Wall clock time and date at job start Tue Mar 31 2020 01:46:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.37095 * 120.00128 * 2 1 4 4 H 1.08006 * 120.00376 * 202.63435 * 3 2 1 5 5 C 1.38945 * 120.00243 * 22.63145 * 3 2 1 6 6 N 1.31413 * 119.99641 * 10.49781 * 5 3 2 7 7 Si 1.86797 * 120.00289 * 190.49508 * 5 3 2 8 8 H 1.48500 * 109.46989 * 90.00126 * 7 5 3 9 9 H 1.48503 * 109.47132 * 210.00133 * 7 5 3 10 10 H 1.48496 * 109.47278 * 330.00408 * 7 5 3 11 11 C 1.34780 * 119.99860 * 179.97438 * 2 1 3 12 12 O 1.21292 * 119.99780 * 179.97438 * 11 2 1 13 13 C 1.50700 * 120.00058 * 0.28020 * 11 2 1 14 14 C 1.53007 * 109.46795 * 299.71972 * 13 11 2 15 15 C 1.52999 * 109.46806 * 300.00234 * 14 13 11 16 16 C 1.52997 * 109.47350 * 299.99519 * 15 14 13 17 17 C 1.52999 * 109.47350 * 180.02562 * 16 15 14 18 18 F 1.39893 * 109.47530 * 300.00786 * 17 16 15 19 19 F 1.39902 * 109.46698 * 60.00375 * 17 16 15 20 20 F 1.39898 * 109.47629 * 180.02562 * 17 16 15 21 21 C 1.53007 * 109.46774 * 60.00461 * 16 15 14 22 22 C 1.52993 * 109.47086 * 299.99853 * 21 16 15 23 23 H 1.09000 * 109.46570 * 273.23762 * 1 2 3 24 24 H 1.08994 * 109.47145 * 33.23729 * 1 2 3 25 25 H 1.09004 * 109.46994 * 153.23763 * 1 2 3 26 26 H 0.96998 * 119.99896 * 180.02562 * 6 5 3 27 27 H 1.08997 * 109.47294 * 59.71592 * 13 11 2 28 28 H 1.08996 * 109.46736 * 60.00041 * 14 13 11 29 29 H 1.08989 * 109.47085 * 180.02562 * 14 13 11 30 30 H 1.09003 * 109.46752 * 180.02562 * 15 14 13 31 31 H 1.08996 * 109.47770 * 60.00242 * 15 14 13 32 32 H 1.08994 * 109.47147 * 300.00495 * 16 15 14 33 33 H 1.09003 * 109.46892 * 179.97438 * 21 16 15 34 34 H 1.09004 * 109.46760 * 59.99935 * 21 16 15 35 35 H 1.08994 * 109.47275 * 300.00236 * 22 21 16 36 36 H 1.09003 * 109.47032 * 179.97438 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1682 1.2233 -0.3600 5 6 1.5361 2.3443 0.4630 6 7 0.3828 2.2705 1.0887 7 14 2.3494 4.0046 0.1963 8 1 1.8937 4.5771 -1.0960 9 1 1.9765 4.9220 1.3030 10 1 3.8244 3.8348 0.1697 11 6 2.1389 -1.1672 0.0005 12 8 3.3518 -1.1672 0.0001 13 6 1.3854 -2.4723 -0.0053 14 6 0.5058 -2.5588 1.2437 15 6 1.3855 -2.4833 2.4932 16 6 2.3796 -3.6462 2.4881 17 6 3.2589 -3.5710 3.7380 18 9 3.9584 -2.3595 3.7439 19 9 2.4542 -3.6504 4.8796 20 9 4.1684 -4.6340 3.7331 21 6 3.2593 -3.5597 1.2392 22 6 2.3796 -3.6353 -0.0103 23 1 -0.3632 0.0580 1.0261 24 1 -0.3633 0.8595 -0.5632 25 1 -0.3633 -0.9176 -0.4628 26 1 -0.0463 3.0782 1.4116 27 1 0.7587 -2.5261 -0.8954 28 1 -0.2025 -1.7304 1.2473 29 1 -0.0389 -3.5029 1.2398 30 1 0.7588 -2.5454 3.3829 31 1 1.9305 -1.5393 2.4974 32 1 1.8346 -4.5901 2.4840 33 1 3.9679 -4.3879 1.2358 34 1 3.8043 -2.6157 1.2434 35 1 1.8346 -4.5791 -0.0144 36 1 3.0063 -3.5732 -0.9001 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000216295326.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:46:48 Heat of formation + Delta-G solvation = -213.828333 kcal Electronic energy + Delta-G solvation = -23747.217015 eV Core-core repulsion = 19815.325068 eV Total energy + Delta-G solvation = -3931.891947 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 279.119 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -51.10017 -48.58080 -48.57566 -41.27522 -38.27644 -36.57753 -33.89865 -32.67991 -31.58556 -28.25300 -27.20789 -26.11360 -23.67149 -23.38559 -21.89652 -19.95386 -19.25163 -19.19703 -18.82156 -18.48903 -17.52760 -16.65575 -16.34137 -15.99125 -15.59053 -15.51592 -15.21937 -15.03813 -14.77879 -14.74336 -14.71313 -14.47684 -14.34425 -13.74573 -13.54295 -13.36170 -13.04923 -12.98540 -12.78541 -12.69548 -12.50261 -12.21091 -12.15132 -11.92391 -11.77754 -11.22440 -11.07473 -10.89831 -9.97085 -9.58820 -8.28047 -5.92707 1.36028 1.39164 1.50410 1.82024 2.14823 2.29186 2.84068 3.03484 3.11076 3.14458 3.20882 3.76816 3.81126 4.02997 4.11305 4.26961 4.32537 4.41556 4.44282 4.62573 4.70414 4.90149 4.97130 5.03036 5.07197 5.14348 5.24570 5.28580 5.38021 5.47182 5.52185 5.61443 6.16524 6.56262 7.25141 7.59276 8.16143 8.72427 Molecular weight = 279.12amu Principal moments of inertia in cm(-1) A = 0.022026 B = 0.006088 C = 0.005638 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.904685 B = 4598.254947 C = 4964.912888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.124 3.876 2 N -0.466 5.466 3 C -0.339 4.339 4 H 0.066 0.934 5 C -0.003 4.003 6 N -0.896 5.896 7 Si 0.981 3.019 8 H -0.266 1.266 9 H -0.275 1.275 10 H -0.280 1.280 11 C 0.446 3.554 12 O -0.625 6.625 13 C -0.101 4.101 14 C -0.109 4.109 15 C -0.118 4.118 16 C -0.116 4.116 17 C 0.448 3.552 18 F -0.200 7.200 19 F -0.186 7.186 20 F -0.185 7.185 21 C -0.132 4.132 22 C -0.080 4.080 23 H 0.051 0.949 24 H 0.043 0.957 25 H 0.072 0.928 26 H 0.270 0.730 27 H 0.109 0.891 28 H 0.079 0.921 29 H 0.116 0.884 30 H 0.086 0.914 31 H 0.030 0.970 32 H 0.150 0.850 33 H 0.080 0.920 34 H 0.063 0.937 35 H 0.109 0.891 36 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.807 -13.451 1.749 14.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 N -0.185 5.185 3 C -0.468 4.468 4 H 0.084 0.916 5 C -0.204 4.204 6 N -0.536 5.536 7 Si 0.806 3.194 8 H -0.191 1.191 9 H -0.200 1.200 10 H -0.206 1.206 11 C 0.236 3.764 12 O -0.512 6.512 13 C -0.122 4.122 14 C -0.146 4.146 15 C -0.155 4.155 16 C -0.135 4.135 17 C 0.394 3.606 18 F -0.182 7.182 19 F -0.168 7.168 20 F -0.167 7.167 21 C -0.169 4.169 22 C -0.118 4.118 23 H 0.069 0.931 24 H 0.062 0.938 25 H 0.090 0.910 26 H 0.080 0.920 27 H 0.127 0.873 28 H 0.097 0.903 29 H 0.134 0.866 30 H 0.104 0.896 31 H 0.049 0.951 32 H 0.168 0.832 33 H 0.098 0.902 34 H 0.081 0.919 35 H 0.127 0.873 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -3.365 -13.281 1.865 13.827 hybrid contribution 0.868 1.536 0.347 1.798 sum -2.497 -11.744 2.213 12.209 Atomic orbital electron populations 1.21557 0.79645 0.99637 1.01043 1.43818 1.06581 1.04628 1.63509 1.19545 0.99042 0.86293 1.41889 0.91597 1.25955 0.97084 1.02438 0.94913 1.70049 1.17324 1.30004 1.36175 0.85113 0.78117 0.77843 0.78372 1.19074 1.20010 1.20552 1.21131 0.87929 0.86266 0.81050 1.90418 1.16255 1.87776 1.56773 1.21335 0.97930 0.91822 1.01109 1.21735 0.96940 1.05241 0.90717 1.21540 0.97328 0.95916 1.00740 1.22534 0.96362 1.04447 0.90147 1.21041 0.79970 0.72743 0.86859 1.93173 1.81034 1.47109 1.96876 1.93145 1.73098 1.95964 1.54581 1.93141 1.69603 1.57065 1.96860 1.21794 0.98286 1.03734 0.93131 1.21201 0.96415 0.97433 0.96742 0.93102 0.93849 0.90991 0.91988 0.87304 0.90296 0.86600 0.89560 0.95142 0.83200 0.90186 0.91867 0.87313 0.92351 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.24 7.05 127.77 0.90 6.14 16 2 N -0.47 -23.47 3.02 -658.89 -1.99 -25.46 16 3 C -0.34 -19.42 9.29 84.04 0.78 -18.64 16 4 H 0.07 4.08 7.41 -2.91 -0.02 4.06 16 5 C 0.00 -0.14 5.14 84.93 0.44 0.30 16 6 N -0.90 -47.48 10.56 21.66 0.23 -47.26 16 7 Si 0.98 43.51 29.57 68.60 2.03 45.54 16 8 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 9 H -0.28 -11.72 7.11 99.48 0.71 -11.01 16 10 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 11 C 0.45 20.65 5.51 87.66 0.48 21.14 16 12 O -0.62 -33.97 13.35 -3.07 -0.04 -34.01 16 13 C -0.10 -3.15 2.20 -11.54 -0.03 -3.17 16 14 C -0.11 -2.89 5.07 30.60 0.16 -2.73 16 15 C -0.12 -3.61 4.74 30.59 0.15 -3.46 16 16 C -0.12 -3.08 2.16 -10.79 -0.02 -3.10 16 17 C 0.45 13.47 2.69 71.98 0.19 13.66 16 18 F -0.20 -7.62 16.28 44.97 0.73 -6.89 16 19 F -0.19 -5.35 16.80 44.97 0.76 -4.59 16 20 F -0.19 -5.24 16.80 44.97 0.76 -4.49 16 21 C -0.13 -4.04 4.67 30.59 0.14 -3.90 16 22 C -0.08 -2.16 5.09 30.59 0.16 -2.01 16 23 H 0.05 2.24 6.51 -2.39 -0.02 2.22 16 24 H 0.04 1.98 7.12 -2.39 -0.02 1.97 16 25 H 0.07 2.34 5.75 -2.38 -0.01 2.32 16 26 H 0.27 13.53 8.31 -92.71 -0.77 12.76 16 27 H 0.11 2.89 7.40 -2.39 -0.02 2.87 16 28 H 0.08 2.29 4.60 -2.39 -0.01 2.28 16 29 H 0.12 1.97 8.14 -2.39 -0.02 1.95 16 30 H 0.09 2.33 7.80 -2.39 -0.02 2.31 16 31 H 0.03 1.27 6.88 -2.39 -0.02 1.25 16 32 H 0.15 2.68 8.14 -2.39 -0.02 2.66 16 33 H 0.08 2.13 7.80 -2.39 -0.02 2.11 16 34 H 0.06 2.65 5.17 -2.38 -0.01 2.64 16 35 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.06 1.73 8.10 -2.39 -0.02 1.71 16 Total: -1.00 -68.44 288.58 6.92 -61.51 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: 1.11 Total: 11.43 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: 3.34 Total: 4.22 kcal Atomic # 7 Polarization: -70.96 SS G_CDS: -1.76 Total: -72.72 kcal Atomic # 8 Polarization: -33.97 SS G_CDS: -0.04 Total: -34.01 kcal Atomic # 9 Polarization: -18.22 SS G_CDS: 2.24 Total: -15.98 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -68.44 6.92 -61.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000216295326.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -152.315 kcal (2) G-P(sol) polarization free energy of solvation -68.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -220.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -213.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds