Wall clock time and date at job start Tue Mar 31 2020 00:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47251 * 2 1 4 4 N 1.46504 * 109.46991 * 180.02562 * 3 2 1 5 5 C 1.36937 * 119.99809 * 272.72723 * 4 3 2 6 6 H 1.07994 * 120.00093 * 146.19802 * 5 4 3 7 7 C 1.38816 * 119.99945 * 326.19337 * 5 4 3 8 8 N 1.31612 * 120.00313 * 337.94313 * 7 5 4 9 9 Si 1.86799 * 119.99602 * 157.93945 * 7 5 4 10 10 H 1.48498 * 109.47432 * 0.02562 * 9 7 5 11 11 H 1.48505 * 109.47036 * 120.00435 * 9 7 5 12 12 H 1.48498 * 109.47201 * 239.99941 * 9 7 5 13 13 C 1.46501 * 120.00063 * 92.73057 * 4 3 2 14 14 C 1.50696 * 109.46805 * 269.99564 * 13 4 3 15 15 C 1.32574 * 120.00029 * 128.05298 * 14 13 4 16 16 C 1.47805 * 119.99790 * 9.23637 * 15 14 13 17 17 C 1.39544 * 120.12700 * 34.39640 * 16 15 14 18 18 C 1.37951 * 119.87276 * 180.02562 * 17 16 15 19 19 C 1.38468 * 120.12456 * 0.25824 * 18 17 16 20 20 Cl 1.73603 * 119.87020 * 179.72578 * 19 18 17 21 21 C 1.38465 * 120.26126 * 359.48363 * 19 18 17 22 22 C 1.37949 * 120.12292 * 0.51461 * 21 19 18 23 23 H 1.09006 * 109.47342 * 179.97438 * 1 2 3 24 24 H 1.09003 * 109.47200 * 299.99693 * 1 2 3 25 25 H 1.08997 * 109.47217 * 59.99870 * 1 2 3 26 26 H 1.09002 * 109.47331 * 239.99533 * 2 1 3 27 27 H 1.09005 * 109.46966 * 119.99958 * 2 1 3 28 28 H 1.08995 * 109.47046 * 59.99823 * 3 2 1 29 29 H 1.08993 * 109.46791 * 299.99837 * 3 2 1 30 30 H 0.97004 * 120.00644 * 179.97438 * 8 7 5 31 31 H 1.08994 * 109.46887 * 149.99544 * 13 4 3 32 32 H 1.09000 * 109.46810 * 29.99674 * 13 4 3 33 33 H 1.08002 * 120.00552 * 308.05131 * 14 13 4 34 34 H 1.07996 * 120.00648 * 189.23494 * 15 14 13 35 35 H 1.07999 * 120.07059 * 0.04530 * 17 16 15 36 36 H 1.07996 * 119.93838 * 179.97438 * 18 17 16 37 37 H 1.07990 * 119.94025 * 180.23631 * 21 19 18 38 38 H 1.08008 * 120.06265 * 179.76229 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1902 1.3858 1.1837 6 1 5.1332 0.8623 1.2374 7 6 3.6726 2.0014 2.3151 8 7 2.7957 2.9751 2.1916 9 14 4.2206 1.4477 4.0129 10 1 5.2061 0.3450 3.8798 11 1 4.8483 2.5885 4.7269 12 1 3.0434 0.9701 4.7817 13 6 4.2370 1.5030 -1.2682 14 6 4.4879 0.1046 -1.7706 15 6 4.1486 -0.2257 -3.0089 16 6 3.7156 0.8193 -3.9602 17 6 4.2826 2.0933 -3.9070 18 6 3.8743 3.0648 -4.7971 19 6 2.8999 2.7794 -5.7386 20 17 2.3858 4.0092 -6.8510 21 6 2.3375 1.5156 -5.7997 22 6 2.7380 0.5361 -4.9147 23 1 -0.3634 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 1.8933 -0.5139 -0.8899 27 1 1.8933 -0.5139 0.8900 28 1 1.6766 1.9563 0.8899 29 1 1.6767 1.9563 -0.8900 30 1 2.4337 3.4051 2.9822 31 1 5.1894 2.0101 -1.1138 32 1 3.6476 2.0526 -2.0022 33 1 4.9443 -0.6285 -1.1220 34 1 4.1884 -1.2584 -3.3225 35 1 5.0399 2.3182 -3.1706 36 1 4.3121 4.0512 -4.7566 37 1 1.5807 1.2976 -6.5385 38 1 2.2959 -0.4482 -4.9608 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000254988600.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:59:02 Heat of formation + Delta-G solvation = 48.566212 kcal Electronic energy + Delta-G solvation = -19343.618723 eV Core-core repulsion = 16405.670962 eV Total energy + Delta-G solvation = -2937.947761 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 279.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.36870 -36.78927 -36.17980 -34.05421 -32.34446 -31.21342 -30.79628 -28.97359 -25.97592 -25.50511 -22.89269 -22.51938 -21.45029 -20.02002 -18.91398 -16.93723 -16.41988 -15.67775 -15.22273 -14.89413 -14.35638 -14.08885 -13.60305 -13.49208 -13.33826 -13.06035 -12.98824 -12.48883 -12.11212 -11.75982 -11.41499 -11.39213 -11.26726 -11.09830 -10.85492 -10.78421 -10.69626 -10.49131 -10.25685 -9.98383 -9.91183 -9.50769 -9.21392 -8.85412 -8.52455 -7.83504 -6.63842 -5.77741 -3.36101 1.06012 1.41384 2.19008 2.72393 3.33896 3.42934 3.44914 3.86857 4.47605 4.88061 4.94897 5.04855 5.27356 5.38678 5.45237 5.54283 5.66818 5.79911 5.90203 5.96974 6.01428 6.05543 6.27242 6.29608 6.35882 6.39017 6.57470 6.61459 6.65185 6.72144 6.87269 6.93116 6.99382 7.05610 7.23737 7.32221 7.75697 7.86348 8.48800 9.17216 9.80538 10.35672 11.19799 Molecular weight = 279.11amu Principal moments of inertia in cm(-1) A = 0.021589 B = 0.004290 C = 0.004202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1296.653152 B = 6525.987274 C = 6661.421773 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.138 4.138 3 C 0.141 3.859 4 N -0.579 5.579 5 C -0.260 4.260 6 H 0.062 0.938 7 C 0.010 3.990 8 N -0.886 5.886 9 Si 0.896 3.104 10 H -0.276 1.276 11 H -0.290 1.290 12 H -0.288 1.288 13 C 0.149 3.851 14 C -0.103 4.103 15 C -0.178 4.178 16 C -0.024 4.024 17 C -0.099 4.099 18 C -0.110 4.110 19 C -0.044 4.044 20 Cl -0.084 7.084 21 C -0.113 4.113 22 C -0.107 4.107 23 H 0.038 0.962 24 H 0.050 0.950 25 H 0.043 0.957 26 H 0.041 0.959 27 H 0.054 0.946 28 H 0.102 0.898 29 H 0.019 0.981 30 H 0.254 0.746 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.110 0.890 34 H 0.111 0.889 35 H 0.140 0.860 36 H 0.131 0.869 37 H 0.128 0.872 38 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.526 -3.130 -14.067 14.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.178 4.178 3 C 0.015 3.985 4 N -0.297 5.297 5 C -0.389 4.389 6 H 0.080 0.920 7 C -0.189 4.189 8 N -0.529 5.529 9 Si 0.725 3.275 10 H -0.201 1.201 11 H -0.217 1.217 12 H -0.215 1.215 13 C 0.023 3.977 14 C -0.124 4.124 15 C -0.198 4.198 16 C -0.025 4.025 17 C -0.117 4.117 18 C -0.129 4.129 19 C -0.070 4.070 20 Cl -0.056 7.056 21 C -0.132 4.132 22 C -0.125 4.125 23 H 0.057 0.943 24 H 0.069 0.931 25 H 0.063 0.937 26 H 0.059 0.941 27 H 0.073 0.927 28 H 0.120 0.880 29 H 0.037 0.963 30 H 0.064 0.936 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.128 0.872 34 H 0.129 0.871 35 H 0.158 0.842 36 H 0.149 0.851 37 H 0.146 0.854 38 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.647 -2.868 -14.012 14.317 hybrid contribution 0.053 -0.371 0.862 0.940 sum -0.594 -3.239 -13.150 13.556 Atomic orbital electron populations 1.21694 0.97717 0.99819 1.01006 1.22069 0.93517 1.01696 1.00506 1.21117 0.83079 0.92576 1.01752 1.43850 1.01061 1.84577 1.00255 1.19098 1.05575 1.27671 0.86599 0.92048 1.25061 0.99683 0.95475 0.98727 1.69951 1.32922 1.21716 1.28320 0.86341 0.78105 0.78320 0.84710 1.20135 1.21670 1.21452 1.20600 0.96772 0.90837 0.89469 1.24591 0.91742 1.01946 0.94158 1.21376 1.07243 0.96768 0.94375 1.19194 0.94765 0.93770 0.94729 1.21556 1.00429 0.92146 0.97583 1.20982 0.96899 1.00376 0.94614 1.20909 1.00179 0.90378 0.95580 1.98346 1.90349 1.54800 1.62068 1.20887 1.00560 0.91563 1.00168 1.21188 0.97118 0.99216 0.94991 0.94273 0.93128 0.93738 0.94066 0.92684 0.88039 0.96273 0.93574 0.92430 0.92274 0.87227 0.87110 0.84209 0.85098 0.85422 0.85364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.91 37.15 0.37 -2.15 16 2 C -0.14 -2.83 6.25 -26.73 -0.17 -2.99 16 3 C 0.14 3.30 5.35 -4.04 -0.02 3.28 16 4 N -0.58 -13.92 2.44 -174.62 -0.43 -14.35 16 5 C -0.26 -6.87 9.49 -15.06 -0.14 -7.01 16 6 H 0.06 1.61 7.92 -52.49 -0.42 1.19 16 7 C 0.01 0.28 5.00 -17.43 -0.09 0.19 16 8 N -0.89 -25.07 11.21 55.49 0.62 -24.44 16 9 Si 0.90 21.18 29.61 -169.99 -5.03 16.15 16 10 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 12 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 13 C 0.15 2.98 4.37 -5.20 -0.02 2.96 16 14 C -0.10 -1.77 9.38 -36.22 -0.34 -2.11 16 15 C -0.18 -2.66 9.81 -37.58 -0.37 -3.03 16 16 C -0.02 -0.35 5.24 -105.01 -0.55 -0.90 16 17 C -0.10 -1.43 7.31 -39.20 -0.29 -1.71 16 18 C -0.11 -1.48 9.81 -39.60 -0.39 -1.87 16 19 C -0.04 -0.58 6.32 -39.41 -0.25 -0.83 16 20 Cl -0.08 -1.01 28.95 -51.86 -1.50 -2.52 16 21 C -0.11 -1.41 9.81 -39.60 -0.39 -1.80 16 22 C -0.11 -1.39 9.78 -39.20 -0.38 -1.77 16 23 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 24 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 25 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.04 0.81 7.74 -51.93 -0.40 0.41 16 27 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 28 H 0.10 2.71 5.25 -51.93 -0.27 2.44 16 29 H 0.02 0.44 7.86 -51.93 -0.41 0.03 16 30 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 31 H 0.06 1.16 7.77 -51.93 -0.40 0.76 16 32 H 0.06 1.16 4.52 -51.93 -0.23 0.92 16 33 H 0.11 1.91 8.06 -52.49 -0.42 1.49 16 34 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 35 H 0.14 1.99 5.98 -52.49 -0.31 1.68 16 36 H 0.13 1.56 8.06 -52.49 -0.42 1.14 16 37 H 0.13 1.32 8.06 -52.49 -0.42 0.90 16 38 H 0.13 1.42 8.06 -52.48 -0.42 0.99 16 LS Contribution 329.58 15.07 4.97 4.97 Total: -1.00 -27.81 329.58 -9.79 -37.60 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -5.39 Total: 2.34 kcal Atomic # 6 Polarization: -16.72 SS G_CDS: -3.03 Total: -19.75 kcal Atomic # 7 Polarization: -38.99 SS G_CDS: 0.20 Total: -38.79 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.03 Total: 16.15 kcal Atomic # 17 Polarization: -1.01 SS G_CDS: -1.50 Total: -2.52 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -27.81 -9.79 -37.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000254988600.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.168 kcal (2) G-P(sol) polarization free energy of solvation -27.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.601 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds