Wall clock time and date at job start Tue Mar 31 2020 00:31:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.31786 * 122.74951 * 2 1 4 4 C 1.29028 * 117.12685 * 179.97438 * 3 2 1 5 5 S 1.70976 * 110.16563 * 359.72743 * 4 3 2 6 6 C 1.33633 * 122.75169 * 179.97438 * 2 1 3 7 7 C 1.50700 * 126.03649 * 0.02562 * 6 2 1 8 8 N 1.46903 * 109.47051 * 89.99935 * 7 6 2 9 9 C 1.46905 * 111.00105 * 66.04595 * 8 7 6 10 10 C 1.46900 * 111.00097 * 189.99990 * 8 7 6 11 11 C 1.53001 * 109.47184 * 75.67506 * 10 8 7 12 12 H 1.09000 * 109.47187 * 304.73419 * 11 10 8 13 13 C 1.47206 * 109.47058 * 64.72842 * 11 10 8 14 14 N 5.12220 * 51.39818 * 230.94713 * 2 1 3 15 15 C 1.52993 * 109.47231 * 184.73009 * 11 10 8 16 16 C 1.50707 * 109.47127 * 175.00229 * 15 11 10 17 17 H 1.07993 * 119.99599 * 359.97438 * 16 15 11 18 18 C 1.37870 * 119.99840 * 179.72616 * 16 15 11 19 19 N 1.31518 * 120.00157 * 180.27696 * 18 16 15 20 20 Si 1.86802 * 120.00385 * 0.27100 * 18 16 15 21 21 H 1.48500 * 109.47068 * 90.00138 * 20 18 16 22 22 H 1.48499 * 109.47475 * 210.00646 * 20 18 16 23 23 H 1.48510 * 109.46898 * 330.00275 * 20 18 16 24 24 H 1.08993 * 109.47566 * 270.00370 * 1 2 3 25 25 H 1.09007 * 109.47058 * 30.00531 * 1 2 3 26 26 H 1.08999 * 109.46832 * 150.00149 * 1 2 3 27 27 H 1.08004 * 124.91789 * 179.97438 * 4 3 2 28 28 H 1.08996 * 109.47389 * 329.99679 * 7 6 2 29 29 H 1.09002 * 109.47028 * 209.99175 * 7 6 2 30 30 H 1.09002 * 109.46703 * 187.98282 * 9 8 7 31 31 H 1.08997 * 109.46996 * 307.97561 * 9 8 7 32 32 H 1.08995 * 109.47325 * 67.97850 * 9 8 7 33 33 H 1.09000 * 109.47095 * 315.67810 * 10 8 7 34 34 H 1.08996 * 109.47379 * 195.67638 * 10 8 7 35 35 H 1.08998 * 109.47320 * 54.99777 * 15 11 10 36 36 H 1.09003 * 109.47121 * 294.99702 * 15 11 10 37 37 H 0.96999 * 120.00220 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2199 1.1084 0.0000 4 6 3.5039 0.9820 0.0005 5 16 3.9333 -0.6730 0.0087 6 6 2.2299 -1.1239 0.0005 7 6 1.6847 -2.5288 0.0006 8 7 1.5080 -2.9855 -1.3844 9 6 2.8031 -3.1134 -2.0659 10 6 0.7618 -4.2501 -1.4306 11 6 -0.7212 -3.9769 -1.1720 12 1 -0.8333 -3.4446 -0.2274 13 6 -1.2669 -3.1560 -2.2654 14 7 -1.6888 -2.5220 -3.1086 15 6 -1.4798 -5.3037 -1.1029 16 6 -2.9157 -5.0425 -0.7271 17 1 -3.2532 -4.0313 -0.5544 18 6 -3.7995 -6.0940 -0.6088 19 7 -5.0539 -5.8657 -0.2862 20 14 -3.2155 -7.8432 -0.9070 21 1 -2.7341 -8.4287 0.3699 22 1 -4.3404 -8.6579 -1.4323 23 1 -2.1076 -7.8333 -1.8959 24 1 -0.3634 0.0001 1.0276 25 1 -0.3633 0.8900 -0.5139 26 1 -0.3633 -0.8900 -0.5138 27 1 4.2060 1.8027 0.0002 28 1 0.7234 -2.5454 0.5141 29 1 2.3828 -3.1894 0.5147 30 1 2.6383 -3.3143 -3.1245 31 1 3.3649 -2.1859 -1.9554 32 1 3.3670 -3.9346 -1.6236 33 1 1.1452 -4.9263 -0.6666 34 1 0.8812 -4.7067 -2.4131 35 1 -1.0192 -5.9470 -0.3532 36 1 -1.4424 -5.7947 -2.0754 37 1 -5.6756 -6.6055 -0.2026 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171988807.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:31:53 Heat of formation + Delta-G solvation = 47.522241 kcal Electronic energy + Delta-G solvation = -19258.527450 eV Core-core repulsion = 16354.870877 eV Total energy + Delta-G solvation = -2903.656574 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.91231 -39.30546 -37.25247 -35.44380 -33.89116 -33.02543 -30.13973 -29.27572 -27.11872 -25.92216 -24.99736 -23.22488 -22.57798 -19.76622 -19.03602 -18.88620 -18.29204 -17.03069 -16.35830 -16.26300 -15.99775 -15.45604 -15.33346 -14.83206 -14.65863 -14.42950 -14.21173 -13.87026 -13.63135 -13.47049 -13.45523 -13.26533 -13.06815 -12.78257 -12.70977 -12.67477 -12.31516 -12.08741 -11.91184 -11.61632 -11.50040 -11.22535 -10.69846 -10.59256 -10.20255 -9.61650 -9.22880 -8.21408 -6.26884 -0.22736 0.46263 0.79621 1.44497 1.48103 1.57799 1.82156 2.09840 2.18009 2.43773 3.00923 3.15535 3.36109 3.37065 3.84545 4.05978 4.10082 4.28437 4.33919 4.44220 4.54229 4.64331 4.69575 4.71643 4.76484 4.85177 4.88802 4.94252 5.01575 5.06369 5.26676 5.34087 5.47685 5.66760 6.03399 6.09341 6.30230 6.80888 6.81133 6.95828 7.37648 8.95565 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.027198 B = 0.004229 C = 0.004002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.250615 B = 6619.629464 C = 6995.616003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.058 3.942 3 N -0.506 5.506 4 C 0.015 3.985 5 S 0.160 5.840 6 C -0.221 4.221 7 C 0.127 3.873 8 N -0.559 5.559 9 C 0.022 3.978 10 C 0.069 3.931 11 C 0.025 3.975 12 H 0.112 0.888 13 C 0.264 3.736 14 N -0.517 5.517 15 C -0.003 4.003 16 C -0.529 4.529 17 H 0.028 0.972 18 C 0.003 3.997 19 N -0.955 5.955 20 Si 0.947 3.053 21 H -0.257 1.257 22 H -0.298 1.298 23 H -0.236 1.236 24 H 0.083 0.917 25 H 0.061 0.939 26 H 0.069 0.931 27 H 0.228 0.772 28 H 0.097 0.903 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.050 0.950 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.065 0.935 36 H 0.027 0.973 37 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 24.574 4.846 3.087 25.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.074 4.074 3 N -0.220 5.220 4 C -0.282 4.282 5 S 0.414 5.586 6 C -0.342 4.342 7 C -0.002 4.002 8 N -0.283 5.283 9 C -0.126 4.126 10 C -0.059 4.059 11 C 0.003 3.997 12 H 0.130 0.870 13 C -0.052 4.052 14 N -0.194 5.194 15 C -0.042 4.042 16 C -0.567 4.567 17 H 0.047 0.953 18 C -0.193 4.193 19 N -0.596 5.596 20 Si 0.770 3.230 21 H -0.181 1.181 22 H -0.225 1.225 23 H -0.159 1.159 24 H 0.102 0.898 25 H 0.080 0.920 26 H 0.088 0.912 27 H 0.244 0.756 28 H 0.115 0.885 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.108 0.892 34 H 0.106 0.894 35 H 0.083 0.917 36 H 0.046 0.954 37 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 24.287 6.123 1.603 25.098 hybrid contribution -1.145 -0.970 0.524 1.590 sum 23.142 5.153 2.128 23.804 Atomic orbital electron populations 1.20322 0.87661 1.02792 1.02997 1.20280 0.98306 0.86802 1.02024 1.66201 1.06445 1.32360 1.17028 1.28854 0.94873 1.01602 1.02897 1.83640 1.05141 1.02666 1.67152 1.25711 0.95964 1.00388 1.12148 1.20571 1.01473 0.88261 0.89918 1.61844 1.20263 1.30670 1.15540 1.22487 0.89218 1.01567 0.99310 1.22187 0.89459 0.90141 1.04125 1.19102 0.94449 0.94285 0.91830 0.87011 1.29410 0.90544 0.91786 0.93501 1.81016 1.11923 1.12863 1.13643 1.19599 0.93349 0.92765 0.98528 1.21398 0.95000 0.93669 1.46622 0.95318 1.26029 0.94590 1.04462 0.94255 1.70096 1.05512 1.33582 1.50418 0.85708 0.78674 0.78343 0.80253 1.18096 1.22488 1.15867 0.89848 0.91981 0.91220 0.75574 0.88528 0.90939 0.91435 0.91582 0.93169 0.89199 0.89352 0.91719 0.95428 0.92757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.14 9.82 71.23 0.70 -1.44 16 2 C 0.06 1.51 6.74 41.52 0.28 1.79 16 3 N -0.51 -12.97 10.53 -191.55 -2.02 -14.99 16 4 C 0.02 0.27 12.23 130.65 1.60 1.87 16 5 S 0.16 2.49 21.67 -56.49 -1.22 1.27 16 6 C -0.22 -4.79 5.31 24.64 0.13 -4.66 16 7 C 0.13 2.53 4.72 85.56 0.40 2.94 16 8 N -0.56 -12.37 4.38 -927.04 -4.06 -16.43 16 9 C 0.02 0.39 9.37 127.69 1.20 1.59 16 10 C 0.07 1.57 4.36 86.30 0.38 1.94 16 11 C 0.03 0.82 2.26 -12.60 -0.03 0.79 16 12 H 0.11 3.45 6.66 -2.39 -0.02 3.43 16 13 C 0.26 10.62 13.66 89.44 1.22 11.84 16 14 N -0.52 -23.56 18.54 20.01 0.37 -23.19 16 15 C 0.00 -0.13 3.49 29.85 0.10 -0.03 16 16 C -0.53 -28.01 9.15 25.60 0.23 -27.78 16 17 H 0.03 1.73 7.84 -2.91 -0.02 1.71 16 18 C 0.00 0.17 5.47 84.65 0.46 0.64 16 19 N -0.96 -58.76 13.96 21.45 0.30 -58.46 16 20 Si 0.95 40.67 27.47 68.60 1.88 42.56 16 21 H -0.26 -10.21 7.11 99.48 0.71 -9.50 16 22 H -0.30 -13.27 7.11 99.48 0.71 -12.56 16 23 H -0.24 -8.97 6.54 99.48 0.65 -8.32 16 24 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 25 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 26 H 0.07 2.07 7.35 -2.39 -0.02 2.06 16 27 H 0.23 2.22 8.06 -2.91 -0.02 2.20 16 28 H 0.10 2.04 5.85 -2.39 -0.01 2.03 16 29 H 0.07 1.12 8.12 -2.39 -0.02 1.10 16 30 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 31 H 0.07 1.17 5.67 -2.39 -0.01 1.16 16 32 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.09 1.52 8.00 -2.39 -0.02 1.51 16 34 H 0.09 1.94 7.94 -2.39 -0.02 1.92 16 35 H 0.06 2.16 7.58 -2.39 -0.02 2.15 16 36 H 0.03 1.08 7.19 -2.39 -0.02 1.06 16 37 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -72.68 325.00 2.95 -69.72 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: 1.02 Total: 10.05 kcal Atomic # 6 Polarization: -17.20 SS G_CDS: 6.68 Total: -10.53 kcal Atomic # 7 Polarization: -107.67 SS G_CDS: -5.40 Total: -113.07 kcal Atomic # 14 Polarization: 40.67 SS G_CDS: 1.88 Total: 42.56 kcal Atomic # 16 Polarization: 2.49 SS G_CDS: -1.22 Total: 1.27 kcal Total: -72.68 2.95 -69.72 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171988807.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.247 kcal (2) G-P(sol) polarization free energy of solvation -72.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.522 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds