Wall clock time and date at job start Tue Mar 31 2020 00:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47151 * 2 1 4 4 N 1.46505 * 109.46934 * 180.02562 * 3 2 1 5 5 C 1.36937 * 119.99685 * 269.94511 * 4 3 2 6 6 H 1.08002 * 119.99854 * 146.28671 * 5 4 3 7 7 C 1.38816 * 120.00049 * 326.28079 * 5 4 3 8 8 N 1.31617 * 120.00163 * 337.18031 * 7 5 4 9 9 Si 1.86799 * 119.99732 * 157.17861 * 7 5 4 10 10 H 1.48500 * 109.47241 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47242 * 120.00157 * 9 7 5 12 12 H 1.48505 * 109.47151 * 240.00152 * 9 7 5 13 13 C 1.46490 * 120.00164 * 89.94519 * 4 3 2 14 14 C 1.50706 * 109.47046 * 269.99874 * 13 4 3 15 15 C 1.32575 * 119.99940 * 125.00188 * 14 13 4 16 16 C 1.47801 * 120.00279 * 180.02562 * 15 14 13 17 17 C 1.39543 * 120.13415 * 179.97438 * 16 15 14 18 18 C 1.37940 * 119.87194 * 179.97438 * 17 16 15 19 19 C 1.38469 * 120.13100 * 0.27606 * 18 17 16 20 20 Cl 1.73597 * 119.87370 * 179.72124 * 19 18 17 21 21 C 1.38469 * 120.25556 * 359.44720 * 19 18 17 22 22 C 1.37946 * 120.12936 * 0.55121 * 21 19 18 23 23 H 1.09002 * 109.47280 * 60.00045 * 1 2 3 24 24 H 1.09000 * 109.47442 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47341 * 300.00159 * 1 2 3 26 26 H 1.08994 * 109.46938 * 239.99318 * 2 1 3 27 27 H 1.09009 * 109.46621 * 120.00008 * 2 1 3 28 28 H 1.09001 * 109.47128 * 59.99710 * 3 2 1 29 29 H 1.08997 * 109.46717 * 299.99753 * 3 2 1 30 30 H 0.96996 * 120.00146 * 179.97438 * 8 7 5 31 31 H 1.08996 * 109.47261 * 150.00148 * 13 4 3 32 32 H 1.08998 * 109.47572 * 29.99582 * 13 4 3 33 33 H 1.08002 * 120.00070 * 304.99913 * 14 13 4 34 34 H 1.08002 * 119.99990 * 359.97438 * 15 14 13 35 35 H 1.07998 * 120.05965 * 359.95312 * 17 16 15 36 36 H 1.07998 * 119.93716 * 179.97438 * 18 17 16 37 37 H 1.07999 * 119.93516 * 180.25060 * 21 19 18 38 38 H 1.07996 * 120.06690 * 179.74722 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1902 1.4434 1.1850 6 1 5.1340 0.9243 1.2637 7 6 3.6717 2.1116 2.2858 8 7 2.8048 3.0872 2.1151 9 14 4.2043 1.6262 4.0091 10 1 5.1792 0.5089 3.9297 11 1 4.8385 2.7906 4.6777 12 1 3.0179 1.1927 4.7902 13 6 4.2370 1.4414 -1.2695 14 6 4.4880 0.0201 -1.7035 15 6 4.0940 -0.3863 -2.9023 16 6 4.3395 -1.7802 -3.3278 17 6 3.9255 -2.2111 -4.5888 18 6 4.1579 -3.5131 -4.9806 19 6 4.7957 -4.3936 -4.1231 20 17 5.0784 -6.0327 -4.6201 21 6 5.2139 -3.9703 -2.8728 22 6 4.9870 -2.6706 -2.4701 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8901 28 1 1.6766 1.9563 0.8900 29 1 1.6767 1.9562 -0.8900 30 1 2.4423 3.5539 2.8842 31 1 5.1895 1.9552 -1.1400 32 1 3.6477 1.9545 -2.0294 33 1 4.9889 -0.6673 -1.0379 34 1 3.5927 0.3011 -3.5678 35 1 3.4237 -1.5265 -5.2566 36 1 3.8376 -3.8478 -5.9561 37 1 5.7144 -4.6603 -2.2097 38 1 5.3099 -2.3426 -1.4931 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000179554927.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:54 Heat of formation + Delta-G solvation = 28.155096 kcal Electronic energy + Delta-G solvation = -18834.330842 eV Core-core repulsion = 15895.497989 eV Total energy + Delta-G solvation = -2938.832853 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.26735 -38.25755 -37.46083 -35.32689 -34.12843 -32.89580 -32.06856 -30.49493 -27.38032 -27.07741 -24.34190 -23.77050 -22.61155 -21.76678 -20.22945 -18.57740 -18.25874 -16.95880 -16.60888 -16.19511 -15.86707 -15.54255 -15.05561 -14.87001 -14.51357 -14.46307 -14.36408 -13.83827 -13.50208 -13.10485 -13.03953 -12.84184 -12.70980 -12.57048 -12.39476 -12.27664 -12.17452 -12.01517 -11.81248 -11.70139 -11.59547 -11.29785 -10.70828 -10.50491 -10.02463 -8.93215 -8.59291 -7.79679 -5.40204 -0.14225 0.35407 1.16012 1.44333 1.48328 1.55931 1.59433 2.52417 2.86575 3.24337 3.71720 3.82091 3.89013 3.94799 4.27055 4.34069 4.35710 4.42187 4.51368 4.65411 4.73415 4.77350 4.84482 4.91185 5.01772 5.09117 5.14497 5.23792 5.27853 5.31868 5.37815 5.42739 5.57229 5.69195 5.78150 5.86177 5.93816 5.98928 6.47982 7.18382 7.88987 8.38599 9.14748 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.022290 B = 0.003639 C = 0.003496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1255.888005 B = 7692.569538 C = 8007.670237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.126 4.126 3 C 0.144 3.856 4 N -0.597 5.597 5 C -0.263 4.263 6 H 0.057 0.943 7 C -0.038 4.038 8 N -0.916 5.916 9 Si 0.952 3.048 10 H -0.269 1.269 11 H -0.291 1.291 12 H -0.290 1.290 13 C 0.164 3.836 14 C -0.122 4.122 15 C -0.144 4.144 16 C -0.045 4.045 17 C -0.104 4.104 18 C -0.108 4.108 19 C -0.053 4.053 20 Cl -0.073 7.073 21 C -0.112 4.112 22 C -0.121 4.121 23 H 0.059 0.941 24 H 0.060 0.940 25 H 0.041 0.959 26 H 0.050 0.950 27 H 0.030 0.970 28 H 0.068 0.932 29 H 0.025 0.975 30 H 0.251 0.749 31 H 0.050 0.950 32 H 0.053 0.947 33 H 0.098 0.902 34 H 0.130 0.870 35 H 0.154 0.846 36 H 0.154 0.846 37 H 0.142 0.858 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.021 -12.944 -13.841 18.977 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.166 4.166 3 C 0.018 3.982 4 N -0.317 5.317 5 C -0.393 4.393 6 H 0.075 0.925 7 C -0.235 4.235 8 N -0.561 5.561 9 Si 0.781 3.219 10 H -0.193 1.193 11 H -0.218 1.218 12 H -0.217 1.217 13 C 0.039 3.961 14 C -0.142 4.142 15 C -0.163 4.163 16 C -0.045 4.045 17 C -0.122 4.122 18 C -0.126 4.126 19 C -0.079 4.079 20 Cl -0.045 7.045 21 C -0.130 4.130 22 C -0.139 4.139 23 H 0.078 0.922 24 H 0.079 0.921 25 H 0.060 0.940 26 H 0.069 0.931 27 H 0.049 0.951 28 H 0.086 0.914 29 H 0.043 0.957 30 H 0.060 0.940 31 H 0.068 0.932 32 H 0.071 0.929 33 H 0.116 0.884 34 H 0.148 0.852 35 H 0.172 0.828 36 H 0.171 0.829 37 H 0.160 0.840 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.989 -12.957 -13.766 18.930 hybrid contribution 0.314 -0.151 1.260 1.308 sum 1.303 -13.107 -12.506 18.163 Atomic orbital electron populations 1.21639 0.95211 1.01426 1.01344 1.21900 0.95648 0.99291 0.99776 1.20988 0.82900 0.93956 1.00331 1.44033 1.01566 1.85299 1.00850 1.19293 1.05441 1.25613 0.88969 0.92486 1.25694 1.00424 0.95490 1.01858 1.70105 1.34797 1.21416 1.29797 0.85453 0.77573 0.77795 0.81112 1.19343 1.21773 1.21723 1.20068 0.96039 0.91939 0.88035 1.24200 0.95722 0.99098 0.95181 1.21620 1.03662 0.93682 0.97290 1.19370 0.96918 0.93788 0.94451 1.21466 0.99527 0.95778 0.95441 1.21220 0.98429 0.92736 1.00262 1.21100 1.04103 0.86608 0.96135 1.98356 1.95117 1.19657 1.91323 1.21106 1.00395 0.96339 0.95197 1.21425 0.99294 0.93058 1.00164 0.92202 0.92057 0.93978 0.93106 0.95096 0.91443 0.95682 0.93973 0.93209 0.92860 0.88435 0.85225 0.82813 0.82878 0.84039 0.85395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.51 9.91 71.98 0.71 -3.80 16 2 C -0.13 -5.03 6.26 30.59 0.19 -4.84 16 3 C 0.14 6.68 5.34 86.38 0.46 7.14 16 4 N -0.60 -28.90 2.44 -706.35 -1.72 -30.62 16 5 C -0.26 -14.10 9.49 84.03 0.80 -13.30 16 6 H 0.06 3.04 7.93 -2.91 -0.02 3.02 16 7 C -0.04 -2.06 4.96 84.86 0.42 -1.64 16 8 N -0.92 -52.80 11.29 21.65 0.24 -52.55 16 9 Si 0.95 44.17 29.61 68.60 2.03 46.20 16 10 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 11 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 12 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 13 C 0.16 6.55 6.15 85.64 0.53 7.08 16 14 C -0.12 -4.09 8.70 24.53 0.21 -3.87 16 15 C -0.14 -4.01 9.52 23.65 0.23 -3.79 16 16 C -0.05 -1.15 5.87 -20.11 -0.12 -1.27 16 17 C -0.10 -2.16 9.78 22.51 0.22 -1.94 16 18 C -0.11 -2.10 9.81 22.25 0.22 -1.88 16 19 C -0.05 -1.14 6.32 22.38 0.14 -1.00 16 20 Cl -0.07 -1.42 28.95 -2.72 -0.08 -1.50 16 21 C -0.11 -2.56 9.81 22.26 0.22 -2.35 16 22 C -0.12 -3.13 9.40 22.52 0.21 -2.92 16 23 H 0.06 1.77 8.14 -2.39 -0.02 1.75 16 24 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 25 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.05 1.92 7.57 -2.39 -0.02 1.90 16 27 H 0.03 1.34 8.14 -2.38 -0.02 1.33 16 28 H 0.07 3.64 5.29 -2.39 -0.01 3.62 16 29 H 0.02 1.10 7.89 -2.39 -0.02 1.08 16 30 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 31 H 0.05 2.05 8.04 -2.39 -0.02 2.03 16 32 H 0.05 1.97 7.56 -2.39 -0.02 1.95 16 33 H 0.10 3.43 6.04 -2.91 -0.02 3.42 16 34 H 0.13 3.22 7.87 -2.91 -0.02 3.19 16 35 H 0.15 2.43 8.06 -2.91 -0.02 2.40 16 36 H 0.15 2.21 8.06 -2.91 -0.02 2.18 16 37 H 0.14 2.81 8.06 -2.91 -0.02 2.78 16 38 H 0.13 3.42 6.17 -2.91 -0.02 3.40 16 Total: -1.00 -59.22 334.33 5.95 -53.27 By element: Atomic # 1 Polarization: 12.53 SS G_CDS: 1.03 Total: 13.56 kcal Atomic # 6 Polarization: -32.81 SS G_CDS: 4.44 Total: -28.36 kcal Atomic # 7 Polarization: -81.69 SS G_CDS: -1.48 Total: -83.17 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Atomic # 17 Polarization: -1.42 SS G_CDS: -0.08 Total: -1.50 kcal Total: -59.22 5.95 -53.27 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000179554927.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.422 kcal (2) G-P(sol) polarization free energy of solvation -59.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds