Wall clock time and date at job start Tue Mar 31 2020 00:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47151 * 2 1 4 4 N 1.46505 * 109.46934 * 180.02562 * 3 2 1 5 5 C 1.36937 * 119.99685 * 269.94511 * 4 3 2 6 6 H 1.08002 * 119.99854 * 146.28671 * 5 4 3 7 7 C 1.38816 * 120.00049 * 326.28079 * 5 4 3 8 8 N 1.31617 * 120.00163 * 337.18031 * 7 5 4 9 9 Si 1.86799 * 119.99732 * 157.17861 * 7 5 4 10 10 H 1.48500 * 109.47241 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47242 * 120.00157 * 9 7 5 12 12 H 1.48505 * 109.47151 * 240.00152 * 9 7 5 13 13 C 1.46490 * 120.00164 * 89.94519 * 4 3 2 14 14 C 1.50706 * 109.47046 * 269.99874 * 13 4 3 15 15 C 1.32575 * 119.99940 * 125.00188 * 14 13 4 16 16 C 1.47801 * 120.00279 * 180.02562 * 15 14 13 17 17 C 1.39543 * 120.13415 * 179.97438 * 16 15 14 18 18 C 1.37940 * 119.87194 * 179.97438 * 17 16 15 19 19 C 1.38469 * 120.13100 * 0.27606 * 18 17 16 20 20 Cl 1.73597 * 119.87370 * 179.72124 * 19 18 17 21 21 C 1.38469 * 120.25556 * 359.44720 * 19 18 17 22 22 C 1.37946 * 120.12936 * 0.55121 * 21 19 18 23 23 H 1.09002 * 109.47280 * 60.00045 * 1 2 3 24 24 H 1.09000 * 109.47442 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47341 * 300.00159 * 1 2 3 26 26 H 1.08994 * 109.46938 * 239.99318 * 2 1 3 27 27 H 1.09009 * 109.46621 * 120.00008 * 2 1 3 28 28 H 1.09001 * 109.47128 * 59.99710 * 3 2 1 29 29 H 1.08997 * 109.46717 * 299.99753 * 3 2 1 30 30 H 0.96996 * 120.00146 * 179.97438 * 8 7 5 31 31 H 1.08996 * 109.47261 * 150.00148 * 13 4 3 32 32 H 1.08998 * 109.47572 * 29.99582 * 13 4 3 33 33 H 1.08002 * 120.00070 * 304.99913 * 14 13 4 34 34 H 1.08002 * 119.99990 * 359.97438 * 15 14 13 35 35 H 1.07998 * 120.05965 * 359.95312 * 17 16 15 36 36 H 1.07998 * 119.93716 * 179.97438 * 18 17 16 37 37 H 1.07999 * 119.93516 * 180.25060 * 21 19 18 38 38 H 1.07996 * 120.06690 * 179.74722 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1902 1.4434 1.1850 6 1 5.1340 0.9243 1.2637 7 6 3.6717 2.1116 2.2858 8 7 2.8048 3.0872 2.1151 9 14 4.2043 1.6262 4.0091 10 1 5.1792 0.5089 3.9297 11 1 4.8385 2.7906 4.6777 12 1 3.0179 1.1927 4.7902 13 6 4.2370 1.4414 -1.2695 14 6 4.4880 0.0201 -1.7035 15 6 4.0940 -0.3863 -2.9023 16 6 4.3395 -1.7802 -3.3278 17 6 3.9255 -2.2111 -4.5888 18 6 4.1579 -3.5131 -4.9806 19 6 4.7957 -4.3936 -4.1231 20 17 5.0784 -6.0327 -4.6201 21 6 5.2139 -3.9703 -2.8728 22 6 4.9870 -2.6706 -2.4701 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8901 28 1 1.6766 1.9563 0.8900 29 1 1.6767 1.9562 -0.8900 30 1 2.4423 3.5539 2.8842 31 1 5.1895 1.9552 -1.1400 32 1 3.6477 1.9545 -2.0294 33 1 4.9889 -0.6673 -1.0379 34 1 3.5927 0.3011 -3.5678 35 1 3.4237 -1.5265 -5.2566 36 1 3.8376 -3.8478 -5.9561 37 1 5.7144 -4.6603 -2.2097 38 1 5.3099 -2.3426 -1.4931 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000179554927.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:57 Heat of formation + Delta-G solvation = 38.919389 kcal Electronic energy + Delta-G solvation = -18833.864067 eV Core-core repulsion = 15895.497989 eV Total energy + Delta-G solvation = -2938.366079 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 2.45 seconds Orbital eigenvalues (eV) -39.28609 -36.75375 -36.34996 -34.00107 -32.38930 -31.28609 -31.11811 -29.15873 -25.73572 -25.43753 -23.16977 -22.52972 -21.28981 -20.02768 -18.99553 -17.27578 -16.67067 -15.63042 -15.17121 -14.94323 -14.31167 -14.08807 -13.58421 -13.56993 -13.45236 -13.21426 -13.02882 -12.43944 -12.03880 -11.77578 -11.68059 -11.39294 -11.28343 -11.15682 -10.89738 -10.81267 -10.77699 -10.55670 -10.32535 -10.05415 -9.95883 -9.61567 -9.42136 -9.08854 -8.52858 -7.78590 -6.67035 -5.81338 -3.38026 0.90336 1.29381 2.08061 2.73352 3.33048 3.42317 3.44383 3.88293 4.46055 4.72530 4.82950 4.96322 5.25831 5.29686 5.33876 5.46600 5.55947 5.71378 5.88270 5.94327 5.95435 6.04005 6.17048 6.21620 6.26580 6.33429 6.53220 6.55074 6.63265 6.68102 6.79595 6.91376 6.95872 7.08460 7.19209 7.29503 7.74215 7.81541 8.46186 9.14776 9.77953 10.33095 11.17478 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.022290 B = 0.003639 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.888005 B = 7692.569538 C = 8007.670237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.140 4.140 3 C 0.142 3.858 4 N -0.580 5.580 5 C -0.260 4.260 6 H 0.062 0.938 7 C 0.011 3.989 8 N -0.886 5.886 9 Si 0.896 3.104 10 H -0.276 1.276 11 H -0.290 1.290 12 H -0.288 1.288 13 C 0.162 3.838 14 C -0.094 4.094 15 C -0.178 4.178 16 C -0.019 4.019 17 C -0.112 4.112 18 C -0.107 4.107 19 C -0.052 4.052 20 Cl -0.084 7.084 21 C -0.104 4.104 22 C -0.113 4.113 23 H 0.044 0.956 24 H 0.038 0.962 25 H 0.049 0.951 26 H 0.042 0.958 27 H 0.054 0.946 28 H 0.101 0.899 29 H 0.019 0.981 30 H 0.254 0.746 31 H 0.063 0.937 32 H 0.043 0.957 33 H 0.106 0.894 34 H 0.115 0.885 35 H 0.131 0.869 36 H 0.129 0.871 37 H 0.130 0.870 38 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.371 -11.194 -12.013 16.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.180 4.180 3 C 0.017 3.983 4 N -0.299 5.299 5 C -0.390 4.390 6 H 0.080 0.920 7 C -0.189 4.189 8 N -0.529 5.529 9 Si 0.725 3.275 10 H -0.201 1.201 11 H -0.217 1.217 12 H -0.214 1.214 13 C 0.035 3.965 14 C -0.115 4.115 15 C -0.197 4.197 16 C -0.019 4.019 17 C -0.130 4.130 18 C -0.126 4.126 19 C -0.078 4.078 20 Cl -0.055 7.055 21 C -0.123 4.123 22 C -0.131 4.131 23 H 0.063 0.937 24 H 0.057 0.943 25 H 0.068 0.932 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.118 0.882 29 H 0.038 0.962 30 H 0.064 0.936 31 H 0.081 0.919 32 H 0.062 0.938 33 H 0.124 0.876 34 H 0.133 0.867 35 H 0.149 0.851 36 H 0.147 0.853 37 H 0.148 0.852 38 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.323 -11.185 -11.914 16.395 hybrid contribution 0.170 -0.578 0.875 1.062 sum 1.493 -11.763 -11.038 16.200 Atomic orbital electron populations 1.21694 0.97688 0.99874 1.00990 1.22096 0.93567 1.01647 1.00653 1.21092 0.83029 0.92470 1.01758 1.43828 1.01071 1.84916 1.00117 1.19086 1.05635 1.26651 0.87624 0.92010 1.25065 0.99733 0.95222 0.98918 1.69986 1.33303 1.20222 1.29351 0.86344 0.78094 0.78170 0.84881 1.20101 1.21651 1.21424 1.20069 0.96973 0.89992 0.89462 1.24750 0.92087 1.00897 0.93775 1.21461 1.06771 0.92956 0.98485 1.19335 0.95062 0.94330 0.93192 1.21198 1.00583 0.95128 0.96130 1.20918 0.99159 0.93148 0.99391 1.20898 1.04767 0.85923 0.96210 1.98347 1.95221 1.20472 1.91490 1.20957 1.00184 0.96537 0.94589 1.21366 0.99096 0.92411 1.00238 0.93703 0.94251 0.93150 0.93873 0.92731 0.88186 0.96207 0.93565 0.91929 0.93825 0.87573 0.86702 0.85149 0.85320 0.85214 0.84701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.47 9.91 37.16 0.37 -2.10 16 2 C -0.14 -2.81 6.26 -26.73 -0.17 -2.98 16 3 C 0.14 3.26 5.34 -4.04 -0.02 3.24 16 4 N -0.58 -13.78 2.44 -174.61 -0.43 -14.20 16 5 C -0.26 -6.83 9.49 -15.06 -0.14 -6.97 16 6 H 0.06 1.61 7.93 -52.49 -0.42 1.19 16 7 C 0.01 0.28 4.96 -17.43 -0.09 0.20 16 8 N -0.89 -24.83 11.29 55.49 0.63 -24.21 16 9 Si 0.90 21.06 29.61 -169.99 -5.03 16.03 16 10 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 13 C 0.16 3.19 6.15 -5.20 -0.03 3.15 16 14 C -0.09 -1.59 8.70 -36.21 -0.32 -1.91 16 15 C -0.18 -2.63 9.52 -37.58 -0.36 -2.99 16 16 C -0.02 -0.26 5.87 -105.01 -0.62 -0.88 16 17 C -0.11 -1.35 9.78 -39.20 -0.38 -1.73 16 18 C -0.11 -1.22 9.81 -39.61 -0.39 -1.61 16 19 C -0.05 -0.62 6.32 -39.41 -0.25 -0.87 16 20 Cl -0.08 -0.92 28.95 -51.86 -1.50 -2.42 16 21 C -0.10 -1.28 9.81 -39.60 -0.39 -1.67 16 22 C -0.11 -1.52 9.40 -39.20 -0.37 -1.89 16 23 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 24 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 26 H 0.04 0.84 7.57 -51.93 -0.39 0.45 16 27 H 0.05 1.19 8.14 -51.92 -0.42 0.76 16 28 H 0.10 2.62 5.29 -51.93 -0.27 2.35 16 29 H 0.02 0.43 7.89 -51.93 -0.41 0.02 16 30 H 0.25 6.87 8.31 -40.82 -0.34 6.53 16 31 H 0.06 1.25 8.04 -51.93 -0.42 0.84 16 32 H 0.04 0.81 7.56 -51.93 -0.39 0.42 16 33 H 0.11 1.82 6.04 -52.49 -0.32 1.51 16 34 H 0.12 1.58 7.87 -52.49 -0.41 1.17 16 35 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 36 H 0.13 1.20 8.06 -52.49 -0.42 0.77 16 37 H 0.13 1.38 8.06 -52.49 -0.42 0.96 16 38 H 0.14 1.79 6.17 -52.49 -0.32 1.47 16 LS Contribution 334.33 15.07 5.04 5.04 Total: -1.00 -27.48 334.33 -9.90 -37.38 By element: Atomic # 1 Polarization: 6.84 SS G_CDS: -5.45 Total: 1.39 kcal Atomic # 6 Polarization: -15.85 SS G_CDS: -3.15 Total: -19.00 kcal Atomic # 7 Polarization: -38.61 SS G_CDS: 0.20 Total: -38.41 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.03 Total: 16.03 kcal Atomic # 17 Polarization: -0.92 SS G_CDS: -1.50 Total: -2.42 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -27.48 -9.90 -37.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179554927.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.295 kcal (2) G-P(sol) polarization free energy of solvation -27.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.45 seconds