 1.28859 0.93168 0.90418 0.93714 1.81015 1.10995 1.11647 1.11881 1.19184 0.97945 0.85003 0.98652 1.21172 0.95434 0.92093 1.47646 0.92443 1.24947 0.96042 0.97818 0.95113 1.69946 1.24908 1.08902 1.49276 0.86547 0.83396 0.80092 0.78137 1.19645 1.20851 1.20958 0.90913 0.90778 0.89845 0.78758 0.88689 0.92122 0.91270 0.91255 0.95035 0.92247 0.89902 0.94429 0.95534 0.92846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.83 9.21 36.01 0.33 -0.50 16 2 C 0.06 0.67 5.90 -84.23 -0.50 0.17 16 3 N -0.47 -5.88 10.53 -11.90 -0.13 -6.00 16 4 C 0.00 0.04 12.23 51.58 0.63 0.67 16 5 S 0.15 1.69 23.22 -107.50 -2.50 -0.81 16 6 C -0.20 -2.41 5.50 -35.92 -0.20 -2.61 16 7 C 0.13 1.45 4.98 -4.98 -0.02 1.42 16 8 N -0.54 -6.98 4.40 -244.37 -1.07 -8.05 16 9 C 0.02 0.22 7.90 60.07 0.47 0.70 16 10 C 0.06 0.86 4.36 -3.82 -0.02 0.84 16 11 C 0.01 0.21 2.27 -93.41 -0.21 0.00 16 12 H 0.10 1.64 6.65 -51.93 -0.35 1.29 16 13 C 0.26 5.27 13.68 -20.74 -0.28 4.99 16 14 N -0.48 -10.80 18.54 42.18 0.78 -10.02 16 15 C 0.03 0.69 4.42 -27.88 -0.12 0.57 16 16 C -0.53 -13.74 8.60 -34.44 -0.30 -14.04 16 17 H 0.06 1.51 7.59 -52.49 -0.40 1.11 16 18 C 0.06 1.71 5.46 -17.81 -0.10 1.61 16 19 N -0.89 -25.15 13.29 55.43 0.74 -24.42 16 20 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 21 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.08 0.69 3.87 -51.93 -0.20 0.49 16 27 H 0.20 1.39 8.06 -52.48 -0.42 0.97 16 28 H 0.09 1.13 6.56 -51.93 -0.34 0.79 16 29 H 0.06 0.61 7.40 -51.93 -0.38 0.22 16 30 H 0.07 0.78 5.82 -51.93 -0.30 0.47 16 31 H 0.07 0.76 7.94 -51.93 -0.41 0.34 16 32 H 0.03 0.29 6.75 -51.93 -0.35 -0.06 16 33 H 0.06 0.74 8.00 -51.93 -0.42 0.32 16 34 H 0.08 1.17 7.80 -51.93 -0.40 0.76 16 35 H 0.04 0.85 8.14 -51.92 -0.42 0.43 16 36 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 322.65 15.07 4.86 4.86 Total: -1.00 -31.16 322.65 -7.45 -38.61 By element: Atomic # 1 Polarization: 0.76 SS G_CDS: -4.80 Total: -4.04 kcal Atomic # 6 Polarization: -5.87 SS G_CDS: -0.31 Total: -6.18 kcal Atomic # 7 Polarization: -48.81 SS G_CDS: 0.32 Total: -48.49 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Atomic # 16 Polarization: 1.69 SS G_CDS: -2.50 Total: -0.81 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -31.16 -7.45 -38.61 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171988805.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.053 kcal (2) G-P(sol) polarization free energy of solvation -31.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.08 seconds