Wall clock time and date at job start Tue Mar 31 2020 00:31:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.31782 * 122.74720 * 2 1 4 4 C 1.29023 * 117.12440 * 179.97438 * 3 2 1 5 5 S 1.70978 * 110.16886 * 359.72601 * 4 3 2 6 6 C 1.33635 * 122.75048 * 179.97438 * 2 1 3 7 7 C 1.50699 * 126.03854 * 0.02562 * 6 2 1 8 8 N 1.46898 * 109.47241 * 89.99998 * 7 6 2 9 9 C 1.46903 * 110.99357 * 293.94935 * 8 7 6 10 10 C 1.46900 * 110.99882 * 170.00318 * 8 7 6 11 11 C 1.53002 * 109.46933 * 284.28230 * 10 8 7 12 12 H 1.09003 * 109.46852 * 54.43080 * 11 10 8 13 13 C 1.47194 * 109.47466 * 294.43379 * 11 10 8 14 14 N 6.33676 * 114.80107 * 212.93831 * 2 1 3 15 15 C 1.52994 * 109.47227 * 174.43021 * 11 10 8 16 16 C 1.50703 * 109.47125 * 185.00596 * 15 11 10 17 17 H 1.07998 * 120.00336 * 359.97438 * 16 15 11 18 18 C 1.37883 * 120.00107 * 180.02562 * 16 15 11 19 19 N 1.31521 * 119.99707 * 359.97438 * 18 16 15 20 20 Si 1.86795 * 120.00019 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47167 * 359.97438 * 20 18 16 22 22 H 1.48500 * 109.46928 * 119.99860 * 20 18 16 23 23 H 1.48503 * 109.47044 * 239.99912 * 20 18 16 24 24 H 1.09004 * 109.47248 * 270.00076 * 1 2 3 25 25 H 1.08991 * 109.47345 * 30.00297 * 1 2 3 26 26 H 1.09006 * 109.46771 * 150.00109 * 1 2 3 27 27 H 1.08003 * 124.91650 * 179.97438 * 4 3 2 28 28 H 1.09004 * 109.46817 * 209.99550 * 7 6 2 29 29 H 1.08998 * 109.47131 * 329.99302 * 7 6 2 30 30 H 1.09004 * 109.47149 * 61.76699 * 9 8 7 31 31 H 1.09002 * 109.46848 * 181.76258 * 9 8 7 32 32 H 1.08992 * 109.47446 * 301.76162 * 9 8 7 33 33 H 1.08999 * 109.47521 * 44.28927 * 10 8 7 34 34 H 1.09004 * 109.47200 * 164.28916 * 10 8 7 35 35 H 1.09008 * 109.47460 * 305.00142 * 15 11 10 36 36 H 1.08994 * 109.47130 * 65.00162 * 15 11 10 37 37 H 0.96996 * 119.99981 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5039 0.9820 0.0005 5 16 3.9333 -0.6730 0.0088 6 6 2.2300 -1.1239 0.0005 7 6 1.6847 -2.5288 0.0006 8 7 1.5081 -2.9856 -1.3843 9 6 0.4662 -2.2065 -2.0667 10 6 1.2058 -4.4225 -1.4302 11 6 2.4849 -5.2211 -1.1714 12 1 2.9346 -4.8932 -0.2341 13 6 3.4337 -4.9994 -2.2747 14 7 4.1651 -4.8277 -3.1277 15 6 2.1467 -6.7105 -1.0812 16 6 3.3838 -7.4846 -0.7049 17 1 4.3178 -6.9663 -0.5464 18 6 3.3233 -8.8549 -0.5640 19 7 2.1859 -9.4863 -0.7575 20 14 4.8568 -9.8145 -0.0982 21 1 5.9977 -8.8775 0.0609 22 1 4.6224 -10.5317 1.1808 23 1 5.1693 -10.7973 -1.1668 24 1 -0.3634 0.0000 1.0277 25 1 -0.3633 0.8899 -0.5138 26 1 -0.3633 -0.8901 -0.5139 27 1 4.2059 1.8027 0.0002 28 1 2.3829 -3.1894 0.5148 29 1 0.7235 -2.5455 0.5142 30 1 0.7639 -1.1586 -2.1069 31 1 0.3340 -2.5858 -3.0800 32 1 -0.4721 -2.2969 -1.5196 33 1 0.4664 -4.6629 -0.6663 34 1 0.8098 -4.6793 -2.4128 35 1 1.3780 -6.8634 -0.3235 36 1 1.7797 -7.0589 -2.0465 37 1 2.1432 -10.4502 -0.6580 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171988805.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:38 Heat of formation + Delta-G solvation = 48.752165 kcal Electronic energy + Delta-G solvation = -19092.753992 eV Core-core repulsion = 16189.150752 eV Total energy + Delta-G solvation = -2903.603240 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 11.73 seconds Orbital eigenvalues (eV) -40.98538 -39.25581 -37.26964 -35.49784 -33.88710 -32.63520 -30.39253 -28.95902 -26.73866 -26.14929 -25.01483 -23.55660 -22.54767 -19.72985 -19.05604 -18.53413 -18.17393 -16.90174 -16.75141 -16.52903 -15.88279 -15.49552 -15.13899 -14.68523 -14.48342 -14.36274 -14.28099 -13.74707 -13.56942 -13.45966 -13.30239 -13.17057 -13.01576 -12.98086 -12.65693 -12.48964 -12.37488 -12.26557 -11.96327 -11.74676 -11.36684 -11.10432 -10.57371 -10.53699 -10.22023 -9.68785 -9.20064 -8.18285 -6.25731 -0.21279 0.50448 0.90310 1.39512 1.43308 1.53102 1.82043 2.08350 2.16237 2.42644 3.01473 3.17719 3.37600 3.38235 3.87241 4.07195 4.12485 4.29312 4.37034 4.47336 4.56283 4.60115 4.71261 4.76546 4.78943 4.87242 4.94774 4.99339 5.02203 5.08836 5.42031 5.49267 5.64055 5.80973 6.01889 6.08718 6.23908 6.78508 6.85371 6.95787 7.42875 8.92703 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.024720 B = 0.004097 C = 0.003851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.398804 B = 6832.868049 C = 7269.572925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.052 3.948 3 N -0.497 5.497 4 C 0.016 3.984 5 S 0.127 5.873 6 C -0.216 4.216 7 C 0.126 3.874 8 N -0.557 5.557 9 C 0.024 3.976 10 C 0.072 3.928 11 C 0.021 3.979 12 H 0.113 0.887 13 C 0.266 3.734 14 N -0.516 5.516 15 C 0.038 3.962 16 C -0.537 4.537 17 H 0.052 0.948 18 C 0.014 3.986 19 N -0.922 5.922 20 Si 0.945 3.055 21 H -0.270 1.270 22 H -0.273 1.273 23 H -0.286 1.286 24 H 0.083 0.917 25 H 0.075 0.925 26 H 0.092 0.908 27 H 0.225 0.775 28 H 0.089 0.911 29 H 0.081 0.919 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.055 0.945 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.039 0.961 36 H 0.002 0.998 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.915 18.872 4.739 20.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.080 4.080 3 N -0.211 5.211 4 C -0.281 4.281 5 S 0.381 5.619 6 C -0.338 4.338 7 C -0.003 4.003 8 N -0.281 5.281 9 C -0.124 4.124 10 C -0.056 4.056 11 C 0.000 4.000 12 H 0.130 0.870 13 C -0.050 4.050 14 N -0.193 5.193 15 C -0.001 4.001 16 C -0.575 4.575 17 H 0.070 0.930 18 C -0.185 4.185 19 N -0.562 5.562 20 Si 0.771 3.229 21 H -0.195 1.195 22 H -0.198 1.198 23 H -0.212 1.212 24 H 0.102 0.898 25 H 0.094 0.906 26 H 0.111 0.889 27 H 0.242 0.758 28 H 0.107 0.893 29 H 0.099 0.901 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.073 0.927 33 H 0.100 0.900 34 H 0.100 0.900 35 H 0.057 0.943 36 H 0.021 0.979 37 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -2.683 19.081 3.213 19.535 hybrid contribution -0.733 -0.942 0.704 1.386 sum -3.416 18.139 3.917 18.869 Atomic orbital electron populations 1.20735 0.85870 1.04380 1.03828 1.20561 0.99194 0.86000 1.02290 1.66244 1.05889 1.32157 1.16827 1.28770 0.95301 1.00831 1.03246 1.84351 1.07524 1.03454 1.66611 1.25671 0.95160 1.00484 1.12456 1.20538 1.01127 0.88787 0.89826 1.61870 1.47199 1.03497 1.15579 1.22605 0.92541 0.98247 0.98974 1.22117 0.94449 0.85548 1.03517 1.19206 0.91257 0.98116 0.91471 0.86977 1.29416 0.92685 0.89406 0.93539 1.81011 1.12327 1.12813 1.13194 1.19002 0.96461 0.87555 0.97078 1.21572 0.96485 0.92624 1.46827 0.92995 1.25658 0.98445 0.98966 0.95440 1.70028 1.26488 1.09185 1.50535 0.85697 0.80397 0.78766 0.78042 1.19484 1.19788 1.21225 0.89835 0.90641 0.88919 0.75848 0.89309 0.90096 0.91620 0.91574 0.92719 0.90008 0.90044 0.94306 0.97922 0.92743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.43 9.21 71.24 0.66 -0.77 16 2 C 0.05 1.14 5.90 41.52 0.25 1.38 16 3 N -0.50 -11.59 10.53 -191.55 -2.02 -13.60 16 4 C 0.02 0.31 12.23 130.66 1.60 1.91 16 5 S 0.13 2.75 23.22 -56.49 -1.31 1.44 16 6 C -0.22 -4.81 5.50 24.64 0.14 -4.68 16 7 C 0.13 2.66 4.98 85.56 0.43 3.08 16 8 N -0.56 -13.24 4.40 -927.04 -4.08 -17.32 16 9 C 0.02 0.46 7.90 127.69 1.01 1.47 16 10 C 0.07 1.88 4.36 86.30 0.38 2.26 16 11 C 0.02 0.74 2.27 -12.60 -0.03 0.71 16 12 H 0.11 3.60 6.65 -2.39 -0.02 3.58 16 13 C 0.27 10.86 13.68 89.43 1.22 12.08 16 14 N -0.52 -23.27 18.54 20.01 0.37 -22.90 16 15 C 0.04 1.68 4.42 29.85 0.13 1.82 16 16 C -0.54 -27.95 8.60 25.60 0.22 -27.73 16 17 H 0.05 2.70 7.59 -2.91 -0.02 2.68 16 18 C 0.01 0.75 5.46 84.66 0.46 1.21 16 19 N -0.92 -52.04 13.29 21.45 0.28 -51.76 16 20 Si 0.94 42.98 29.54 68.60 2.03 45.01 16 21 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 22 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 23 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 24 H 0.08 1.16 8.14 -2.38 -0.02 1.14 16 25 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 26 H 0.09 1.27 3.87 -2.38 -0.01 1.27 16 27 H 0.23 2.70 8.06 -2.91 -0.02 2.68 16 28 H 0.09 1.96 6.56 -2.39 -0.02 1.94 16 29 H 0.08 1.36 7.40 -2.39 -0.02 1.34 16 30 H 0.07 1.34 5.82 -2.38 -0.01 1.33 16 31 H 0.07 1.32 7.94 -2.39 -0.02 1.30 16 32 H 0.05 0.81 6.75 -2.39 -0.02 0.79 16 33 H 0.08 1.79 8.00 -2.39 -0.02 1.77 16 34 H 0.08 2.16 7.80 -2.39 -0.02 2.14 16 35 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 36 H 0.00 0.12 8.14 -2.39 -0.02 0.10 16 37 H 0.26 14.12 8.31 -92.71 -0.77 13.35 16 Total: -1.00 -65.85 322.65 2.81 -63.03 By element: Atomic # 1 Polarization: 2.27 SS G_CDS: 1.08 Total: 3.35 kcal Atomic # 6 Polarization: -13.71 SS G_CDS: 6.46 Total: -7.25 kcal Atomic # 7 Polarization: -100.14 SS G_CDS: -5.44 Total: -105.58 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Atomic # 16 Polarization: 2.75 SS G_CDS: -1.31 Total: 1.44 kcal Total: -65.85 2.81 -63.03 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171988805.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.787 kcal (2) G-P(sol) polarization free energy of solvation -65.847 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.034 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 11.73 seconds