Wall clock time and date at job start Tue Mar 31 2020 01:45:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46498 * 119.99970 * 2 1 4 4 C 1.39918 * 119.99977 * 179.97438 * 2 1 3 5 5 C 1.38882 * 119.99969 * 179.72126 * 4 2 1 6 6 C 1.38077 * 119.99015 * 179.76545 * 5 4 2 7 7 C 1.38850 * 120.00610 * 0.49643 * 6 5 4 8 8 N 1.40139 * 119.99552 * 179.74520 * 7 6 5 9 9 C 1.34780 * 119.99731 * 221.90955 * 8 7 6 10 10 S 1.71202 * 119.99923 * 5.53758 * 9 8 7 11 11 N 1.34772 * 120.00155 * 185.53591 * 9 8 7 12 12 C 1.46504 * 120.00022 * 179.97438 * 11 9 8 13 13 C 1.50706 * 109.46798 * 179.97438 * 12 11 9 14 14 H 1.07997 * 120.00378 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99891 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00326 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 119.99933 * 0.02562 * 15 13 12 18 18 H 1.48507 * 109.46988 * 90.00053 * 17 15 13 19 19 H 1.48498 * 109.47223 * 209.99956 * 17 15 13 20 20 H 1.48505 * 109.47080 * 330.00529 * 17 15 13 21 21 C 1.38848 * 120.00498 * 359.76100 * 7 6 5 22 22 C 1.38068 * 120.00426 * 0.02562 * 21 7 6 23 23 H 1.08993 * 109.47216 * 270.00637 * 1 2 3 24 24 H 1.09006 * 109.47037 * 30.00602 * 1 2 3 25 25 H 1.08999 * 109.46720 * 150.00300 * 1 2 3 26 26 H 1.09006 * 109.47067 * 269.99592 * 3 2 1 27 27 H 1.08999 * 109.47315 * 29.99238 * 3 2 1 28 28 H 1.09000 * 109.47750 * 150.00023 * 3 2 1 29 29 H 1.07997 * 120.00844 * 0.02562 * 5 4 2 30 30 H 1.07997 * 119.99540 * 180.23829 * 6 5 4 31 31 H 0.96995 * 120.00459 * 41.91230 * 8 7 6 32 32 H 0.97003 * 120.00093 * 0.02562 * 11 9 8 33 33 H 1.08993 * 109.47390 * 300.00024 * 12 11 9 34 34 H 1.08995 * 109.47050 * 60.00446 * 12 11 9 35 35 H 0.96995 * 120.00144 * 180.02562 * 16 15 13 36 36 H 1.08003 * 119.99945 * 179.97438 * 21 7 6 37 37 H 1.08006 * 120.00238 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1646 -1.2117 0.0005 5 6 3.5534 -1.2117 -0.0053 6 6 4.2436 -2.4076 0.0001 7 6 3.5493 -3.6101 0.0010 8 7 4.2500 -4.8237 0.0011 9 6 3.8343 -5.8419 -0.7779 10 16 2.5381 -5.6088 -1.8717 11 7 4.4389 -7.0436 -0.6958 12 6 3.9866 -8.1505 -1.5422 13 6 4.8213 -9.3729 -1.2590 14 1 5.6095 -9.3298 -0.5220 15 6 4.5787 -10.5465 -1.9408 16 7 5.3067 -11.6134 -1.6934 17 14 3.2158 -10.6211 -3.2161 18 1 3.7622 -10.2518 -4.5467 19 1 2.6652 -11.9991 -3.2723 20 1 2.1365 -9.6715 -2.8434 21 6 2.1608 -3.6101 0.0015 22 6 1.4703 -2.4145 0.0005 23 1 -0.3633 0.0001 1.0276 24 1 -0.3633 0.8900 -0.5140 25 1 -0.3633 -0.8900 -0.5138 26 1 2.3792 1.5833 -1.0277 27 1 1.6084 2.0284 0.5137 28 1 3.1499 1.1385 0.5138 29 1 4.0935 -0.2765 -0.0099 30 1 5.3236 -2.4077 -0.0005 31 1 5.0342 -4.9309 0.5618 32 1 5.1731 -7.1758 -0.0758 33 1 2.9400 -8.3673 -1.3284 34 1 4.0934 -7.8732 -2.5909 35 1 5.1362 -12.4389 -2.1733 36 1 1.6209 -4.5455 0.0017 37 1 0.3903 -2.4146 0.0004 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000242501869.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:45:44 Heat of formation + Delta-G solvation = 62.166264 kcal Electronic energy + Delta-G solvation = -18579.711577 eV Core-core repulsion = 15676.690016 eV Total energy + Delta-G solvation = -2903.021561 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.99248 -38.38862 -36.42676 -34.33866 -32.57234 -31.15216 -29.39054 -28.32233 -27.78558 -24.73232 -23.64055 -22.38069 -22.00820 -20.76032 -18.43941 -18.06388 -16.88417 -16.56774 -15.77125 -15.33713 -15.19859 -14.74940 -14.60244 -14.27719 -13.69854 -13.59386 -13.46969 -12.87468 -12.73232 -12.52708 -12.40325 -12.16381 -12.12699 -11.88073 -11.05714 -10.92017 -10.71171 -10.67398 -10.04579 -9.92273 -9.67726 -8.93015 -8.85128 -8.61075 -7.36716 -7.12157 -6.57764 -6.30712 -4.36516 1.37771 1.61254 2.10410 2.47717 2.99687 3.12512 3.27494 3.34576 3.45947 3.99152 4.09899 4.29208 4.79997 4.80936 5.01019 5.05211 5.08742 5.15093 5.37680 5.44066 5.45196 5.56601 5.60594 5.65313 6.01673 6.15905 6.25793 6.38819 6.63067 6.64686 6.91087 6.91970 7.06022 7.18323 7.24188 7.33563 7.53558 7.87213 8.19729 8.62758 9.26271 10.80328 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.041997 B = 0.003429 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.553257 B = 8164.384632 C = 8630.309007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.642 5.642 3 C 0.096 3.904 4 C 0.210 3.790 5 C -0.195 4.195 6 C -0.081 4.081 7 C 0.085 3.915 8 N -0.643 5.643 9 C 0.552 3.448 10 S -0.658 6.658 11 N -0.641 5.641 12 C 0.222 3.778 13 C -0.557 4.557 14 H 0.079 0.921 15 C 0.084 3.916 16 N -0.888 5.888 17 Si 0.873 3.127 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.252 1.252 21 C -0.021 4.021 22 C -0.188 4.188 23 H 0.045 0.955 24 H 0.062 0.938 25 H 0.071 0.929 26 H 0.045 0.955 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.122 0.878 30 H 0.120 0.880 31 H 0.401 0.599 32 H 0.396 0.604 33 H 0.050 0.950 34 H 0.044 0.956 35 H 0.270 0.730 36 H 0.143 0.857 37 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.513 23.318 6.909 24.735 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.355 5.355 3 C -0.048 4.048 4 C 0.109 3.891 5 C -0.219 4.219 6 C -0.103 4.103 7 C -0.010 4.010 8 N -0.270 5.270 9 C 0.190 3.810 10 S -0.529 6.529 11 N -0.263 5.263 12 C 0.101 3.899 13 C -0.595 4.595 14 H 0.097 0.903 15 C -0.121 4.121 16 N -0.524 5.524 17 Si 0.699 3.301 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.175 1.175 21 C -0.044 4.044 22 C -0.212 4.212 23 H 0.064 0.936 24 H 0.081 0.919 25 H 0.089 0.911 26 H 0.064 0.936 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.140 0.860 30 H 0.138 0.862 31 H 0.238 0.762 32 H 0.233 0.767 33 H 0.068 0.932 34 H 0.062 0.938 35 H 0.080 0.920 36 H 0.161 0.839 37 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.491 23.219 6.000 24.602 hybrid contribution 0.903 -0.434 0.309 1.048 sum -4.588 22.785 6.309 24.083 Atomic orbital electron populations 1.21604 0.79695 1.02659 1.00927 1.46303 1.04838 1.03059 1.81289 1.21577 0.97174 0.85053 1.00953 1.17855 0.91121 0.85532 0.94589 1.20273 0.91901 0.97590 1.12118 1.20568 0.99115 0.90635 0.99953 1.17151 0.91268 0.83142 1.09451 1.42119 1.30783 1.11160 1.42970 1.22323 0.90300 0.82170 0.86196 1.93155 1.26996 1.90409 1.42331 1.45648 1.32917 1.08372 1.39325 1.20027 0.97174 0.82232 0.90507 1.20994 1.19169 0.93703 1.25602 0.90348 1.24718 0.96058 0.94900 0.96442 1.69862 1.39269 1.01754 1.41562 0.86841 0.83024 0.78153 0.82099 1.19583 1.20829 1.17543 1.21167 0.92512 0.98932 0.91810 1.20467 0.99565 0.90253 1.10912 0.93615 0.91890 0.91052 0.93637 0.91901 0.91396 0.86035 0.86200 0.76188 0.76737 0.93237 0.93775 0.92008 0.83895 0.85853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.73 10.19 59.85 0.61 1.34 16 2 N -0.64 -6.26 3.42 -187.49 -0.64 -6.90 16 3 C 0.10 0.67 10.18 59.85 0.61 1.28 16 4 C 0.21 2.54 6.56 -83.69 -0.55 1.99 16 5 C -0.20 -2.24 9.20 -39.40 -0.36 -2.60 16 6 C -0.08 -0.99 9.96 -39.41 -0.39 -1.38 16 7 C 0.08 1.22 5.91 -83.61 -0.49 0.72 16 8 N -0.64 -9.17 5.34 -11.36 -0.06 -9.23 16 9 C 0.55 10.18 7.75 -86.92 -0.67 9.51 16 10 S -0.66 -14.62 25.06 -107.50 -2.69 -17.32 16 11 N -0.64 -12.20 5.55 -63.21 -0.35 -12.55 16 12 C 0.22 5.21 3.95 -5.19 -0.02 5.19 16 13 C -0.56 -14.73 9.83 -34.44 -0.34 -15.07 16 14 H 0.08 2.15 7.84 -52.49 -0.41 1.74 16 15 C 0.08 2.32 5.47 -17.82 -0.10 2.22 16 16 N -0.89 -25.86 13.96 55.43 0.77 -25.09 16 17 Si 0.87 21.11 27.47 -169.99 -4.67 16.44 16 18 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.25 -6.07 6.54 56.52 0.37 -5.70 16 21 C -0.02 -0.32 7.85 -39.42 -0.31 -0.63 16 22 C -0.19 -2.50 9.20 -39.41 -0.36 -2.86 16 23 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 24 H 0.06 0.38 8.07 -51.93 -0.42 -0.04 16 25 H 0.07 0.58 6.20 -51.93 -0.32 0.26 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.06 0.33 8.07 -51.93 -0.42 -0.09 16 28 H 0.07 0.44 6.21 -51.93 -0.32 0.12 16 29 H 0.12 1.12 6.14 -52.49 -0.32 0.80 16 30 H 0.12 1.20 8.06 -52.49 -0.42 0.77 16 31 H 0.40 4.32 8.84 -40.82 -0.36 3.96 16 32 H 0.40 6.46 8.34 -40.82 -0.34 6.12 16 33 H 0.05 1.24 7.05 -51.93 -0.37 0.87 16 34 H 0.04 1.10 7.42 -51.93 -0.39 0.72 16 35 H 0.27 7.36 8.31 -40.82 -0.34 7.03 16 36 H 0.14 2.46 6.27 -49.90 -0.31 2.15 16 37 H 0.12 1.45 6.14 -52.48 -0.32 1.13 16 LS Contribution 316.84 15.07 4.77 4.77 Total: -1.00 -32.98 316.84 -9.99 -42.96 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -4.74 Total: 7.20 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -2.38 Total: -0.29 kcal Atomic # 7 Polarization: -53.49 SS G_CDS: -0.28 Total: -53.77 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -4.67 Total: 16.44 kcal Atomic # 16 Polarization: -14.62 SS G_CDS: -2.69 Total: -17.32 kcal Total LS contribution 4.77 Total: 4.77 kcal Total: -32.98 -9.99 -42.96 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000242501869.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.129 kcal (2) G-P(sol) polarization free energy of solvation -32.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.963 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.166 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds