Wall clock time and date at job start Tue Mar 31 2020 01:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47470 * 2 1 4 4 C 1.50702 * 109.47339 * 240.00179 * 2 1 3 5 5 H 1.08006 * 120.00041 * 239.99907 * 4 2 1 6 6 C 1.37883 * 119.99855 * 59.99854 * 4 2 1 7 7 N 1.31512 * 119.99850 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 119.99699 * 180.02562 * 6 4 2 9 9 H 1.48504 * 109.47373 * 59.99893 * 8 6 4 10 10 H 1.48504 * 109.47190 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.47265 * 299.99838 * 8 6 4 12 12 N 1.46901 * 109.47424 * 120.00054 * 2 1 3 13 13 C 1.46898 * 111.00353 * 176.04378 * 12 2 1 14 14 C 1.46899 * 110.99946 * 300.00455 * 12 2 1 15 15 C 1.50694 * 109.47270 * 169.99775 * 14 12 2 16 16 C 1.32574 * 120.00262 * 125.00112 * 15 14 12 17 17 C 1.47806 * 119.99908 * 180.27680 * 16 15 14 18 18 C 1.39544 * 120.12907 * 359.44357 * 17 16 15 19 19 C 1.37944 * 119.86715 * 179.71802 * 18 17 16 20 20 C 1.38470 * 120.13143 * 0.58618 * 19 18 17 21 21 Cl 1.73593 * 119.87502 * 179.69453 * 20 19 18 22 22 C 1.38471 * 120.25397 * 359.66932 * 20 19 18 23 23 C 1.37941 * 120.12996 * 0.04393 * 22 20 19 24 24 H 1.08998 * 109.46999 * 179.97438 * 1 2 3 25 25 H 1.08994 * 109.47246 * 300.00215 * 1 2 3 26 26 H 1.08997 * 109.46967 * 60.00038 * 1 2 3 27 27 H 0.97001 * 119.99140 * 179.97438 * 7 6 4 28 28 H 1.08999 * 109.46865 * 183.95150 * 13 12 2 29 29 H 1.08992 * 109.47204 * 303.95931 * 13 12 2 30 30 H 1.09005 * 109.46686 * 63.95914 * 13 12 2 31 31 H 1.09005 * 109.47277 * 49.99664 * 14 12 2 32 32 H 1.09004 * 109.46581 * 289.99841 * 14 12 2 33 33 H 1.08002 * 120.00184 * 304.99373 * 15 14 12 34 34 H 1.08002 * 119.99554 * 359.97438 * 16 15 14 35 35 H 1.07995 * 120.06522 * 359.97438 * 18 17 16 36 36 H 1.07997 * 119.94036 * 180.27210 * 19 18 17 37 37 H 1.08004 * 119.93182 * 180.02562 * 22 20 19 38 38 H 1.08007 * 120.06385 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6534 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4828 7 7 0.9436 0.8303 -2.6034 8 14 2.3214 -1.1202 -4.0079 9 1 1.8260 -2.5202 -4.0078 10 1 1.8260 -0.4205 -5.2205 11 1 3.8064 -1.1207 -4.0082 12 7 2.0197 -0.6925 1.1994 13 6 3.4851 -0.7946 1.1870 14 6 1.5487 -0.0265 2.4211 15 6 1.8580 -0.8912 3.6158 16 6 2.5568 -0.3974 4.6284 17 6 2.8654 -1.2475 5.7975 18 6 2.4125 -2.5666 5.8435 19 6 2.7086 -3.3569 6.9346 20 6 3.4433 -2.8400 7.9884 21 17 3.8052 -3.8382 9.3618 22 6 3.8907 -1.5302 7.9507 23 6 3.6058 -0.7322 6.8622 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 0.7096 1.1618 -3.4844 28 1 3.8164 -1.3722 2.0500 29 1 3.8070 -1.2915 0.2719 30 1 3.9192 0.2044 1.2301 31 1 0.4722 0.1323 2.3564 32 1 2.0519 0.9345 2.5280 33 1 1.5102 -1.9132 3.6473 34 1 2.9049 0.6245 4.5968 35 1 1.8350 -2.9691 5.0245 36 1 2.3625 -4.3793 6.9694 37 1 4.4637 -1.1325 8.7754 38 1 3.9550 0.2895 6.8341 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179451982.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:29:55 Heat of formation + Delta-G solvation = 22.378400 kcal Electronic energy + Delta-G solvation = -18454.508560 eV Core-core repulsion = 15515.425210 eV Total energy + Delta-G solvation = -2939.083350 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.31154 -38.95373 -37.49887 -35.65964 -34.32372 -32.08117 -31.46394 -30.56704 -28.16936 -26.49496 -25.03630 -23.99931 -22.95027 -21.22014 -20.28767 -18.33199 -18.25061 -17.11451 -16.65014 -16.30685 -15.92316 -15.56600 -15.21699 -14.85569 -14.52279 -14.44688 -14.29284 -13.79851 -13.69382 -13.03064 -12.92863 -12.81882 -12.72265 -12.64364 -12.58206 -12.31096 -12.14701 -12.06017 -11.93871 -11.67761 -11.56131 -11.01836 -10.73385 -10.49384 -10.02804 -9.00313 -8.93351 -8.10542 -6.22382 -0.19366 0.35054 1.16230 1.43279 1.45166 1.47299 1.52830 2.43305 2.83096 3.17637 3.40965 3.78298 3.79348 3.94592 4.21938 4.28991 4.37595 4.45680 4.56406 4.65270 4.73466 4.75962 4.80011 4.98312 5.01570 5.04397 5.09010 5.20821 5.26836 5.27935 5.35867 5.51553 5.66565 5.72880 5.77303 5.84598 5.89387 6.27165 6.39213 6.73988 6.92051 7.46708 8.95126 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.039888 B = 0.002715 C = 0.002647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.803849 B =10311.127939 C =10576.746966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.215 3.785 3 H -0.037 1.037 4 C -0.521 4.521 5 H 0.060 0.940 6 C 0.011 3.989 7 N -0.921 5.921 8 Si 0.959 3.041 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.272 1.272 12 N -0.540 5.540 13 C 0.044 3.956 14 C 0.074 3.926 15 C -0.109 4.109 16 C -0.132 4.132 17 C -0.050 4.050 18 C -0.114 4.114 19 C -0.112 4.112 20 C -0.051 4.051 21 Cl -0.074 7.074 22 C -0.111 4.111 23 C -0.103 4.103 24 H 0.032 0.968 25 H 0.033 0.967 26 H 0.059 0.941 27 H 0.262 0.738 28 H 0.071 0.929 29 H 0.058 0.942 30 H 0.005 0.995 31 H 0.082 0.918 32 H 0.026 0.974 33 H 0.122 0.878 34 H 0.126 0.874 35 H 0.140 0.860 36 H 0.145 0.855 37 H 0.151 0.849 38 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.622 -5.050 21.244 22.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.108 3.892 3 H -0.020 1.020 4 C -0.559 4.559 5 H 0.078 0.922 6 C -0.188 4.188 7 N -0.560 5.560 8 Si 0.785 3.215 9 H -0.197 1.197 10 H -0.210 1.210 11 H -0.197 1.197 12 N -0.265 5.265 13 C -0.104 4.104 14 C -0.053 4.053 15 C -0.128 4.128 16 C -0.151 4.151 17 C -0.050 4.050 18 C -0.132 4.132 19 C -0.130 4.130 20 C -0.078 4.078 21 Cl -0.045 7.045 22 C -0.129 4.129 23 C -0.121 4.121 24 H 0.051 0.949 25 H 0.052 0.948 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.090 0.910 29 H 0.077 0.923 30 H 0.024 0.976 31 H 0.100 0.900 32 H 0.045 0.955 33 H 0.140 0.860 34 H 0.143 0.857 35 H 0.158 0.842 36 H 0.163 0.837 37 H 0.168 0.832 38 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 4.379 -5.498 21.212 22.346 hybrid contribution 0.480 0.558 -0.990 1.233 sum 4.858 -4.940 20.222 21.376 Atomic orbital electron populations 1.21686 0.97189 0.99389 0.99845 1.19063 0.92759 0.90189 0.87204 1.01989 1.21419 1.31176 1.12354 0.90940 0.92164 1.25713 0.95385 0.95773 1.01910 1.70012 1.37756 1.24161 1.24112 0.85591 0.78702 0.78714 0.78499 1.19662 1.21031 1.19703 1.62077 1.10287 1.52345 1.01770 1.22163 0.87798 0.98702 1.01779 1.21259 1.00956 0.94142 0.88992 1.23294 0.96532 0.99918 0.93027 1.21676 1.00659 0.99480 0.93290 1.19276 0.97422 0.93775 0.94540 1.21489 0.99952 0.93382 0.98415 1.21157 0.98233 1.01212 0.92444 1.21161 1.02849 0.93082 0.90709 1.98363 1.93685 1.69525 1.42933 1.21209 1.00263 0.91806 0.99660 1.21468 0.97657 1.00900 0.92117 0.94859 0.94811 0.92173 0.92935 0.91036 0.92295 0.97602 0.89954 0.95542 0.86048 0.85654 0.84225 0.83700 0.83152 0.83089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.96 8.76 71.98 0.63 -5.33 16 2 C 0.21 10.87 2.06 44.17 0.09 10.96 16 3 H -0.04 -2.12 8.14 -2.39 -0.02 -2.14 16 4 C -0.52 -28.48 7.88 25.60 0.20 -28.28 16 5 H 0.06 3.26 6.41 -2.91 -0.02 3.24 16 6 C 0.01 0.59 5.30 84.66 0.45 1.04 16 7 N -0.92 -52.83 11.32 21.45 0.24 -52.59 16 8 Si 0.96 43.42 29.54 68.60 2.03 45.45 16 9 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 10 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 12 N -0.54 -22.67 4.61 -906.05 -4.18 -26.85 16 13 C 0.04 1.70 9.09 127.69 1.16 2.86 16 14 C 0.07 2.53 5.23 85.56 0.45 2.97 16 15 C -0.11 -2.97 8.04 24.53 0.20 -2.77 16 16 C -0.13 -3.07 9.52 23.65 0.23 -2.84 16 17 C -0.05 -1.06 5.87 -20.12 -0.12 -1.17 16 18 C -0.11 -2.34 9.40 22.52 0.21 -2.13 16 19 C -0.11 -2.10 9.81 22.26 0.22 -1.88 16 20 C -0.05 -0.95 6.32 22.38 0.14 -0.81 16 21 Cl -0.07 -1.27 28.95 -2.72 -0.08 -1.35 16 22 C -0.11 -1.87 9.81 22.25 0.22 -1.65 16 23 C -0.10 -1.84 9.78 22.51 0.22 -1.62 16 24 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 25 H 0.03 1.42 6.20 -2.39 -0.01 1.40 16 26 H 0.06 3.23 6.07 -2.39 -0.01 3.21 16 27 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 28 H 0.07 2.35 7.28 -2.39 -0.02 2.33 16 29 H 0.06 2.47 6.10 -2.39 -0.01 2.46 16 30 H 0.01 0.21 8.14 -2.38 -0.02 0.19 16 31 H 0.08 2.86 5.83 -2.38 -0.01 2.84 16 32 H 0.03 0.91 7.79 -2.38 -0.02 0.89 16 33 H 0.12 3.16 6.04 -2.91 -0.02 3.14 16 34 H 0.13 2.69 7.87 -2.91 -0.02 2.67 16 35 H 0.14 2.70 6.17 -2.91 -0.02 2.68 16 36 H 0.15 2.25 8.06 -2.91 -0.02 2.22 16 37 H 0.15 1.89 8.06 -2.91 -0.02 1.87 16 38 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -59.70 325.28 3.36 -56.35 By element: Atomic # 1 Polarization: 8.59 SS G_CDS: 1.05 Total: 9.64 kcal Atomic # 6 Polarization: -34.95 SS G_CDS: 4.29 Total: -30.65 kcal Atomic # 7 Polarization: -75.50 SS G_CDS: -3.94 Total: -79.43 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Atomic # 17 Polarization: -1.27 SS G_CDS: -0.08 Total: -1.35 kcal Total: -59.70 3.36 -56.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179451982.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.726 kcal (2) G-P(sol) polarization free energy of solvation -59.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.023 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.347 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds