Wall clock time and date at job start Tue Mar 31 2020 01:45:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46498 * 119.99970 * 2 1 4 4 C 1.39918 * 119.99977 * 179.97438 * 2 1 3 5 5 C 1.38882 * 119.99969 * 179.72126 * 4 2 1 6 6 C 1.38077 * 119.99015 * 179.76545 * 5 4 2 7 7 C 1.38850 * 120.00610 * 0.49643 * 6 5 4 8 8 N 1.40139 * 119.99552 * 179.74520 * 7 6 5 9 9 C 1.34780 * 119.99731 * 221.90955 * 8 7 6 10 10 S 1.71202 * 119.99923 * 5.53758 * 9 8 7 11 11 N 1.34772 * 120.00155 * 185.53591 * 9 8 7 12 12 C 1.46504 * 120.00022 * 179.97438 * 11 9 8 13 13 C 1.50706 * 109.46798 * 179.97438 * 12 11 9 14 14 H 1.07997 * 120.00378 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99891 * 180.02562 * 13 12 11 16 16 N 1.31511 * 120.00326 * 180.02562 * 15 13 12 17 17 Si 1.86803 * 119.99933 * 0.02562 * 15 13 12 18 18 H 1.48507 * 109.46988 * 90.00053 * 17 15 13 19 19 H 1.48498 * 109.47223 * 209.99956 * 17 15 13 20 20 H 1.48505 * 109.47080 * 330.00529 * 17 15 13 21 21 C 1.38848 * 120.00498 * 359.76100 * 7 6 5 22 22 C 1.38068 * 120.00426 * 0.02562 * 21 7 6 23 23 H 1.08993 * 109.47216 * 270.00637 * 1 2 3 24 24 H 1.09006 * 109.47037 * 30.00602 * 1 2 3 25 25 H 1.08999 * 109.46720 * 150.00300 * 1 2 3 26 26 H 1.09006 * 109.47067 * 269.99592 * 3 2 1 27 27 H 1.08999 * 109.47315 * 29.99238 * 3 2 1 28 28 H 1.09000 * 109.47750 * 150.00023 * 3 2 1 29 29 H 1.07997 * 120.00844 * 0.02562 * 5 4 2 30 30 H 1.07997 * 119.99540 * 180.23829 * 6 5 4 31 31 H 0.96995 * 120.00459 * 41.91230 * 8 7 6 32 32 H 0.97003 * 120.00093 * 0.02562 * 11 9 8 33 33 H 1.08993 * 109.47390 * 300.00024 * 12 11 9 34 34 H 1.08995 * 109.47050 * 60.00446 * 12 11 9 35 35 H 0.96995 * 120.00144 * 180.02562 * 16 15 13 36 36 H 1.08003 * 119.99945 * 179.97438 * 21 7 6 37 37 H 1.08006 * 120.00238 * 179.97438 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1646 -1.2117 0.0005 5 6 3.5534 -1.2117 -0.0053 6 6 4.2436 -2.4076 0.0001 7 6 3.5493 -3.6101 0.0010 8 7 4.2500 -4.8237 0.0011 9 6 3.8343 -5.8419 -0.7779 10 16 2.5381 -5.6088 -1.8717 11 7 4.4389 -7.0436 -0.6958 12 6 3.9866 -8.1505 -1.5422 13 6 4.8213 -9.3729 -1.2590 14 1 5.6095 -9.3298 -0.5220 15 6 4.5787 -10.5465 -1.9408 16 7 5.3067 -11.6134 -1.6934 17 14 3.2158 -10.6211 -3.2161 18 1 3.7622 -10.2518 -4.5467 19 1 2.6652 -11.9991 -3.2723 20 1 2.1365 -9.6715 -2.8434 21 6 2.1608 -3.6101 0.0015 22 6 1.4703 -2.4145 0.0005 23 1 -0.3633 0.0001 1.0276 24 1 -0.3633 0.8900 -0.5140 25 1 -0.3633 -0.8900 -0.5138 26 1 2.3792 1.5833 -1.0277 27 1 1.6084 2.0284 0.5137 28 1 3.1499 1.1385 0.5138 29 1 4.0935 -0.2765 -0.0099 30 1 5.3236 -2.4077 -0.0005 31 1 5.0342 -4.9309 0.5618 32 1 5.1731 -7.1758 -0.0758 33 1 2.9400 -8.3673 -1.3284 34 1 4.0934 -7.8732 -2.5909 35 1 5.1362 -12.4389 -2.1733 36 1 1.6209 -4.5455 0.0017 37 1 0.3903 -2.4146 0.0004 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000242501869.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:45:43 Heat of formation + Delta-G solvation = 40.973223 kcal Electronic energy + Delta-G solvation = -18580.630576 eV Core-core repulsion = 15676.690016 eV Total energy + Delta-G solvation = -2903.940560 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.110 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.08853 -39.61872 -37.60536 -35.67530 -34.49226 -32.10407 -30.80361 -29.26869 -28.97123 -25.85412 -24.86134 -24.17553 -23.13328 -21.77293 -20.02101 -19.24542 -18.43114 -17.86966 -16.85752 -16.72090 -16.53259 -15.91576 -15.85632 -15.45786 -15.36115 -14.75283 -14.50948 -14.44358 -13.89787 -13.51556 -13.29348 -13.25476 -13.00870 -12.83824 -12.81985 -12.64768 -12.30696 -11.93385 -11.77033 -11.73063 -11.15475 -10.86184 -9.98530 -9.88495 -8.99651 -8.45412 -8.41144 -7.90350 -6.52708 0.09825 0.60979 0.79666 1.00977 1.34806 1.37829 1.53298 1.65903 2.27688 2.31117 2.69539 2.92695 2.99283 3.96159 4.09912 4.27844 4.41827 4.47497 4.53641 4.58798 4.64946 4.69281 4.85489 4.92557 4.95516 4.96421 4.97572 5.14824 5.22212 5.30112 5.35898 5.49678 5.69281 5.89134 6.07315 6.13762 6.41882 6.44159 6.56425 6.61310 7.13666 8.70059 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.041997 B = 0.003429 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 666.553257 B = 8164.384632 C = 8630.309007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.088 3.912 2 N -0.644 5.644 3 C 0.089 3.911 4 C 0.212 3.788 5 C -0.196 4.196 6 C -0.069 4.069 7 C 0.051 3.949 8 N -0.611 5.611 9 C 0.572 3.428 10 S -0.732 6.732 11 N -0.640 5.640 12 C 0.242 3.758 13 C -0.554 4.554 14 H 0.062 0.938 15 C 0.036 3.964 16 N -0.927 5.927 17 Si 0.930 3.070 18 H -0.266 1.266 19 H -0.274 1.274 20 H -0.254 1.254 21 C -0.036 4.036 22 C -0.202 4.202 23 H 0.055 0.945 24 H 0.083 0.917 25 H 0.061 0.939 26 H 0.050 0.950 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.150 0.850 30 H 0.147 0.853 31 H 0.422 0.578 32 H 0.412 0.588 33 H 0.035 0.965 34 H 0.032 0.968 35 H 0.274 0.726 36 H 0.115 0.885 37 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.158 26.154 7.394 27.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.355 5.355 3 C -0.054 4.054 4 C 0.109 3.891 5 C -0.219 4.219 6 C -0.091 4.091 7 C -0.043 4.043 8 N -0.238 5.238 9 C 0.207 3.793 10 S -0.604 6.604 11 N -0.264 5.264 12 C 0.119 3.881 13 C -0.592 4.592 14 H 0.081 0.919 15 C -0.165 4.165 16 N -0.565 5.565 17 Si 0.754 3.246 18 H -0.191 1.191 19 H -0.199 1.199 20 H -0.178 1.178 21 C -0.059 4.059 22 C -0.226 4.226 23 H 0.073 0.927 24 H 0.102 0.898 25 H 0.080 0.920 26 H 0.068 0.932 27 H 0.102 0.898 28 H 0.094 0.906 29 H 0.168 0.832 30 H 0.165 0.835 31 H 0.263 0.737 32 H 0.251 0.749 33 H 0.053 0.947 34 H 0.050 0.950 35 H 0.083 0.917 36 H 0.133 0.867 37 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -5.120 26.152 6.543 27.440 hybrid contribution 0.798 -1.069 0.292 1.366 sum -4.322 25.082 6.835 26.354 Atomic orbital electron populations 1.21751 0.78777 1.03228 1.01709 1.46621 1.05755 1.03162 1.80000 1.21796 0.97734 0.84141 1.01689 1.18033 0.91752 0.86048 0.93278 1.20630 0.91769 0.98506 1.11023 1.20843 1.00455 0.89717 0.98038 1.17350 0.91171 0.83548 1.12256 1.41984 1.30612 1.10140 1.41081 1.21808 0.89016 0.82667 0.85761 1.93294 1.30392 1.91279 1.45478 1.45166 1.33797 1.07787 1.39688 1.19493 0.95798 0.82374 0.90450 1.21206 1.18679 0.94728 1.24621 0.91941 1.25446 0.98016 0.94780 0.98296 1.69951 1.41022 1.02486 1.43054 0.85952 0.80452 0.78292 0.79949 1.19120 1.19947 1.17830 1.21007 0.93141 0.98549 0.93194 1.20543 1.00034 0.90398 1.11586 0.92688 0.89816 0.92045 0.93180 0.89845 0.90577 0.83221 0.83513 0.73714 0.74934 0.94673 0.95012 0.91666 0.86713 0.85341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.17 10.19 127.77 1.30 2.48 16 2 N -0.64 -10.81 3.42 -747.09 -2.55 -13.37 16 3 C 0.09 0.93 10.18 127.77 1.30 2.23 16 4 C 0.21 4.69 6.56 38.16 0.25 4.94 16 5 C -0.20 -3.88 9.20 22.39 0.21 -3.68 16 6 C -0.07 -1.49 9.96 22.38 0.22 -1.27 16 7 C 0.05 1.40 5.91 38.11 0.23 1.63 16 8 N -0.61 -16.59 5.34 -189.84 -1.01 -17.60 16 9 C 0.57 20.90 7.75 179.05 1.39 22.28 16 10 S -0.73 -33.20 25.06 -56.49 -1.42 -34.62 16 11 N -0.64 -24.09 5.55 -353.90 -1.97 -26.06 16 12 C 0.24 11.41 3.95 85.63 0.34 11.75 16 13 C -0.55 -29.52 9.83 25.60 0.25 -29.27 16 14 H 0.06 3.46 7.84 -2.91 -0.02 3.44 16 15 C 0.04 2.00 5.47 84.66 0.46 2.46 16 16 N -0.93 -54.42 13.96 21.45 0.30 -54.12 16 17 Si 0.93 43.88 27.47 68.60 1.88 45.76 16 18 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 19 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 20 H -0.25 -12.04 6.54 99.48 0.65 -11.39 16 21 C -0.04 -1.11 7.85 22.38 0.18 -0.93 16 22 C -0.20 -5.28 9.20 22.38 0.21 -5.08 16 23 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 24 H 0.08 0.77 8.07 -2.38 -0.02 0.76 16 25 H 0.06 0.95 6.20 -2.39 -0.01 0.93 16 26 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 27 H 0.08 0.56 8.07 -2.39 -0.02 0.54 16 28 H 0.08 0.68 6.21 -2.39 -0.01 0.66 16 29 H 0.15 2.10 6.14 -2.91 -0.02 2.08 16 30 H 0.15 2.32 8.06 -2.91 -0.02 2.30 16 31 H 0.42 8.06 8.84 -92.71 -0.82 7.24 16 32 H 0.41 13.01 8.34 -92.71 -0.77 12.23 16 33 H 0.04 1.78 7.05 -2.39 -0.02 1.76 16 34 H 0.03 1.59 7.42 -2.39 -0.02 1.58 16 35 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 36 H 0.11 4.15 6.27 -4.55 -0.03 4.12 16 37 H 0.13 3.07 6.14 -2.91 -0.02 3.06 16 Total: -1.00 -72.15 316.84 1.02 -71.14 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: -0.55 Total: 21.32 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: 6.33 Total: 7.54 kcal Atomic # 7 Polarization: -105.92 SS G_CDS: -5.23 Total: -111.15 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 1.88 Total: 45.76 kcal Atomic # 16 Polarization: -33.20 SS G_CDS: -1.42 Total: -34.62 kcal Total: -72.15 1.02 -71.14 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000242501869.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.112 kcal (2) G-P(sol) polarization free energy of solvation -72.154 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.138 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds