Wall clock time and date at job start Tue Mar 31 2020 00:31:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31786 * 122.74951 * 2 1 4 4 C 1.29028 * 117.12685 * 179.97438 * 3 2 1 5 5 S 1.70976 * 110.16563 * 359.72743 * 4 3 2 6 6 C 1.33633 * 122.75169 * 179.97438 * 2 1 3 7 7 C 1.50700 * 126.03649 * 0.02562 * 6 2 1 8 8 N 1.46903 * 109.47051 * 89.99935 * 7 6 2 9 9 C 1.46905 * 111.00105 * 66.04595 * 8 7 6 10 10 C 1.46900 * 111.00097 * 189.99990 * 8 7 6 11 11 C 1.53001 * 109.47184 * 75.67506 * 10 8 7 12 12 H 1.09000 * 109.47187 * 304.73419 * 11 10 8 13 13 C 1.47206 * 109.47058 * 64.72842 * 11 10 8 14 14 N 5.12220 * 51.39818 * 230.94713 * 2 1 3 15 15 C 1.52993 * 109.47231 * 184.73009 * 11 10 8 16 16 C 1.50707 * 109.47127 * 175.00229 * 15 11 10 17 17 H 1.07993 * 119.99599 * 359.97438 * 16 15 11 18 18 C 1.37870 * 119.99840 * 179.72616 * 16 15 11 19 19 N 1.31518 * 120.00157 * 180.27696 * 18 16 15 20 20 Si 1.86802 * 120.00385 * 0.27100 * 18 16 15 21 21 H 1.48500 * 109.47068 * 90.00138 * 20 18 16 22 22 H 1.48499 * 109.47475 * 210.00646 * 20 18 16 23 23 H 1.48510 * 109.46898 * 330.00275 * 20 18 16 24 24 H 1.08993 * 109.47566 * 270.00370 * 1 2 3 25 25 H 1.09007 * 109.47058 * 30.00531 * 1 2 3 26 26 H 1.08999 * 109.46832 * 150.00149 * 1 2 3 27 27 H 1.08004 * 124.91789 * 179.97438 * 4 3 2 28 28 H 1.08996 * 109.47389 * 329.99679 * 7 6 2 29 29 H 1.09002 * 109.47028 * 209.99175 * 7 6 2 30 30 H 1.09002 * 109.46703 * 187.98282 * 9 8 7 31 31 H 1.08997 * 109.46996 * 307.97561 * 9 8 7 32 32 H 1.08995 * 109.47325 * 67.97850 * 9 8 7 33 33 H 1.09000 * 109.47095 * 315.67810 * 10 8 7 34 34 H 1.08996 * 109.47379 * 195.67638 * 10 8 7 35 35 H 1.08998 * 109.47320 * 54.99777 * 15 11 10 36 36 H 1.09003 * 109.47121 * 294.99702 * 15 11 10 37 37 H 0.96999 * 120.00220 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5039 0.9820 0.0005 5 16 3.9333 -0.6730 0.0087 6 6 2.2299 -1.1239 0.0005 7 6 1.6847 -2.5288 0.0006 8 7 1.5080 -2.9855 -1.3844 9 6 2.8031 -3.1134 -2.0659 10 6 0.7618 -4.2501 -1.4306 11 6 -0.7212 -3.9769 -1.1720 12 1 -0.8333 -3.4446 -0.2274 13 6 -1.2669 -3.1560 -2.2654 14 7 -1.6888 -2.5220 -3.1086 15 6 -1.4798 -5.3037 -1.1029 16 6 -2.9157 -5.0425 -0.7271 17 1 -3.2532 -4.0313 -0.5544 18 6 -3.7995 -6.0940 -0.6088 19 7 -5.0539 -5.8657 -0.2862 20 14 -3.2155 -7.8432 -0.9070 21 1 -2.7341 -8.4287 0.3699 22 1 -4.3404 -8.6579 -1.4323 23 1 -2.1076 -7.8333 -1.8959 24 1 -0.3634 0.0001 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 4.2060 1.8027 0.0002 28 1 0.7234 -2.5454 0.5141 29 1 2.3828 -3.1894 0.5147 30 1 2.6383 -3.3143 -3.1245 31 1 3.3649 -2.1859 -1.9554 32 1 3.3670 -3.9346 -1.6236 33 1 1.1452 -4.9263 -0.6666 34 1 0.8812 -4.7067 -2.4131 35 1 -1.0192 -5.9470 -0.3532 36 1 -1.4424 -5.7947 -2.0754 37 1 -5.6756 -6.6055 -0.2026 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171988807.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:54 Heat of formation + Delta-G solvation = 69.241754 kcal Electronic energy + Delta-G solvation = -19257.585622 eV Core-core repulsion = 16354.870877 eV Total energy + Delta-G solvation = -2902.714745 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.04197 -38.20505 -35.82582 -33.70736 -32.46868 -31.71112 -29.10689 -27.90478 -26.11258 -24.86121 -23.94956 -21.62426 -21.43122 -18.87885 -18.23163 -16.94667 -16.93013 -16.00709 -15.36882 -15.04975 -14.78115 -14.33336 -14.09046 -13.62561 -13.35008 -13.18573 -12.83897 -12.52256 -12.48569 -12.42490 -12.20453 -11.85781 -11.79580 -11.76697 -11.36343 -11.23643 -11.14205 -10.76401 -10.41694 -9.96667 -9.80064 -9.76675 -9.40352 -9.32924 -8.79505 -8.63414 -8.37163 -6.12148 -4.13010 0.58052 1.23143 1.60442 2.70951 3.23904 3.33366 3.33588 3.67298 3.77294 3.94858 4.14150 4.36522 4.70582 4.76324 4.91368 5.04353 5.14464 5.22559 5.26365 5.42026 5.45279 5.60129 5.68098 5.71815 5.79422 5.83097 5.84390 5.95155 6.14122 6.24554 6.34904 6.88173 6.92412 6.95008 7.10301 7.61617 7.63396 8.38860 8.54060 8.91533 9.47624 11.00894 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.027198 B = 0.004229 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.250615 B = 6619.629464 C = 6995.616003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.082 3.918 3 N -0.467 5.467 4 C 0.018 3.982 5 S 0.100 5.900 6 C -0.206 4.206 7 C 0.127 3.873 8 N -0.539 5.539 9 C 0.020 3.980 10 C 0.059 3.941 11 C 0.021 3.979 12 H 0.104 0.896 13 C 0.252 3.748 14 N -0.469 5.469 15 C -0.006 4.006 16 C -0.528 4.528 17 H 0.075 0.925 18 C 0.072 3.928 19 N -0.896 5.896 20 Si 0.876 3.124 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.264 1.264 24 H 0.076 0.924 25 H 0.073 0.927 26 H 0.085 0.915 27 H 0.196 0.804 28 H 0.105 0.895 29 H 0.050 0.950 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.028 0.972 33 H 0.059 0.941 34 H 0.083 0.917 35 H 0.032 0.968 36 H 0.025 0.975 37 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.767 6.559 2.752 21.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.050 4.050 3 N -0.181 5.181 4 C -0.280 4.280 5 S 0.353 5.647 6 C -0.327 4.327 7 C -0.003 4.003 8 N -0.263 5.263 9 C -0.128 4.128 10 C -0.070 4.070 11 C -0.001 4.001 12 H 0.122 0.878 13 C -0.066 4.066 14 N -0.145 5.145 15 C -0.045 4.045 16 C -0.565 4.565 17 H 0.093 0.907 18 C -0.130 4.130 19 N -0.534 5.534 20 Si 0.703 3.297 21 H -0.201 1.201 22 H -0.213 1.213 23 H -0.189 1.189 24 H 0.094 0.906 25 H 0.092 0.908 26 H 0.104 0.896 27 H 0.213 0.787 28 H 0.123 0.877 29 H 0.068 0.932 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.047 0.953 33 H 0.077 0.923 34 H 0.101 0.899 35 H 0.050 0.950 36 H 0.044 0.956 37 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 20.430 7.822 1.269 21.913 hybrid contribution 0.009 -1.635 0.604 1.743 sum 20.439 6.187 1.873 21.437 Atomic orbital electron populations 1.20441 0.86564 1.04262 1.02952 1.20284 0.98453 0.85856 1.00411 1.66208 1.04959 1.31835 1.15072 1.28254 0.95295 0.99761 1.04735 1.83909 1.07984 1.04174 1.68631 1.25551 0.94084 1.00538 1.12548 1.20547 1.01179 0.88160 0.90385 1.61985 1.18973 1.30774 1.14555 1.22492 0.90038 1.00766 0.99554 1.22316 0.92597 0.89294 1.02753 1.18970 0.91973 0.96544 0.92571 0.87828 1.28663 0.91727 0.92431 0.93729 1.81023 1.10336 1.11378 1.11771 1.19650 0.96496 0.90438 0.97892 1.21011 0.91805 0.95762 1.47966 0.90717 1.24981 0.94689 0.99061 0.94301 1.69903 1.03618 1.32107 1.47788 0.86839 0.78812 0.84981 0.79047 1.20063 1.21313 1.18870 0.90555 0.90762 0.89644 0.78695 0.87739 0.93158 0.91066 0.91513 0.95336 0.92321 0.89874 0.94957 0.95644 0.92554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.08 9.82 36.00 0.35 -0.73 16 2 C 0.08 1.08 6.74 -84.23 -0.57 0.51 16 3 N -0.47 -6.15 10.53 -11.90 -0.13 -6.28 16 4 C 0.02 0.18 12.23 51.58 0.63 0.81 16 5 S 0.10 0.93 21.67 -107.50 -2.33 -1.40 16 6 C -0.21 -2.42 5.31 -35.92 -0.19 -2.61 16 7 C 0.13 1.42 4.72 -4.97 -0.02 1.40 16 8 N -0.54 -6.66 4.38 -244.37 -1.07 -7.73 16 9 C 0.02 0.21 9.37 60.07 0.56 0.77 16 10 C 0.06 0.77 4.36 -3.82 -0.02 0.75 16 11 C 0.02 0.36 2.26 -93.41 -0.21 0.15 16 12 H 0.10 1.64 6.66 -51.93 -0.35 1.30 16 13 C 0.25 5.04 13.66 -20.75 -0.28 4.76 16 14 N -0.47 -10.42 18.54 42.16 0.78 -9.64 16 15 C -0.01 -0.12 3.49 -27.88 -0.10 -0.22 16 16 C -0.53 -13.85 9.15 -34.44 -0.32 -14.16 16 17 H 0.07 2.16 7.84 -52.49 -0.41 1.75 16 18 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 19 N -0.90 -26.67 13.96 55.43 0.77 -25.90 16 20 Si 0.88 20.24 27.47 -169.99 -4.67 15.57 16 21 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 22 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.26 -5.76 6.54 56.52 0.37 -5.39 16 24 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 25 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 26 H 0.08 1.21 7.35 -51.93 -0.38 0.83 16 27 H 0.20 1.25 8.06 -52.48 -0.42 0.83 16 28 H 0.10 1.18 5.85 -51.93 -0.30 0.88 16 29 H 0.05 0.49 8.12 -51.93 -0.42 0.07 16 30 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.69 5.67 -51.93 -0.29 0.40 16 32 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.06 0.66 8.00 -51.93 -0.42 0.24 16 34 H 0.08 1.07 7.94 -51.93 -0.41 0.66 16 35 H 0.03 0.61 7.58 -51.93 -0.39 0.22 16 36 H 0.03 0.54 7.19 -51.93 -0.37 0.16 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 325.00 15.07 4.90 4.90 Total: -1.00 -32.04 325.00 -7.03 -39.07 By element: Atomic # 1 Polarization: 3.12 SS G_CDS: -5.03 Total: -1.91 kcal Atomic # 6 Polarization: -6.42 SS G_CDS: -0.26 Total: -6.68 kcal Atomic # 7 Polarization: -49.91 SS G_CDS: 0.36 Total: -49.55 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.67 Total: 15.57 kcal Atomic # 16 Polarization: 0.93 SS G_CDS: -2.33 Total: -1.40 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -32.04 -7.03 -39.07 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171988807.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.316 kcal (2) G-P(sol) polarization free energy of solvation -32.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.075 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds