Wall clock time and date at job start Tue Mar 31 2020 01:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 H 1.08993 * 109.47446 * 2 1 4 4 C 1.50700 * 109.47396 * 120.00220 * 2 1 3 5 5 O 1.21281 * 120.00441 * 95.45236 * 4 2 1 6 6 N 1.34780 * 119.99984 * 275.45520 * 4 2 1 7 7 C 1.46499 * 119.99799 * 5.68368 * 6 4 2 8 8 C 1.50705 * 109.47193 * 93.67239 * 7 6 4 9 9 H 1.08006 * 120.00006 * 359.97438 * 8 7 6 10 10 C 1.37879 * 120.00311 * 180.02562 * 8 7 6 11 11 N 1.31511 * 119.99683 * 359.97438 * 10 8 7 12 12 Si 1.86802 * 119.99807 * 179.97438 * 10 8 7 13 13 H 1.48497 * 109.47294 * 59.99848 * 12 10 8 14 14 H 1.48505 * 109.46809 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.47272 * 299.99561 * 12 10 8 16 16 C 1.46501 * 120.00277 * 185.68403 * 6 4 2 17 17 C 1.53005 * 109.46600 * 84.98223 * 16 6 4 18 18 F 1.39899 * 109.46969 * 63.09586 * 17 16 6 19 19 F 1.39906 * 109.46503 * 183.09391 * 17 16 6 20 20 F 1.39898 * 109.47414 * 303.09208 * 17 16 6 21 21 C 1.52997 * 109.47192 * 240.00080 * 2 1 3 22 22 C 1.53002 * 117.50182 * 59.99842 * 21 2 1 23 23 C 1.52999 * 60.03053 * 107.47996 * 22 21 2 24 24 H 1.09002 * 109.47355 * 293.95910 * 1 2 3 25 25 H 1.09000 * 109.47396 * 53.95752 * 1 2 3 26 26 H 1.08996 * 109.47703 * 173.96163 * 1 2 3 27 27 H 1.09000 * 109.47598 * 213.66783 * 7 6 4 28 28 H 1.09004 * 109.47421 * 333.67453 * 7 6 4 29 29 H 0.97002 * 119.99923 * 179.97438 * 11 10 8 30 30 H 1.09001 * 109.47063 * 204.97945 * 16 6 4 31 31 H 1.08994 * 109.46945 * 324.98653 * 16 6 4 32 32 H 1.09002 * 115.56038 * 274.31548 * 21 2 1 33 33 H 1.08993 * 117.50264 * 214.98669 * 22 21 2 34 34 H 1.09005 * 117.49494 * 359.97438 * 22 21 2 35 35 H 1.08999 * 117.49658 * 107.50601 * 23 22 21 36 36 H 1.08997 * 117.49918 * 252.51926 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 2.3286 -1.8852 1.1740 6 7 2.1524 -0.0404 2.3937 7 6 1.6786 1.3422 2.4948 8 6 0.2651 1.3519 3.0174 9 1 -0.2309 0.4212 3.2505 10 6 -0.3954 2.5488 3.1971 11 7 0.2084 3.6820 2.9128 12 14 -2.1477 2.5606 3.8442 13 1 -2.1841 1.9258 5.1861 14 1 -2.6279 3.9621 3.9469 15 1 -3.0238 1.8035 2.9145 16 6 2.7566 -0.6946 3.5569 17 6 4.2786 -0.5539 3.4876 18 9 4.6253 0.7998 3.5558 19 9 4.8594 -1.2387 4.5605 20 9 4.7426 -1.0941 2.2835 21 6 2.0399 -0.7212 -1.2492 22 6 1.6356 -0.1495 -2.6096 23 6 3.0742 0.0058 -2.1123 24 1 -0.3634 0.4173 0.9391 25 1 -0.3634 0.6047 -0.8309 26 1 -0.3634 -1.0219 -0.1081 27 1 2.3219 1.8978 3.1771 28 1 1.7049 1.8083 1.5098 29 1 -0.2564 4.5241 3.0388 30 1 2.3894 -0.2248 4.4694 31 1 2.4891 -1.7512 3.5592 32 1 2.1269 -1.8044 -1.1643 33 1 1.4567 -0.8565 -3.4196 34 1 1.0059 0.7402 -2.6146 35 1 3.8417 -0.5990 -2.5951 36 1 3.3908 0.9976 -1.7898 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000177625012.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:14:44 Heat of formation + Delta-G solvation = -189.765597 kcal Electronic energy + Delta-G solvation = -23352.016586 eV Core-core repulsion = 19421.168078 eV Total energy + Delta-G solvation = -3930.848509 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -51.08491 -48.60969 -48.57145 -41.17968 -38.27578 -36.93394 -34.65897 -33.22587 -30.72437 -28.83869 -25.96960 -24.96120 -24.45676 -23.10616 -21.81427 -20.01623 -19.55784 -19.42300 -18.92017 -18.28048 -17.86007 -17.19644 -16.44187 -15.95484 -15.60541 -15.51627 -15.37741 -15.18459 -15.02491 -14.75333 -14.73544 -14.49236 -14.34785 -13.94349 -13.48414 -13.40671 -13.12646 -13.03055 -12.82260 -12.74769 -12.57971 -12.28380 -12.02891 -11.79445 -11.65960 -11.25520 -10.88323 -10.68258 -10.49977 -9.75397 -8.18395 -6.30536 1.44404 1.46476 1.48550 1.54431 1.84336 2.02652 2.43923 2.85482 2.94903 3.05147 3.13743 3.28724 3.62816 3.78330 4.04553 4.12676 4.20548 4.34671 4.38876 4.57541 4.60117 4.75812 4.79774 4.95976 5.02974 5.09574 5.21483 5.29696 5.40021 5.52487 5.55597 5.74181 6.04077 6.38515 6.78261 7.16281 7.39723 8.88025 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.011859 B = 0.008654 C = 0.005704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.454772 B = 3234.855080 C = 4907.475935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.067 4.067 3 H 0.087 0.913 4 C 0.525 3.475 5 O -0.572 6.572 6 N -0.601 5.601 7 C 0.249 3.751 8 C -0.539 4.539 9 H 0.061 0.939 10 C 0.027 3.973 11 N -0.917 5.917 12 Si 0.951 3.049 13 H -0.273 1.273 14 H -0.287 1.287 15 H -0.269 1.269 16 C 0.078 3.922 17 C 0.436 3.564 18 F -0.188 7.188 19 F -0.180 7.180 20 F -0.188 7.188 21 C -0.156 4.156 22 C -0.155 4.155 23 C -0.182 4.182 24 H 0.070 0.930 25 H 0.076 0.924 26 H 0.054 0.946 27 H 0.024 0.976 28 H 0.039 0.961 29 H 0.267 0.733 30 H 0.137 0.863 31 H 0.124 0.876 32 H 0.101 0.899 33 H 0.112 0.888 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.181 -5.517 -4.252 7.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.088 4.088 3 H 0.105 0.895 4 C 0.316 3.684 5 O -0.452 6.452 6 N -0.331 5.331 7 C 0.129 3.871 8 C -0.577 4.577 9 H 0.079 0.921 10 C -0.174 4.174 11 N -0.556 5.556 12 Si 0.777 3.223 13 H -0.198 1.198 14 H -0.212 1.212 15 H -0.194 1.194 16 C -0.048 4.048 17 C 0.380 3.620 18 F -0.170 7.170 19 F -0.161 7.161 20 F -0.170 7.170 21 C -0.175 4.175 22 C -0.192 4.192 23 C -0.219 4.219 24 H 0.089 0.911 25 H 0.095 0.905 26 H 0.073 0.927 27 H 0.042 0.958 28 H 0.057 0.943 29 H 0.077 0.923 30 H 0.155 0.845 31 H 0.142 0.858 32 H 0.120 0.880 33 H 0.130 0.870 34 H 0.118 0.882 35 H 0.122 0.878 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 3.336 -5.902 -4.287 8.022 hybrid contribution -0.393 0.402 0.642 0.853 sum 2.943 -5.500 -3.646 7.225 Atomic orbital electron populations 1.21756 0.91592 1.02063 1.04197 1.20734 0.98460 0.99134 0.90514 0.89469 1.21015 0.75782 0.86536 0.85085 1.90574 1.52009 1.16932 1.85728 1.48139 1.58911 1.16526 1.09566 1.19326 0.94095 0.75586 0.98113 1.21512 0.98827 0.92798 1.44577 0.92106 1.25561 1.01513 0.95010 0.95292 1.70002 1.38966 0.98149 1.48450 0.85708 0.80432 0.77014 0.79161 1.19804 1.21218 1.19412 1.22540 0.84964 1.03712 0.93613 1.21480 0.93819 0.73343 0.73311 1.93177 1.93906 1.33883 1.95989 1.93159 1.86811 1.79871 1.56266 1.93180 1.90861 1.86007 1.46927 1.22064 1.05538 0.99139 0.90718 1.23018 0.97210 1.03333 0.95656 1.23113 0.93241 1.01771 1.03757 0.91111 0.90539 0.92680 0.95797 0.94340 0.92349 0.84500 0.85804 0.88040 0.86985 0.88170 0.87826 0.89131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.71 8.87 71.98 0.64 -4.07 16 2 C -0.07 -2.37 2.09 -11.54 -0.02 -2.40 16 3 H 0.09 3.20 6.01 -2.39 -0.01 3.19 16 4 C 0.53 20.93 6.14 87.66 0.54 21.46 16 5 O -0.57 -24.44 14.66 -3.03 -0.04 -24.49 16 6 N -0.60 -23.90 2.41 -826.13 -1.99 -25.89 16 7 C 0.25 11.13 4.85 85.63 0.42 11.54 16 8 C -0.54 -25.66 7.24 25.60 0.19 -25.48 16 9 H 0.06 2.90 7.81 -2.91 -0.02 2.87 16 10 C 0.03 1.34 5.46 84.66 0.46 1.81 16 11 N -0.92 -48.04 13.29 21.45 0.28 -47.75 16 12 Si 0.95 39.43 29.54 68.60 2.03 41.46 16 13 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 14 H -0.29 -11.87 7.11 99.48 0.71 -11.16 16 15 H -0.27 -10.87 7.11 99.48 0.71 -10.16 16 16 C 0.08 2.67 5.48 86.38 0.47 3.14 16 17 C 0.44 14.85 3.30 71.98 0.24 15.09 16 18 F -0.19 -6.84 16.91 44.97 0.76 -6.08 16 19 F -0.18 -5.52 17.32 44.97 0.78 -4.74 16 20 F -0.19 -7.04 15.82 44.97 0.71 -6.32 16 21 C -0.16 -4.74 4.96 -10.77 -0.05 -4.80 16 22 C -0.16 -3.66 9.80 30.59 0.30 -3.36 16 23 C -0.18 -4.71 10.18 30.62 0.31 -4.40 16 24 H 0.07 2.80 5.55 -2.39 -0.01 2.79 16 25 H 0.08 2.26 7.51 -2.39 -0.02 2.24 16 26 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 27 H 0.02 1.15 7.72 -2.39 -0.02 1.13 16 28 H 0.04 1.80 5.70 -2.38 -0.01 1.79 16 29 H 0.27 13.44 8.31 -92.71 -0.77 12.67 16 30 H 0.14 4.31 8.03 -2.39 -0.02 4.29 16 31 H 0.12 4.00 7.50 -2.39 -0.02 3.98 16 32 H 0.10 3.36 7.33 -2.39 -0.02 3.34 16 33 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 34 H 0.10 2.28 7.68 -2.38 -0.02 2.26 16 35 H 0.10 2.39 8.14 -2.39 -0.02 2.37 16 36 H 0.09 2.39 8.05 -2.39 -0.02 2.37 16 Total: -1.00 -54.93 311.27 7.11 -47.82 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: 1.10 Total: 17.47 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: 3.48 Total: 8.53 kcal Atomic # 7 Polarization: -71.94 SS G_CDS: -1.71 Total: -73.64 kcal Atomic # 8 Polarization: -24.44 SS G_CDS: -0.04 Total: -24.49 kcal Atomic # 9 Polarization: -19.40 SS G_CDS: 2.25 Total: -17.15 kcal Atomic # 14 Polarization: 39.43 SS G_CDS: 2.03 Total: 41.46 kcal Total: -54.93 7.11 -47.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000177625012.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.948 kcal (2) G-P(sol) polarization free energy of solvation -54.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -196.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.818 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds