Wall clock time and date at job start Tue Mar 31 2020 01:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47470 * 2 1 4 4 C 1.50702 * 109.47339 * 240.00179 * 2 1 3 5 5 H 1.08006 * 120.00041 * 239.99907 * 4 2 1 6 6 C 1.37883 * 119.99855 * 59.99854 * 4 2 1 7 7 N 1.31512 * 119.99850 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99699 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47373 * 59.99893 * 8 6 4 10 10 H 1.48504 * 109.47190 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47265 * 299.99838 * 8 6 4 12 12 N 1.46901 * 109.47424 * 120.00054 * 2 1 3 13 13 C 1.46898 * 111.00353 * 176.04378 * 12 2 1 14 14 C 1.46899 * 110.99946 * 300.00455 * 12 2 1 15 15 C 1.50694 * 109.47270 * 169.99775 * 14 12 2 16 16 C 1.32574 * 120.00262 * 125.00112 * 15 14 12 17 17 C 1.47806 * 119.99908 * 180.27680 * 16 15 14 18 18 C 1.39544 * 120.12907 * 359.44357 * 17 16 15 19 19 C 1.37944 * 119.86715 * 179.71802 * 18 17 16 20 20 C 1.38470 * 120.13143 * 0.58618 * 19 18 17 21 21 Cl 1.73593 * 119.87502 * 179.69453 * 20 19 18 22 22 C 1.38471 * 120.25397 * 359.66932 * 20 19 18 23 23 C 1.37941 * 120.12996 * 0.04393 * 22 20 19 24 24 H 1.08998 * 109.46999 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47246 * 300.00215 * 1 2 3 26 26 H 1.08997 * 109.46967 * 60.00038 * 1 2 3 27 27 H 0.97001 * 119.99140 * 179.97438 * 7 6 4 28 28 H 1.08999 * 109.46865 * 183.95150 * 13 12 2 29 29 H 1.08992 * 109.47204 * 303.95931 * 13 12 2 30 30 H 1.09005 * 109.46686 * 63.95914 * 13 12 2 31 31 H 1.09005 * 109.47277 * 49.99664 * 14 12 2 32 32 H 1.09004 * 109.46581 * 289.99841 * 14 12 2 33 33 H 1.08002 * 120.00184 * 304.99373 * 15 14 12 34 34 H 1.08002 * 119.99554 * 359.97438 * 16 15 14 35 35 H 1.07995 * 120.06522 * 359.97438 * 18 17 16 36 36 H 1.07997 * 119.94036 * 180.27210 * 19 18 17 37 37 H 1.08004 * 119.93182 * 180.02562 * 22 20 19 38 38 H 1.08007 * 120.06385 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6534 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9436 0.8303 -2.6034 8 14 2.3214 -1.1202 -4.0079 9 1 1.8260 -2.5202 -4.0078 10 1 1.8260 -0.4205 -5.2205 11 1 3.8064 -1.1207 -4.0082 12 7 2.0197 -0.6925 1.1994 13 6 3.4851 -0.7946 1.1870 14 6 1.5487 -0.0265 2.4211 15 6 1.8580 -0.8912 3.6158 16 6 2.5568 -0.3974 4.6284 17 6 2.8654 -1.2475 5.7975 18 6 2.4125 -2.5666 5.8435 19 6 2.7086 -3.3569 6.9346 20 6 3.4433 -2.8400 7.9884 21 17 3.8052 -3.8382 9.3618 22 6 3.8907 -1.5302 7.9507 23 6 3.6058 -0.7322 6.8622 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 0.7096 1.1618 -3.4844 28 1 3.8164 -1.3722 2.0500 29 1 3.8070 -1.2915 0.2719 30 1 3.9192 0.2044 1.2301 31 1 0.4722 0.1323 2.3564 32 1 2.0519 0.9345 2.5280 33 1 1.5102 -1.9132 3.6473 34 1 2.9049 0.6245 4.5968 35 1 1.8350 -2.9691 5.0245 36 1 2.3625 -4.3793 6.9694 37 1 4.4637 -1.1325 8.7754 38 1 3.9550 0.2895 6.8341 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179451982.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:56 Heat of formation + Delta-G solvation = 36.118151 kcal Electronic energy + Delta-G solvation = -18453.912760 eV Core-core repulsion = 15515.425210 eV Total energy + Delta-G solvation = -2938.487549 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.48228 -37.39084 -36.67055 -34.32586 -32.60284 -31.29725 -30.10046 -28.96268 -26.66737 -24.68590 -23.64069 -23.07271 -21.83328 -19.52846 -19.17589 -17.44001 -16.31935 -15.78542 -15.38890 -15.22646 -14.49769 -14.09374 -13.81656 -13.71956 -13.59397 -13.46098 -12.68741 -12.38863 -12.17380 -11.95367 -11.72926 -11.57290 -11.21645 -11.18207 -11.04463 -10.85397 -10.73924 -10.63591 -10.15422 -10.06465 -9.87501 -9.84013 -9.25051 -8.92644 -8.45478 -8.02687 -7.24270 -6.03741 -4.08445 0.68846 1.12992 1.94379 2.44745 3.30649 3.35104 3.37956 3.67746 4.38674 4.54524 4.66937 4.68471 5.03650 5.12175 5.18176 5.27104 5.32374 5.50150 5.64373 5.77726 5.92896 6.00350 6.06704 6.13056 6.24196 6.26389 6.39148 6.60321 6.72734 6.76200 6.81233 6.87359 7.01309 7.12471 7.47769 7.68766 7.79775 8.16008 8.28436 8.55526 8.97514 9.56588 11.03067 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.039888 B = 0.002715 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.803849 B =10311.127939 C =10576.746966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.211 3.789 3 H -0.002 1.002 4 C -0.505 4.505 5 H 0.063 0.937 6 C 0.059 3.941 7 N -0.894 5.894 8 Si 0.897 3.103 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.534 5.534 13 C 0.038 3.962 14 C 0.069 3.931 15 C -0.087 4.087 16 C -0.160 4.160 17 C -0.028 4.028 18 C -0.110 4.110 19 C -0.105 4.105 20 C -0.047 4.047 21 Cl -0.080 7.080 22 C -0.108 4.108 23 C -0.107 4.107 24 H 0.035 0.965 25 H 0.009 0.991 26 H 0.086 0.914 27 H 0.261 0.739 28 H 0.044 0.956 29 H 0.077 0.923 30 H 0.010 0.990 31 H 0.089 0.911 32 H 0.028 0.972 33 H 0.117 0.883 34 H 0.118 0.882 35 H 0.137 0.863 36 H 0.132 0.868 37 H 0.131 0.869 38 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.777 -4.277 19.717 20.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.105 3.895 3 H 0.016 0.984 4 C -0.543 4.543 5 H 0.081 0.919 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.203 1.203 12 N -0.258 5.258 13 C -0.111 4.111 14 C -0.059 4.059 15 C -0.105 4.105 16 C -0.179 4.179 17 C -0.028 4.028 18 C -0.128 4.128 19 C -0.123 4.123 20 C -0.073 4.073 21 Cl -0.051 7.051 22 C -0.126 4.126 23 C -0.125 4.125 24 H 0.054 0.946 25 H 0.027 0.973 26 H 0.104 0.896 27 H 0.071 0.929 28 H 0.062 0.938 29 H 0.096 0.904 30 H 0.028 0.972 31 H 0.107 0.893 32 H 0.046 0.954 33 H 0.134 0.866 34 H 0.136 0.864 35 H 0.154 0.846 36 H 0.150 0.850 37 H 0.149 0.851 38 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 3.529 -4.715 19.662 20.525 hybrid contribution 0.692 0.319 -0.698 1.034 sum 4.221 -4.396 18.964 19.919 Atomic orbital electron populations 1.21872 0.97712 0.99735 0.99920 1.19263 0.92344 0.92042 0.85803 0.98401 1.21113 1.31162 1.12342 0.89720 0.91860 1.24935 0.95186 0.95079 0.99038 1.69880 1.36851 1.22977 1.23565 0.86573 0.79079 0.79775 0.82049 1.20189 1.21350 1.20337 1.62153 1.09477 1.52493 1.01718 1.22225 0.88578 0.98764 1.01534 1.21299 1.01453 0.93743 0.89376 1.23636 0.93636 0.99851 0.93421 1.21560 1.03208 0.99251 0.93879 1.19235 0.95840 0.93494 0.94215 1.21361 1.00035 0.93333 0.98043 1.20978 0.98195 1.00537 0.92623 1.20952 1.03193 0.92632 0.90569 1.98358 1.93777 1.69655 1.43330 1.20950 1.00415 0.92077 0.99204 1.21221 0.98632 0.99960 0.92705 0.94579 0.97255 0.89580 0.92898 0.93771 0.90442 0.97173 0.89343 0.95353 0.86564 0.86433 0.84552 0.84999 0.85124 0.85005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.20 8.76 37.16 0.33 -2.88 16 2 C 0.21 5.24 2.06 -68.86 -0.14 5.10 16 3 H 0.00 -0.04 8.14 -51.93 -0.42 -0.47 16 4 C -0.50 -13.61 7.88 -34.44 -0.27 -13.88 16 5 H 0.06 1.70 6.41 -52.48 -0.34 1.36 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 7 N -0.89 -25.17 11.32 55.43 0.63 -24.54 16 8 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 9 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 11 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 12 N -0.53 -11.18 4.61 -237.73 -1.10 -12.28 16 13 C 0.04 0.73 9.09 60.06 0.55 1.28 16 14 C 0.07 1.20 5.23 -4.98 -0.03 1.17 16 15 C -0.09 -1.24 8.04 -36.22 -0.29 -1.53 16 16 C -0.16 -2.01 9.52 -37.58 -0.36 -2.37 16 17 C -0.03 -0.32 5.87 -105.01 -0.62 -0.94 16 18 C -0.11 -1.22 9.40 -39.20 -0.37 -1.59 16 19 C -0.10 -1.09 9.81 -39.60 -0.39 -1.48 16 20 C -0.05 -0.49 6.32 -39.41 -0.25 -0.74 16 21 Cl -0.08 -0.77 28.95 -51.86 -1.50 -2.27 16 22 C -0.11 -1.06 9.81 -39.60 -0.39 -1.45 16 23 C -0.11 -1.10 9.78 -39.20 -0.38 -1.48 16 24 H 0.04 0.85 8.14 -51.93 -0.42 0.42 16 25 H 0.01 0.18 6.20 -51.93 -0.32 -0.14 16 26 H 0.09 2.26 6.07 -51.93 -0.32 1.94 16 27 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 28 H 0.04 0.75 7.28 -51.93 -0.38 0.38 16 29 H 0.08 1.62 6.10 -51.93 -0.32 1.30 16 30 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.09 1.55 5.83 -51.93 -0.30 1.25 16 32 H 0.03 0.49 7.79 -51.93 -0.40 0.09 16 33 H 0.12 1.58 6.04 -52.49 -0.32 1.26 16 34 H 0.12 1.40 7.87 -52.49 -0.41 0.98 16 35 H 0.14 1.42 6.17 -52.49 -0.32 1.09 16 36 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 37 H 0.13 1.03 8.06 -52.48 -0.42 0.61 16 38 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 LS Contribution 325.28 15.07 4.90 4.90 Total: -1.00 -27.97 325.28 -9.90 -37.86 By element: Atomic # 1 Polarization: 4.65 SS G_CDS: -5.10 Total: -0.46 kcal Atomic # 6 Polarization: -16.57 SS G_CDS: -2.71 Total: -19.27 kcal Atomic # 7 Polarization: -36.35 SS G_CDS: -0.47 Total: -36.82 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -1.50 Total: -2.27 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -27.97 -9.90 -37.86 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179451982.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.980 kcal (2) G-P(sol) polarization free energy of solvation -27.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.014 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds