Wall clock time and date at job start Tue Mar 31 2020 01:14:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08993 * 109.47446 * 2 1 4 4 C 1.50700 * 109.47396 * 120.00220 * 2 1 3 5 5 O 1.21281 * 120.00441 * 95.45236 * 4 2 1 6 6 N 1.34780 * 119.99984 * 275.45520 * 4 2 1 7 7 C 1.46499 * 119.99799 * 5.68368 * 6 4 2 8 8 C 1.50705 * 109.47193 * 93.67239 * 7 6 4 9 9 H 1.08006 * 120.00006 * 359.97438 * 8 7 6 10 10 C 1.37879 * 120.00311 * 180.02562 * 8 7 6 11 11 N 1.31511 * 119.99683 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 119.99807 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47294 * 59.99848 * 12 10 8 14 14 H 1.48505 * 109.46809 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47272 * 299.99561 * 12 10 8 16 16 C 1.46501 * 120.00277 * 185.68403 * 6 4 2 17 17 C 1.53005 * 109.46600 * 84.98223 * 16 6 4 18 18 F 1.39899 * 109.46969 * 63.09586 * 17 16 6 19 19 F 1.39906 * 109.46503 * 183.09391 * 17 16 6 20 20 F 1.39898 * 109.47414 * 303.09208 * 17 16 6 21 21 C 1.52997 * 109.47192 * 240.00080 * 2 1 3 22 22 C 1.53002 * 117.50182 * 59.99842 * 21 2 1 23 23 C 1.52999 * 60.03053 * 107.47996 * 22 21 2 24 24 H 1.09002 * 109.47355 * 293.95910 * 1 2 3 25 25 H 1.09000 * 109.47396 * 53.95752 * 1 2 3 26 26 H 1.08996 * 109.47703 * 173.96163 * 1 2 3 27 27 H 1.09000 * 109.47598 * 213.66783 * 7 6 4 28 28 H 1.09004 * 109.47421 * 333.67453 * 7 6 4 29 29 H 0.97002 * 119.99923 * 179.97438 * 11 10 8 30 30 H 1.09001 * 109.47063 * 204.97945 * 16 6 4 31 31 H 1.08994 * 109.46945 * 324.98653 * 16 6 4 32 32 H 1.09002 * 115.56038 * 274.31548 * 21 2 1 33 33 H 1.08993 * 117.50264 * 214.98669 * 22 21 2 34 34 H 1.09005 * 117.49494 * 359.97438 * 22 21 2 35 35 H 1.08999 * 117.49658 * 107.50601 * 23 22 21 36 36 H 1.08997 * 117.49918 * 252.51926 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.3286 -1.8852 1.1740 6 7 2.1524 -0.0404 2.3937 7 6 1.6786 1.3422 2.4948 8 6 0.2651 1.3519 3.0174 9 1 -0.2309 0.4212 3.2505 10 6 -0.3954 2.5488 3.1971 11 7 0.2084 3.6820 2.9128 12 14 -2.1477 2.5606 3.8442 13 1 -2.1841 1.9258 5.1861 14 1 -2.6279 3.9621 3.9469 15 1 -3.0238 1.8035 2.9145 16 6 2.7566 -0.6946 3.5569 17 6 4.2786 -0.5539 3.4876 18 9 4.6253 0.7998 3.5558 19 9 4.8594 -1.2387 4.5605 20 9 4.7426 -1.0941 2.2835 21 6 2.0399 -0.7212 -1.2492 22 6 1.6356 -0.1495 -2.6096 23 6 3.0742 0.0058 -2.1123 24 1 -0.3634 0.4173 0.9391 25 1 -0.3634 0.6047 -0.8309 26 1 -0.3634 -1.0219 -0.1081 27 1 2.3219 1.8978 3.1771 28 1 1.7049 1.8083 1.5098 29 1 -0.2564 4.5241 3.0388 30 1 2.3894 -0.2248 4.4694 31 1 2.4891 -1.7512 3.5592 32 1 2.1269 -1.8044 -1.1643 33 1 1.4567 -0.8565 -3.4196 34 1 1.0059 0.7402 -2.6146 35 1 3.8417 -0.5990 -2.5951 36 1 3.3908 0.9976 -1.7898 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000177625012.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:45 Heat of formation + Delta-G solvation = -177.126111 kcal Electronic energy + Delta-G solvation = -23351.468497 eV Core-core repulsion = 19421.168078 eV Total energy + Delta-G solvation = -3930.300420 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -49.64788 -47.20785 -47.09011 -39.63857 -37.02430 -35.26726 -32.83596 -31.81386 -29.17275 -27.07576 -24.56556 -23.15791 -23.03103 -22.03253 -20.46136 -18.55218 -18.10484 -17.97300 -17.31221 -16.64884 -16.18617 -15.71309 -14.82237 -14.44817 -14.12116 -14.06846 -13.96317 -13.88157 -13.58820 -13.29714 -13.28347 -13.00558 -12.64040 -12.38997 -12.02434 -11.82129 -11.69665 -11.48598 -11.35982 -11.18727 -11.01898 -10.87402 -10.33768 -10.25865 -10.09920 -9.93271 -9.62985 -9.10952 -8.63363 -8.07378 -6.28207 -4.35648 2.95463 3.18311 3.24313 3.24790 3.39261 3.51948 4.07644 4.23355 4.31871 4.48050 4.69196 4.96991 5.05007 5.09129 5.20326 5.38690 5.55456 5.74218 5.76168 5.82625 5.86240 5.96513 6.09161 6.28367 6.33976 6.43321 6.47560 6.69068 6.96103 7.10298 7.28112 7.64387 7.91363 8.05594 8.64515 8.79870 9.31144 10.78677 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.011859 B = 0.008654 C = 0.005704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.454772 B = 3234.855080 C = 4907.475935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.070 4.070 3 H 0.096 0.904 4 C 0.530 3.470 5 O -0.556 6.556 6 N -0.597 5.597 7 C 0.233 3.767 8 C -0.542 4.542 9 H 0.064 0.936 10 C 0.069 3.931 11 N -0.886 5.886 12 Si 0.896 3.104 13 H -0.275 1.275 14 H -0.286 1.286 15 H -0.274 1.274 16 C 0.082 3.918 17 C 0.430 3.570 18 F -0.182 7.182 19 F -0.191 7.191 20 F -0.179 7.179 21 C -0.134 4.134 22 C -0.178 4.178 23 C -0.184 4.184 24 H 0.097 0.903 25 H 0.057 0.943 26 H 0.049 0.951 27 H 0.041 0.959 28 H 0.048 0.952 29 H 0.267 0.733 30 H 0.125 0.875 31 H 0.114 0.886 32 H 0.114 0.886 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.090 0.910 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.747 -5.064 -3.661 7.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.091 4.091 3 H 0.114 0.886 4 C 0.320 3.680 5 O -0.435 6.435 6 N -0.328 5.328 7 C 0.114 3.886 8 C -0.580 4.580 9 H 0.082 0.918 10 C -0.135 4.135 11 N -0.523 5.523 12 Si 0.723 3.277 13 H -0.201 1.201 14 H -0.211 1.211 15 H -0.199 1.199 16 C -0.045 4.045 17 C 0.374 3.626 18 F -0.163 7.163 19 F -0.172 7.172 20 F -0.161 7.161 21 C -0.153 4.153 22 C -0.215 4.215 23 C -0.221 4.221 24 H 0.116 0.884 25 H 0.076 0.924 26 H 0.068 0.932 27 H 0.059 0.941 28 H 0.066 0.934 29 H 0.077 0.923 30 H 0.143 0.857 31 H 0.132 0.868 32 H 0.132 0.868 33 H 0.109 0.891 34 H 0.113 0.887 35 H 0.108 0.892 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 3.896 -5.433 -3.704 7.643 hybrid contribution -0.623 0.302 0.447 0.824 sum 3.273 -5.131 -3.257 6.902 Atomic orbital electron populations 1.21845 0.91890 1.01643 1.04960 1.20741 0.98282 0.99681 0.90398 0.88600 1.20588 0.76236 0.86619 0.84592 1.90592 1.51212 1.16249 1.85430 1.48174 1.58765 1.17221 1.08631 1.19679 0.95043 0.74628 0.99254 1.21363 0.98259 0.93036 1.45356 0.91821 1.24925 0.98390 0.95263 0.94970 1.69908 1.37617 0.97710 1.47085 0.86580 0.84191 0.77221 0.79668 1.20083 1.21108 1.19937 1.22365 0.85015 1.03174 0.93948 1.21603 0.93955 0.73634 0.73403 1.93187 1.93857 1.33302 1.95966 1.93138 1.86996 1.80173 1.56916 1.93197 1.90754 1.85896 1.46205 1.22204 1.02834 0.99941 0.90301 1.22916 0.98030 1.03283 0.97234 1.23024 0.92416 1.02059 1.04560 0.88426 0.92412 0.93193 0.94140 0.93418 0.92279 0.85726 0.86833 0.86795 0.89129 0.88690 0.89175 0.88857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.55 8.87 37.15 0.33 -2.22 16 2 C -0.07 -1.25 2.09 -91.78 -0.19 -1.44 16 3 H 0.10 1.76 6.01 -51.93 -0.31 1.45 16 4 C 0.53 10.63 6.14 -10.98 -0.07 10.56 16 5 O -0.56 -11.98 14.66 5.56 0.08 -11.90 16 6 N -0.60 -11.92 2.41 -175.05 -0.42 -12.34 16 7 C 0.23 5.18 4.85 -5.19 -0.03 5.16 16 8 C -0.54 -12.97 7.24 -34.44 -0.25 -13.22 16 9 H 0.06 1.53 7.81 -52.48 -0.41 1.12 16 10 C 0.07 1.70 5.46 -17.82 -0.10 1.61 16 11 N -0.89 -23.18 13.29 55.43 0.74 -22.45 16 12 Si 0.90 19.49 29.54 -169.99 -5.02 14.46 16 13 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 14 H -0.29 -6.24 7.11 56.52 0.40 -5.84 16 15 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 16 C 0.08 1.43 5.48 -4.04 -0.02 1.41 16 17 C 0.43 7.47 3.30 37.16 0.12 7.59 16 18 F -0.18 -3.34 16.91 2.25 0.04 -3.30 16 19 F -0.19 -3.05 17.32 2.25 0.04 -3.01 16 20 F -0.18 -3.40 15.82 2.25 0.04 -3.36 16 21 C -0.13 -2.12 4.96 -90.58 -0.45 -2.57 16 22 C -0.18 -2.32 9.80 -26.73 -0.26 -2.58 16 23 C -0.18 -2.54 10.18 -26.70 -0.27 -2.81 16 24 H 0.10 1.95 5.55 -51.93 -0.29 1.67 16 25 H 0.06 0.90 7.51 -51.93 -0.39 0.51 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.04 0.96 7.72 -51.93 -0.40 0.56 16 28 H 0.05 1.10 5.70 -51.93 -0.30 0.81 16 29 H 0.27 6.72 8.31 -40.82 -0.34 6.38 16 30 H 0.12 2.02 8.03 -51.93 -0.42 1.60 16 31 H 0.11 1.89 7.50 -51.93 -0.39 1.50 16 32 H 0.11 1.93 7.33 -51.93 -0.38 1.55 16 33 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 34 H 0.09 1.21 7.68 -51.93 -0.40 0.81 16 35 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.09 1.29 8.05 -51.93 -0.42 0.87 16 LS Contribution 311.27 15.07 4.69 4.69 Total: -1.00 -26.57 311.27 -5.51 -32.08 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -4.50 Total: 3.64 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: -1.18 Total: 1.48 kcal Atomic # 7 Polarization: -35.10 SS G_CDS: 0.31 Total: -34.79 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: 0.08 Total: -11.90 kcal Atomic # 9 Polarization: -9.78 SS G_CDS: 0.11 Total: -9.67 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -5.02 Total: 14.46 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -26.57 -5.51 -32.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177625012.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.042 kcal (2) G-P(sol) polarization free energy of solvation -26.574 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.084 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.55 seconds