Wall clock time and date at job start Tue Mar 31 2020 01:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37095 * 120.00128 * 2 1 4 4 H 1.08006 * 120.00376 * 202.63435 * 3 2 1 5 5 C 1.38945 * 120.00243 * 22.63145 * 3 2 1 6 6 N 1.31413 * 119.99641 * 10.49781 * 5 3 2 7 7 Si 1.86797 * 120.00289 * 190.49508 * 5 3 2 8 8 H 1.48500 * 109.46989 * 90.00126 * 7 5 3 9 9 H 1.48503 * 109.47132 * 210.00133 * 7 5 3 10 10 H 1.48496 * 109.47278 * 330.00408 * 7 5 3 11 11 C 1.34780 * 119.99860 * 179.97438 * 2 1 3 12 12 O 1.21292 * 119.99780 * 179.97438 * 11 2 1 13 13 C 1.50700 * 120.00058 * 0.28020 * 11 2 1 14 14 C 1.53007 * 109.46795 * 299.71972 * 13 11 2 15 15 C 1.52999 * 109.46806 * 300.00234 * 14 13 11 16 16 C 1.52997 * 109.47350 * 299.99519 * 15 14 13 17 17 C 1.52999 * 109.47350 * 180.02562 * 16 15 14 18 18 F 1.39893 * 109.47530 * 300.00786 * 17 16 15 19 19 F 1.39902 * 109.46698 * 60.00375 * 17 16 15 20 20 F 1.39898 * 109.47629 * 180.02562 * 17 16 15 21 21 C 1.53007 * 109.46774 * 60.00461 * 16 15 14 22 22 C 1.52993 * 109.47086 * 299.99853 * 21 16 15 23 23 H 1.09000 * 109.46570 * 273.23762 * 1 2 3 24 24 H 1.08994 * 109.47145 * 33.23729 * 1 2 3 25 25 H 1.09004 * 109.46994 * 153.23763 * 1 2 3 26 26 H 0.96998 * 119.99896 * 180.02562 * 6 5 3 27 27 H 1.08997 * 109.47294 * 59.71592 * 13 11 2 28 28 H 1.08996 * 109.46736 * 60.00041 * 14 13 11 29 29 H 1.08989 * 109.47085 * 180.02562 * 14 13 11 30 30 H 1.09003 * 109.46752 * 180.02562 * 15 14 13 31 31 H 1.08996 * 109.47770 * 60.00242 * 15 14 13 32 32 H 1.08994 * 109.47147 * 300.00495 * 16 15 14 33 33 H 1.09003 * 109.46892 * 179.97438 * 21 16 15 34 34 H 1.09004 * 109.46760 * 59.99935 * 21 16 15 35 35 H 1.08994 * 109.47275 * 300.00236 * 22 21 16 36 36 H 1.09003 * 109.47032 * 179.97438 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1682 1.2233 -0.3600 5 6 1.5361 2.3443 0.4630 6 7 0.3828 2.2705 1.0887 7 14 2.3494 4.0046 0.1963 8 1 1.8937 4.5771 -1.0960 9 1 1.9765 4.9220 1.3030 10 1 3.8244 3.8348 0.1697 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1672 0.0001 13 6 1.3854 -2.4723 -0.0053 14 6 0.5058 -2.5588 1.2437 15 6 1.3855 -2.4833 2.4932 16 6 2.3796 -3.6462 2.4881 17 6 3.2589 -3.5710 3.7380 18 9 3.9584 -2.3595 3.7439 19 9 2.4542 -3.6504 4.8796 20 9 4.1684 -4.6340 3.7331 21 6 3.2593 -3.5597 1.2392 22 6 2.3796 -3.6353 -0.0103 23 1 -0.3632 0.0580 1.0261 24 1 -0.3633 0.8595 -0.5632 25 1 -0.3633 -0.9176 -0.4628 26 1 -0.0463 3.0782 1.4116 27 1 0.7587 -2.5261 -0.8954 28 1 -0.2025 -1.7304 1.2473 29 1 -0.0389 -3.5029 1.2398 30 1 0.7588 -2.5454 3.3829 31 1 1.9305 -1.5393 2.4974 32 1 1.8346 -4.5901 2.4840 33 1 3.9679 -4.3879 1.2358 34 1 3.8043 -2.6157 1.2434 35 1 1.8346 -4.5791 -0.0144 36 1 3.0063 -3.5732 -0.9001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000216295326.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:49 Heat of formation + Delta-G solvation = -196.801768 kcal Electronic energy + Delta-G solvation = -23746.478688 eV Core-core repulsion = 19815.325068 eV Total energy + Delta-G solvation = -3931.153620 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -49.83587 -47.36335 -47.24314 -39.73016 -36.73922 -34.69829 -32.18230 -31.16799 -30.27951 -26.45912 -25.73122 -24.40962 -22.43285 -21.96916 -20.50426 -18.45327 -17.99608 -17.79964 -17.23631 -16.86934 -15.82203 -15.23352 -14.56354 -14.36737 -14.26573 -14.13812 -13.77421 -13.64906 -13.49435 -13.44455 -13.35650 -13.06079 -12.77314 -12.25578 -12.01420 -11.95043 -11.60783 -11.39193 -11.16682 -11.12523 -10.87818 -10.61350 -10.49059 -10.32990 -10.22909 -9.96821 -9.77909 -8.98988 -8.18279 -7.65944 -6.29667 -3.86758 3.04441 3.16823 3.25856 3.31347 3.89280 4.06756 4.14839 4.27559 4.33784 4.83059 4.99728 5.06604 5.15037 5.31980 5.40327 5.51295 5.59465 5.65775 5.78235 5.80779 6.08126 6.18300 6.21716 6.30170 6.40522 6.47215 6.56168 6.59804 6.85580 6.92437 7.22795 7.57869 8.15480 8.50516 9.21355 9.45236 10.01259 10.73488 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.022026 B = 0.006088 C = 0.005638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.904685 B = 4598.254947 C = 4964.912888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.446 5.446 3 C -0.305 4.305 4 H 0.098 0.902 5 C 0.030 3.970 6 N -0.885 5.885 7 Si 0.924 3.076 8 H -0.279 1.279 9 H -0.284 1.284 10 H -0.270 1.270 11 C 0.453 3.547 12 O -0.584 6.584 13 C -0.106 4.106 14 C -0.114 4.114 15 C -0.118 4.118 16 C -0.126 4.126 17 C 0.451 3.549 18 F -0.176 7.176 19 F -0.190 7.190 20 F -0.190 7.190 21 C -0.132 4.132 22 C -0.084 4.084 23 H 0.062 0.938 24 H 0.065 0.935 25 H 0.028 0.972 26 H 0.266 0.734 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.086 0.914 32 H 0.103 0.897 33 H 0.062 0.938 34 H 0.115 0.885 35 H 0.057 0.943 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.975 -11.241 1.896 11.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.164 5.164 3 C -0.433 4.433 4 H 0.116 0.884 5 C -0.172 4.172 6 N -0.524 5.524 7 Si 0.752 3.248 8 H -0.205 1.205 9 H -0.210 1.210 10 H -0.194 1.194 11 C 0.241 3.759 12 O -0.470 6.470 13 C -0.127 4.127 14 C -0.152 4.152 15 C -0.156 4.156 16 C -0.145 4.145 17 C 0.397 3.603 18 F -0.157 7.157 19 F -0.172 7.172 20 F -0.172 7.172 21 C -0.169 4.169 22 C -0.122 4.122 23 H 0.080 0.920 24 H 0.083 0.917 25 H 0.046 0.954 26 H 0.077 0.923 27 H 0.101 0.899 28 H 0.108 0.892 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.104 0.896 32 H 0.122 0.878 33 H 0.081 0.919 34 H 0.133 0.867 35 H 0.076 0.924 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.507 -11.063 2.014 11.346 hybrid contribution 0.226 0.893 0.259 0.957 sum -1.282 -10.170 2.273 10.499 Atomic orbital electron populations 1.21635 0.81482 0.98440 1.01682 1.43566 1.05349 1.04793 1.62674 1.19658 0.99514 0.83998 1.40094 0.88439 1.25311 0.96482 0.99972 0.95462 1.69979 1.16909 1.29186 1.36357 0.85946 0.79721 0.81417 0.77763 1.20470 1.20982 1.19411 1.19928 0.87949 0.84615 0.83407 1.90431 1.13972 1.86785 1.55779 1.21243 0.97483 0.95125 0.98884 1.21704 0.97732 1.02912 0.92838 1.21585 0.97047 0.97874 0.99047 1.22502 0.97087 1.03134 0.91794 1.20780 0.79872 0.73509 0.86144 1.93214 1.80372 1.45380 1.96741 1.93141 1.73341 1.96045 1.54626 1.93135 1.69625 1.57558 1.96843 1.21897 0.97634 1.05787 0.91550 1.21141 0.96813 0.96151 0.98076 0.91978 0.91654 0.95379 0.92340 0.89913 0.89248 0.91832 0.91193 0.89583 0.87846 0.91938 0.86741 0.92401 0.91030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.37 7.05 59.85 0.42 2.79 16 2 N -0.45 -10.93 3.02 -122.19 -0.37 -11.30 16 3 C -0.30 -8.32 9.29 -14.94 -0.14 -8.46 16 4 H 0.10 2.81 7.41 -52.48 -0.39 2.42 16 5 C 0.03 0.80 5.14 -17.47 -0.09 0.71 16 6 N -0.88 -23.10 10.56 55.50 0.59 -22.51 16 7 Si 0.92 20.75 29.57 -169.99 -5.03 15.73 16 8 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 9 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 10 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 11 C 0.45 10.32 5.51 -10.98 -0.06 10.26 16 12 O -0.58 -15.13 13.35 5.55 0.07 -15.06 16 13 C -0.11 -1.80 2.20 -91.77 -0.20 -2.00 16 14 C -0.11 -1.73 5.07 -26.73 -0.14 -1.86 16 15 C -0.12 -1.91 4.74 -26.73 -0.13 -2.04 16 16 C -0.13 -1.85 2.16 -90.62 -0.20 -2.04 16 17 C 0.45 7.05 2.69 37.16 0.10 7.15 16 18 F -0.18 -3.23 16.28 2.25 0.04 -3.19 16 19 F -0.19 -2.90 16.80 2.25 0.04 -2.86 16 20 F -0.19 -2.86 16.80 2.25 0.04 -2.82 16 21 C -0.13 -2.12 4.67 -26.73 -0.12 -2.25 16 22 C -0.08 -1.27 5.09 -26.73 -0.14 -1.41 16 23 H 0.06 1.37 6.51 -51.93 -0.34 1.03 16 24 H 0.06 1.49 7.12 -51.93 -0.37 1.12 16 25 H 0.03 0.49 5.75 -51.93 -0.30 0.19 16 26 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 27 H 0.08 1.28 7.40 -51.93 -0.38 0.89 16 28 H 0.09 1.43 4.60 -51.93 -0.24 1.19 16 29 H 0.06 0.77 8.14 -51.94 -0.42 0.34 16 30 H 0.07 1.02 7.80 -51.93 -0.41 0.62 16 31 H 0.09 1.76 6.88 -51.93 -0.36 1.40 16 32 H 0.10 1.24 8.14 -51.93 -0.42 0.81 16 33 H 0.06 0.90 7.80 -51.93 -0.41 0.49 16 34 H 0.11 2.33 5.17 -51.93 -0.27 2.06 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.07 1.14 8.10 -51.93 -0.42 0.72 16 LS Contribution 288.58 15.07 4.35 4.35 Total: -1.00 -29.06 288.58 -5.24 -34.30 By element: Atomic # 1 Polarization: 6.79 SS G_CDS: -4.28 Total: 2.51 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: -0.69 Total: 0.85 kcal Atomic # 7 Polarization: -34.02 SS G_CDS: 0.22 Total: -33.81 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: 0.07 Total: -15.06 kcal Atomic # 9 Polarization: -8.98 SS G_CDS: 0.11 Total: -8.87 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.03 Total: 15.73 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -29.06 -5.24 -34.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216295326.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.503 kcal (2) G-P(sol) polarization free energy of solvation -29.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.299 kcal (6) G-S(sol) free energy of system = (1) + (5) -196.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds